Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8506051.1

Orthogroup ID

OG0015204

Physical Location & Seq

Genomic Coordinates Reverse (-)

2111 .. 3238

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8506051.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgcccaagagagacgtttcggcttttgcgtggaattcacttatatccgggtatgctgagttgggtttgtatgaagatgctatggcgctgtactttcaaatggaggaggaaggggttgaaccggaccggtttacgttccctcgagttttgaaagcttgtgggggaattgggtttgttcagattggtgaggctgtgcataggcatgcggtgcgtttgggttttgtaggtgataggtttgtgcttaatgcactagtggacatgtatgctaaatgtggtgacattgtgaaggctaggaaggtgtttgataagattggtagccgggacaaggtttcttggaacacaatgctcactgcttatatgcgccacggccttttgttgcaggcattggacatttttcaccaaatgattagagaagggtaccagccggactccgttactatatccacaattctcaccgcagtaccatcactggagcttgttgttcaaattcatgggtggacgattcggcaaggagttgagtggaacctgtctattgctaattccttgattgctgcatattccaatcatggaaagttgaagcgcgctcgttggctgttttgtcaaatgcctgagagggacgtggtgacatggaatactataatttcagctcattctaaaagccgagaagctttggtgtactttgagcagatggagagtgccggtgccttgccggatgctatcacattcgtgtcaatgctctcggtttgtgcgcatttgggtttggtgaaggatggggagagattgttttctaccatgaaaaacagatacagaattagtccaattatggaacattatgcttgtatggtgaatctttatggaagggcaggtctaatcaaagacgcttatggtattataatggagggaatggagtttgaggctggtccaactgtgtggggtgcattgctatatgcttgctacctttatgggaatgcagagattggagaggttgcagctgaaagactcttcgacttggagcctgataatgaatataattttgagcttctgatgaagatttacggcaatgtgggtagactggacaatgtagagagagtaagaatgatgatggtggatagaggactggactcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK PPR PPR_2

Protein Analysis

375

Amino Acids

42.38

Weight (kDa)

5.78

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25270
fragaria_vesca	FvH4_7g27870
malus_domestica	MD00G1104900.v1.1
prunus_persica	Prupe.2G280000_v2.0.a1
pyrus_communis	pycom01g19550
rosa_chinensis	RchiOBHm_Chr1g0374811
rosa_laevigata	RLG00000026713
rosa_multiflora	Rmu_co8506051.1_g000002 Rmu_sc0004947.1_g000023
rosa_roxburghii	Rroxscaffold_4G00283250
rosa_rugosa	Rorug01G0385000
rosa_samantha	Rh1AG396500 Rh1BG360600 Rh1CG374000 Rh1DG391400
rosa_wichuraiana	Rw1G035150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	893
Acc16I	TGCGCA	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	854
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	2 cut(s)	417, 701
AccI	GTMKAC	1 cut(s)	1069
AccII	CGCG	1 cut(s)	582
AciI	CCGC	2 cut(s)	206, 456
AcsI	RAATTY	2 cut(s)	34, 486
AfaI	GTAC	4 cut(s)	92, 419, 462, 677
AfiI	CCNNNNNNNGG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	258
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	5 cut(s)	98, 119, 151, 485, 577
AhlI	ACTAGT	1 cut(s)	250
AjiI	CACGTC	1 cut(s)	619
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	6 cut(s)	155, 475, 647, 668, 992, 1039
AluI	AGCT	6 cut(s)	155, 475, 647, 668, 992, 1039
Alw26I	GTCTC	1 cut(s)	6
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	551, 989
ApoI	RAATTY	2 cut(s)	34, 486
AsiGI	ACCGGT	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	417
AspLEI	GCGC	5 cut(s)	88, 363, 582, 584, 751
AspS9I	GGNCC	2 cut(s)	124, 920
AsuC2I	CCSGG	2 cut(s)	49, 320
AsuHPI	GGTGA	8 cut(s)	197, 239, 287, 389, 445, 634, 775, 856
AvaI	CYCGRG	1 cut(s)	141
AvaII	GGWCC	2 cut(s)	124, 920
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BanI	GGYRCC	2 cut(s)	417, 701
BbvI	GCAGC	2 cut(s)	538, 1001
BccI	CCATC	4 cut(s)	472, 682, 764, 1096
BceAI	ACGGC	2 cut(s)	382, 1072
BcnI	CCSGG	2 cut(s)	49, 320
BcoDI	GTCTC	1 cut(s)	6
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	2 cut(s)	251, 291
BfoI	RGCGCY	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	854
BisI	GCNGC	2 cut(s)	552, 990
BlsI	GCNGC	2 cut(s)	553, 991
Bme1390I	CCNGG	2 cut(s)	49, 320
Bme18I	GGWCC	2 cut(s)	124, 920
BmeT110I	CYCGRG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	2 cut(s)	124, 920
BmiI	GGNNCC	4 cut(s)	419, 524, 703, 1014
BmrFI	CCNGG	2 cut(s)	49, 320
BmsI	GCATC	2 cut(s)	67, 703
BpmI	CTGGAG	1 cut(s)	491
BpuMI	CCSGG	2 cut(s)	49, 320
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	2 cut(s)	121, 126
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse118I	RCCGGY	2 cut(s)	126, 698
Bse1I	ACTGG	3 cut(s)	474, 1077, 1122
Bse3DI	GCAATG	2 cut(s)	938, 1066
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	2 cut(s)	718, 775
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	2 cut(s)	938, 1066
BseMII	CTCAG	2 cut(s)	48, 600
BseNI	ACTGG	3 cut(s)	474, 1077, 1122
BsePI	GCGCGC	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	538, 1001
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	2 cut(s)	417, 701
BshTI	ACCGGT	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	7 cut(s)	48, 122, 127, 319, 425, 699, 710
BslFI	GGGAC	2 cut(s)	335, 629
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	6
BsmBI	CGTCTC	1 cut(s)	6
BsmFI	GGGAC	2 cut(s)	335, 629
BsmI	GAATGC	1 cut(s)	973
BsnI	GGCC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	206, 456
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	49, 601
BspFNI	CGCG	1 cut(s)	582
BspLI	GGNNCC	4 cut(s)	419, 524, 703, 1014
BspMI	ACCTGC	1 cut(s)	854
BspT107I	GGYRCC	2 cut(s)	417, 701
BsrDI	GCAATG	2 cut(s)	938, 1066
BsrFI	RCCGGY	2 cut(s)	126, 698
BsrI	ACTGG	3 cut(s)	474, 1077, 1122
BssAI	RCCGGY	2 cut(s)	126, 698
BssECI	CCNNGG	1 cut(s)	364
BssHII	GCGCGC	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	928
Bst6I	CTCTTC	1 cut(s)	1007
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	4 cut(s)	204, 381, 582, 952
BstDEI	CTNAG	2 cut(s)	57, 609
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	718, 775
BstFNI	CGCG	1 cut(s)	582
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	5 cut(s)	88, 363, 582, 584, 751
BstMAI	GTCTC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNSI	RCATGY	2 cut(s)	206, 262
BstSCI	CCNGG	2 cut(s)	47, 318
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	538, 1001
BstXI	CCANNNNNNTGG	1 cut(s)	930
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	364
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	718, 775
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 467
BveI	ACCTGC	1 cut(s)	854
Cac8I	GCNNGC	4 cut(s)	204, 381, 582, 952
CfoI	GCGC	5 cut(s)	88, 363, 582, 584, 751
Cfr10I	RCCGGY	2 cut(s)	126, 698
Cfr13I	GGNCC	2 cut(s)	124, 920
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	4 cut(s)	91, 418, 461, 676
CspAI	ACCGGT	1 cut(s)	126
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	6 cut(s)	203, 259, 491, 566, 627, 793
CviQI	GTAC	4 cut(s)	91, 418, 461, 676
DdeI	CTNAG	2 cut(s)	57, 609
Eam1104I	CTCTTC	1 cut(s)	1007
EarI	CTCTTC	1 cut(s)	1007
Eco47I	GGWCC	2 cut(s)	124, 920
Eco88I	CYCGRG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	6 cut(s)	206, 262, 494, 569, 630, 796
FaqI	GGGAC	2 cut(s)	335, 629
FatI	CATG	6 cut(s)	202, 258, 490, 565, 626, 792
FblI	GTMKAC	1 cut(s)	1069
Fnu4HI	GCNGC	2 cut(s)	552, 990
FokI	GGATG	2 cut(s)	725, 782
Fsp4HI	GCNGC	2 cut(s)	552, 990
FspAI	RTGCGCAY	1 cut(s)	750
FspBI	CTAG	2 cut(s)	251, 291
FspI	TGCGCA	1 cut(s)	750
GlaI	GCGC	5 cut(s)	87, 362, 581, 583, 750
GluI	GCNGC	2 cut(s)	552, 990
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	7 cut(s)	48, 122, 127, 319, 425, 699, 710
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	5 cut(s)	88, 363, 582, 584, 751
Hin1II	CATG	6 cut(s)	206, 262, 494, 569, 630, 796
Hin6I	GCGC	5 cut(s)	86, 361, 580, 582, 749
HinP1I	GCGC	5 cut(s)	86, 361, 580, 582, 749
HindIII	AAGCTT	2 cut(s)	153, 666
HinfI	GANTC	5 cut(s)	428, 502, 847, 999, 1121
HpaII	CCGG	7 cut(s)	48, 122, 127, 319, 425, 699, 710
HphI	GGTGA	8 cut(s)	197, 239, 287, 389, 445, 634, 775, 856
Hpy166II	GTNNAC	5 cut(s)	132, 256, 498, 676, 1070
Hpy188I	TCNGA	2 cut(s)	180, 1044
Hpy8I	GTNNAC	5 cut(s)	132, 256, 498, 676, 1070
HpyAV	CCTTC	6 cut(s)	104, 280, 289, 407, 760, 852
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4IV	ACGT	3 cut(s)	15, 134, 618
HpyCH4V	TGCA	7 cut(s)	196, 248, 379, 554, 938, 971, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	57, 609
HpySE526I	ACGT	3 cut(s)	15, 134, 618
Hsp92II	CATG	6 cut(s)	206, 262, 494, 569, 630, 796
HspAI	GCGC	5 cut(s)	86, 361, 580, 582, 749
KpnI	GGTACC	1 cut(s)	421
LmnI	GCTCC	2 cut(s)	472, 1012
Lsp1109I	GCAGC	2 cut(s)	538, 1001
LweI	GCATC	2 cut(s)	67, 703
MaeI	CTAG	2 cut(s)	251, 291
MaeII	ACGT	3 cut(s)	15, 134, 618
MaeIII	GTNAC	3 cut(s)	275, 433, 622
MboII	GAAGA	3 cut(s)	86, 994, 1060
MluCI	AATT	9 cut(s)	34, 165, 447, 486, 538, 639, 810, 819, 1030
MlyI	GAGTC	3 cut(s)	422, 993, 1115
MmeI	TCCRAC	1 cut(s)	947
MnlI	CCTC	9 cut(s)	97, 100, 150, 181, 606, 892, 907, 976, 1106
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	201, 725
MspA1I	CMGCKG	1 cut(s)	992
MspI	CCGG	7 cut(s)	48, 122, 127, 319, 425, 699, 710
MspR9I	CCNGG	2 cut(s)	49, 320
Mva1269I	GAATGC	1 cut(s)	973
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	1 cut(s)	208
NciI	CCSGG	2 cut(s)	49, 320
NlaIII	CATG	6 cut(s)	206, 262, 494, 569, 630, 796
NlaIV	GGNNCC	4 cut(s)	419, 524, 703, 1014
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	2 cut(s)	275, 622
NsbI	TGCGCA	1 cut(s)	750
NspI	RCATGY	2 cut(s)	206, 262
OliI	CACNNNNGTG	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	141
PauI	GCGCGC	1 cut(s)	580
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PctI	GAATGC	1 cut(s)	973
PfeI	GAWTC	2 cut(s)	502, 847
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	553, 991
PleI	GAGTC	3 cut(s)	422, 993, 1115
PpsI	GAGTC	3 cut(s)	422, 993, 1115
PscI	ACATGT	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	893
PspN4I	GGNNCC	4 cut(s)	419, 524, 703, 1014
PspPI	GGNCC	2 cut(s)	124, 920
PspXI	VCTCGAGB	1 cut(s)	141
PteI	GCGCGC	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	4 cut(s)	92, 419, 462, 677
RsaNI	GTAC	4 cut(s)	91, 418, 461, 676
RseI	CAYNNNNRTG	2 cut(s)	201, 725
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	552, 990
Sau96I	GGNCC	2 cut(s)	124, 920
SchI	GAGTC	3 cut(s)	422, 993, 1115
ScrFI	CCNGG	2 cut(s)	49, 320
SfaNI	GCATC	2 cut(s)	67, 703
Sfr274I	CTCGAG	1 cut(s)	141
SinI	GGWCC	2 cut(s)	124, 920
SlaI	CTCGAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	201, 725
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
SpeI	ACTAGT	1 cut(s)	250
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	9 cut(s)	34, 165, 447, 486, 538, 639, 810, 819, 1030
SsiI	CCGC	2 cut(s)	206, 456
SspMI	CTAG	2 cut(s)	251, 291
StyD4I	CCNGG	2 cut(s)	47, 318
TaaI	ACNGT	1 cut(s)	928
TaiI	ACGT	3 cut(s)	18, 137, 621
TaqI	TCGA	2 cut(s)	142, 1005
TasI	AATT	9 cut(s)	34, 165, 447, 486, 538, 639, 810, 819, 1030
TatI	WGTACW	2 cut(s)	90, 675
TfiI	GAWTC	2 cut(s)	502, 847
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	355, 474
TseFI	GTSAC	2 cut(s)	275, 622
TseI	GCWGC	2 cut(s)	551, 989
Tsp45I	GTSAC	2 cut(s)	275, 622
TspDTI	ATGAA	5 cut(s)	87, 479, 809, 1038, 1061
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	2 cut(s)	355, 474
VpaK11BI	GGWCC	2 cut(s)	124, 920
XapI	RAATTY	2 cut(s)	34, 486
XceI	RCATGY	2 cut(s)	206, 262
XhoI	CTCGAG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	1069
XspI	CTAG	2 cut(s)	251, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.