Prupe.2G280000_v2.0.a1

Pentatricopeptide repeat-containing protein At4g25270

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
27947184 .. 27948743
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G280000.1

Sequence Viewer

Length: 1560 bp
ATGGTGACCACTTTACAACCGCTAAGTTTCCACACCGCAAAACTGAGCATCTGCTCTTCCAAGAGCAAGAAAAACAAGAAGCAAAAACAAGTTAGCCAAAATCAAAGCAACAACTCCCTCTCTTTCCCGAAAACAATCCCAACCCCCCTCATTATCTGCCATAAACCCCATTCCCAGACCAAGCTCCAAGCCCTCGACGCCGTCGTCAATGACCTTGAAGCAGCCATTGGTAAAGGCATAAACGTCGATACCGAAACTTTTGCTTCCCTGTTAGAAACATGCTATCAATTTCAAGCCATGGACTACGGTCTCCGAGTTCACCGTCTTATCCCAAGAAGCGTTTTACGTAGAAATGTAGGCATCTCGTCCAAGCTTCTTCGGCTCTATGCTTCGCATGGCTATATCGAGGAGGCTCACCAGGTGTTTGATGAAATGCCTAAGAGGGACGTGTCTGCTTTCGCCTGGAATTCACTTATCTCGGGGTATGCAGAACTGGGTTTGTATGAGGATGCTATGGCGCTATACTTCCAAATGGAGGAAGAGGGAGTTGAACCAGACCGGTTCACGTTCCCTCGTGTTTTGAAAGCTTGTGGGGGAATAGGGTTCATTCAAATAGGTGAGGCTGTGCATCGCCATATAGTGCGATTGGGTTTATTGAATGATAGGTTTGTGCTGAATGCATTGGTGGACATGTATGCCAAATGTGGTGACATTGTGAAGGCTCGGAAAGTGTTTGATAAGATTACTAGTCGAGACCACGTCTCTTGGAACACCATGCTCACGAGTTATATGCGTCATGGGCTTCTGTCGCAGGCTTTGGACATCTTTCATGAAATGCTTCATGAAGGGCACCAGGCAGACTCTGTTGCCATATCCACTATCCTCGGAGCTGCAGAGTCATCATTGGAGATTGTAATTCAAATCCATGGATGGGTAATTCGGCAAGGAGTTGAGTGGAACTTGTCTATTGCCAATGCCTTGATTGCAGCGTATTCGAATCATCGCAAGTTGAATCGAGCAAGGTGGTTGTTTTGTCATATGTCTGAGAGGGATGTCATAACATGGAATACTATGATTTCAGCTCATTCTAAAAGCCCGGAAGCCTTGCTGTTTTTTGAGCAGATGGAGAGTTCTGGTGCCTTGCCAGACAGTATCACATTCGTGTCAATATTATCGACTTGTGCCCATTTAGGTTTGGTGAAGGATGGTGAGAGGTTATATTCTGTCATGAAAAATAGATATAGAATTAGCCCAATTATGGAGCATTATGCTTGTATGGTGAATCTTTACGGAAGGGCAGGTCGAATCAGAGAAGCTTATGGTATCATAGTGGATGGAATGGAGTTCGAGGCTGGTCCAACTGTGTGGGGTGCATTACTGTATGCTTGCTACCTTCATGGCAATGTAGATATTGGAGAGGTTGCAGCTGAAAGGCTTTTTGAGCTGGAGCCTGATAATGAATACAATTTTGAGCTTTTAATTAAGATTTATGGCAATGTGGGTAGATTGGAAGATGTGGAGAGAGTGAGATTGATGATGGTGGAGAGAGGATTGGACTAA

Protein Analysis

520

Amino Acids

58.62

Weight (kDa)

6.48

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25270
fragaria_vesca FvH4_7g27870
malus_domestica MD00G1104900.v1.1
prunus_persica Prupe.2G280000_v2.0.a1
pyrus_communis pycom01g19550
rosa_chinensis RchiOBHm_Chr1g0374811
rosa_laevigata RLG00000026713
rosa_multiflora Rmu_co8506051.1_g000002 Rmu_sc0004947.1_g000023
rosa_roxburghii Rroxscaffold_4G00283250
rosa_rugosa Rorug01G0385000
rosa_samantha Rh1AG396500 Rh1BG360600 Rh1CG374000 Rh1DG391400
rosa_wichuraiana Rw1G035150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 1289
AccB1I GGYRCC 2 cut(s) 849, 1136
AciI CCGC 2 cut(s) 20, 36
AcsI RAATTY 1 cut(s) 466
AcyI GRCGYC 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 421
AfiI CCNNNNNNNGG 3 cut(s) 535, 931, 1258
AflIII ACRYGT 2 cut(s) 447, 690
AgeI ACCGGT 1 cut(s) 558
AgsI TTSAA 8 cut(s) 218, 293, 551, 583, 611, 658, 920, 1012
AhlI ACTAGT 1 cut(s) 746
AjiI CACGTC 2 cut(s) 448, 760
AjnI CCWGG 3 cut(s) 417, 461, 852
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AleI CACNNNNGTG 1 cut(s) 1160
AluBI AGCT 9 cut(s) 184, 373, 587, 890, 1082, 1316, 1427, 1444, 1474
AluI AGCT 9 cut(s) 184, 373, 587, 890, 1082, 1316, 1427, 1444, 1474
Alw26I GTCTC 3 cut(s) 314, 747, 766
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 478
ApeKI GCWGC 4 cut(s) 221, 890, 986, 1424
ApoI RAATTY 1 cut(s) 466
AsiGI ACCGGT 1 cut(s) 558
Asp700I GAANNNNTTC 1 cut(s) 837
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 1355
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 8 cut(s) 16, 311, 407, 629, 719, 1210, 1220, 1291
AsuII TTCGAA 1 cut(s) 995
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 1 cut(s) 1355
BaeGI GKGCMC 2 cut(s) 852, 1186
BanI GGYRCC 2 cut(s) 849, 1136
BauI CACGAG 2 cut(s) 573, 781
BbvI GCAGC 4 cut(s) 233, 877, 998, 1436
BccI CCATC 5 cut(s) 924, 1117, 1199, 1328, 1531
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 8 cut(s) 226, 242, 260, 276, 772, 806, 975, 1009
BciT130I CCWGG 3 cut(s) 419, 463, 854
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 3 cut(s) 314, 747, 766
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 1 cut(s) 891
BfoI RGCGCY 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 1289
BisI GCNGC 4 cut(s) 222, 891, 987, 1425
BlsI GCNGC 4 cut(s) 223, 892, 988, 1426
Bme1390I CCNGG 4 cut(s) 419, 463, 854, 1097
Bme18I GGWCC 1 cut(s) 1355
BmeT110I CYCGRG 1 cut(s) 478
BmgBI CACGTC 2 cut(s) 448, 760
BmgT120I GGNCC 1 cut(s) 1355
BmiI GGNNCC 3 cut(s) 851, 1138, 1449
BmrFI CCNGG 4 cut(s) 419, 463, 854, 1097
BmrI ACTGGG 1 cut(s) 503
BmsI GCATC 4 cut(s) 57, 369, 499, 637
BmuI ACTGGG 1 cut(s) 503
BoxI GACNNNNGTC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 1466
Bpu14I TTCGAA 1 cut(s) 995
BpuMI CCSGG 1 cut(s) 1097
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 2 cut(s) 314, 747
BsaJI CCNNGG 3 cut(s) 297, 883, 925
BsaWI WCCGGW 1 cut(s) 558
Bsc4I CCNNNNNNNGG 3 cut(s) 535, 931, 1258
Bse118I RCCGGY 1 cut(s) 558
Bse1I ACTGG 1 cut(s) 498
Bse3DI GCAATG 2 cut(s) 1408, 1501
BseBI CCWGG 3 cut(s) 419, 463, 854
BseDI CCNNGG 3 cut(s) 297, 883, 925
BseGI GGATG 5 cut(s) 514, 935, 1057, 1210, 1339
BseLI CCNNNNNNNGG 3 cut(s) 535, 931, 1258
BseMI GCAATG 2 cut(s) 1408, 1501
BseMII CTCAG 2 cut(s) 35, 1035
BseNI ACTGG 1 cut(s) 498
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 2 cut(s) 852, 1186
BseXI GCAGC 4 cut(s) 233, 877, 998, 1436
BshNI GGYRCC 2 cut(s) 849, 1136
BshTI ACCGGT 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 2 cut(s) 559, 1097
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 3 cut(s) 535, 931, 1258
BsmAI GTCTC 3 cut(s) 314, 747, 766
BsmBI CGTCTC 1 cut(s) 766
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 682
Bso31I GGTCTC 2 cut(s) 314, 747
BsoBI CYCGRG 1 cut(s) 478
Bsp119I TTCGAA 1 cut(s) 995
Bsp1286I GDGCHC 2 cut(s) 852, 1186
Bsp19I CCATGG 2 cut(s) 297, 925
BspACI CCGC 2 cut(s) 20, 36
BspCNI CTCAG 2 cut(s) 36, 1036
BspHI TCATGA 3 cut(s) 829, 841, 1227
BspLI GGNNCC 3 cut(s) 851, 1138, 1449
BspMAI CTGCAG 1 cut(s) 895
BspMI ACCTGC 1 cut(s) 1289
BspQI GCTCTTC 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 995
BspT107I GGYRCC 2 cut(s) 849, 1136
BspTNI GGTCTC 2 cut(s) 314, 747
BsrDI GCAATG 2 cut(s) 1408, 1501
BsrFI RCCGGY 1 cut(s) 558
BsrI ACTGG 1 cut(s) 498
BssAI RCCGGY 1 cut(s) 558
BssECI CCNNGG 3 cut(s) 297, 883, 925
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 2 cut(s) 573, 781
BssT1I CCWWGG 2 cut(s) 297, 925
Bst2BI CACGAG 2 cut(s) 573, 781
Bst2UI CCWGG 3 cut(s) 419, 463, 854
Bst4CI ACNGT 5 cut(s) 308, 323, 1151, 1363, 1380
Bst6I CTCTTC 2 cut(s) 61, 534
BstACI GRCGYC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 347
BstBI TTCGAA 1 cut(s) 995
BstC8I GCNNGC 2 cut(s) 813, 1387
BstDEI CTNAG 4 cut(s) 23, 44, 438, 1044
BstDSI CCRYGG 2 cut(s) 297, 925
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 5 cut(s) 514, 935, 1057, 1210, 1339
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 1 cut(s) 520
BstMAI GTCTC 3 cut(s) 314, 747, 766
BstMWI GCNNNNNNNGC 6 cut(s) 197, 379, 799, 808, 983, 1441
BstNI CCWGG 3 cut(s) 419, 463, 854
BstNSI RCATGY 2 cut(s) 282, 694
BstPAI GACNNNNGTC 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 4 cut(s) 417, 461, 852, 1095
BstSFI CTRYAG 1 cut(s) 891
BstSLI GKGCMC 2 cut(s) 852, 1186
BstSNI TACGTA 1 cut(s) 347
BstV1I GCAGC 4 cut(s) 233, 877, 998, 1436
BstXI CCANNNNNNTGG 1 cut(s) 1365
BtgI CCRYGG 2 cut(s) 297, 925
BtgZI GCGATG 2 cut(s) 614, 986
BtrI CACGTC 2 cut(s) 448, 760
BtsCI GGATG 5 cut(s) 514, 935, 1057, 1210, 1339
BveI ACCTGC 1 cut(s) 1289
Cac8I GCNNGC 2 cut(s) 813, 1387
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 3 cut(s) 829, 841, 1227
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 558
Cfr13I GGNCC 1 cut(s) 1355
CseI GACGC 2 cut(s) 206, 782
CsiI ACCWGGT 1 cut(s) 417
CspAI ACCGGT 1 cut(s) 558
CspCI CAANNNNNGTGG 2 cut(s) 746, 781
DdeI CTNAG 4 cut(s) 23, 44, 438, 1044
DraIII CACNNNGTG 1 cut(s) 421
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 2 cut(s) 61, 534
EarI CTCTTC 2 cut(s) 61, 534
Eco105I TACGTA 1 cut(s) 347
Eco130I CCWWGG 2 cut(s) 297, 925
Eco31I GGTCTC 2 cut(s) 314, 747
Eco47I GGWCC 1 cut(s) 1355
Eco88I CYCGRG 1 cut(s) 478
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 466
EcoRII CCWGG 3 cut(s) 417, 461, 852
EcoT14I CCWWGG 2 cut(s) 297, 925
EcoT22I ATGCAT 1 cut(s) 682
ErhI CCWWGG 2 cut(s) 297, 925
Esp3I CGTCTC 1 cut(s) 766
FaqI GGGAC 1 cut(s) 458
FauNDI CATATG 1 cut(s) 1038
Fnu4HI GCNGC 4 cut(s) 222, 891, 987, 1425
FokI GGATG 5 cut(s) 521, 942, 1064, 1217, 1346
Fsp4HI GCNGC 4 cut(s) 222, 891, 987, 1425
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 519
GluI GCNGC 4 cut(s) 222, 891, 987, 1425
GsuI CTGGAG 1 cut(s) 1466
HaeII RGCGCY 1 cut(s) 521
HapII CCGG 2 cut(s) 559, 1097
HgaI GACGC 2 cut(s) 206, 782
HhaI GCGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HindIII AAGCTT 3 cut(s) 371, 585, 1314
HinfI GANTC 6 cut(s) 860, 896, 997, 1012, 1282, 1305
HpaII CCGG 2 cut(s) 559, 1097
HphI GGTGA 8 cut(s) 16, 311, 407, 629, 719, 1210, 1220, 1291
Hpy166II GTNNAC 3 cut(s) 319, 564, 688
Hpy188I TCNGA 5 cut(s) 314, 726, 887, 1045, 1310
Hpy188III TCNNGA 6 cut(s) 127, 752, 781, 830, 842, 1228
Hpy8I GTNNAC 3 cut(s) 319, 564, 688
Hpy99I CGWCG 3 cut(s) 200, 206, 248
HpyAV CCTTC 5 cut(s) 712, 839, 1195, 1287, 1403
HpyCH4III ACNGT 5 cut(s) 308, 323, 1151, 1363, 1380
HpyCH4IV ACGT 5 cut(s) 243, 346, 447, 566, 759
HpyCH4V TGCA 7 cut(s) 488, 628, 680, 893, 986, 1373, 1424
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 379, 799, 808, 983, 1441
HpyF3I CTNAG 4 cut(s) 23, 44, 438, 1044
HpySE526I ACGT 5 cut(s) 243, 346, 447, 566, 759
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 1 cut(s) 518
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 4 cut(s) 189, 887, 1261, 1447
Lsp1109I GCAGC 4 cut(s) 233, 877, 998, 1436
LweI GCATC 4 cut(s) 57, 369, 499, 637
MabI ACCWGGT 1 cut(s) 417
MaeI CTAG 1 cut(s) 747
MaeII ACGT 5 cut(s) 243, 346, 447, 566, 759
MaeIII GTNAC 2 cut(s) 4, 707
MboII GAAGA 4 cut(s) 48, 368, 551, 1523
MhlI GDGCHC 2 cut(s) 852, 1186
MluCI AATT 8 cut(s) 287, 466, 915, 936, 1245, 1254, 1465, 1479
MlyI GAGTC 2 cut(s) 854, 905
MmeI TCCRAC 1 cut(s) 1382
Mph1103I ATGCAT 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 837
MseI TTAA 2 cut(s) 1478, 1482
MslI CAYNNNNRTG 2 cut(s) 1160, 1401
MspA1I CMGCKG 1 cut(s) 1427
MspI CCGG 2 cut(s) 559, 1097
MspR9I CCNGG 4 cut(s) 419, 463, 854, 1097
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 3 cut(s) 419, 463, 854
MwoI GCNNNNNNNGC 6 cut(s) 197, 379, 799, 808, 983, 1441
NciI CCSGG 1 cut(s) 1097
NcoI CCATGG 2 cut(s) 297, 925
NdeI CATATG 1 cut(s) 1038
NlaIV GGNNCC 3 cut(s) 851, 1138, 1449
NmuCI GTSAC 2 cut(s) 4, 707
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 2 cut(s) 282, 694
NspV TTCGAA 1 cut(s) 995
OliI CACNNNNGTG 1 cut(s) 1160
PacI TTAATTAA 1 cut(s) 1482
PagI TCATGA 3 cut(s) 829, 841, 1227
PciI ACATGT 1 cut(s) 690
PciSI GCTCTTC 1 cut(s) 61
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 249
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 4 cut(s) 997, 1012, 1282, 1305
PflFI GACNNNGTC 2 cut(s) 200, 758
PinAI ACCGGT 1 cut(s) 558
PkrI GCNGC 4 cut(s) 223, 892, 988, 1426
PleI GAGTC 2 cut(s) 854, 904
PpsI GAGTC 2 cut(s) 854, 904
Ppu21I YACGTR 1 cut(s) 347
PscI ACATGT 1 cut(s) 690
PshAI GACNNNNGTC 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 417, 461, 852
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 3 cut(s) 417, 461, 852
PspN4I GGNNCC 3 cut(s) 851, 1138, 1449
PspPI GGNCC 1 cut(s) 1355
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 863
PsyI GACNNNGTC 2 cut(s) 200, 758
PvuII CAGCTG 1 cut(s) 1427
RseI CAYNNNNRTG 2 cut(s) 1160, 1401
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 1478, 1482
SatI GCNGC 4 cut(s) 222, 891, 987, 1425
Sau96I GGNCC 1 cut(s) 1355
SchI GAGTC 2 cut(s) 854, 905
ScrFI CCNGG 4 cut(s) 419, 463, 854, 1097
SduI GDGCHC 2 cut(s) 852, 1186
SexAI ACCWGGT 1 cut(s) 417
SfaNI GCATC 4 cut(s) 57, 369, 499, 637
SfcI CTRYAG 1 cut(s) 891
SfuI TTCGAA 1 cut(s) 995
SinI GGWCC 1 cut(s) 1355
SmiMI CAYNNNNRTG 2 cut(s) 1160, 1401
SnaBI TACGTA 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 8 cut(s) 287, 466, 915, 936, 1245, 1254, 1465, 1479
SsiI CCGC 2 cut(s) 20, 36
SspI AATATT 1 cut(s) 1170
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 4 cut(s) 417, 461, 852, 1095
StyI CCWWGG 2 cut(s) 297, 925
TaaI ACNGT 5 cut(s) 308, 323, 1151, 1363, 1380
TaiI ACGT 5 cut(s) 246, 349, 450, 569, 762
TaqI TCGA 9 cut(s) 195, 246, 405, 751, 995, 1015, 1175, 1303, 1347
TasI AATT 8 cut(s) 287, 466, 915, 936, 1245, 1254, 1465, 1479
TfiI GAWTC 4 cut(s) 997, 1012, 1282, 1305
Tru1I TTAA 2 cut(s) 1478, 1482
Tru9I TTAA 2 cut(s) 1478, 1482
TseFI GTSAC 2 cut(s) 4, 707
TseI GCWGC 4 cut(s) 221, 890, 986, 1424
Tsp45I GTSAC 2 cut(s) 4, 707
TspDTI ATGAA 9 cut(s) 444, 595, 818, 830, 846, 858, 1244, 1385, 1473
TspGWI ACGGA 1 cut(s) 1305
Tth111I GACNNNGTC 2 cut(s) 200, 758
VpaK11BI GGWCC 1 cut(s) 1355
XapI RAATTY 1 cut(s) 466
XceI RCATGY 2 cut(s) 282, 694
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 1 cut(s) 747
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.