Pentatricopeptide repeat-containing protein At4g25270
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25270 |
| fragaria_vesca | FvH4_7g27870 |
| malus_domestica | MD00G1104900.v1.1 |
| prunus_persica | Prupe.2G280000_v2.0.a1 |
| pyrus_communis | pycom01g19550 |
| rosa_chinensis | RchiOBHm_Chr1g0374811 |
| rosa_laevigata | RLG00000026713 |
| rosa_multiflora | Rmu_co8506051.1_g000002 Rmu_sc0004947.1_g000023 |
| rosa_roxburghii | Rroxscaffold_4G00283250 |
| rosa_rugosa | Rorug01G0385000 |
| rosa_samantha | Rh1AG396500 Rh1BG360600 Rh1CG374000 Rh1DG391400 |
| rosa_wichuraiana | Rw1G035150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 203 |
| Acc36I | ACCTGC | 1 cut(s) | 1289 |
| AccB1I | GGYRCC | 2 cut(s) | 849, 1136 |
| AciI | CCGC | 2 cut(s) | 20, 36 |
| AcsI | RAATTY | 1 cut(s) | 466 |
| AcyI | GRCGYC | 1 cut(s) | 198 |
| AdeI | CACNNNGTG | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 535, 931, 1258 |
| AflIII | ACRYGT | 2 cut(s) | 447, 690 |
| AgeI | ACCGGT | 1 cut(s) | 558 |
| AgsI | TTSAA | 8 cut(s) | 218, 293, 551, 583, 611, 658, 920, 1012 |
| AhlI | ACTAGT | 1 cut(s) | 746 |
| AjiI | CACGTC | 2 cut(s) | 448, 760 |
| AjnI | CCWGG | 3 cut(s) | 417, 461, 852 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 210, 242 |
| AleI | CACNNNNGTG | 1 cut(s) | 1160 |
| AluBI | AGCT | 9 cut(s) | 184, 373, 587, 890, 1082, 1316, 1427, 1444, 1474 |
| AluI | AGCT | 9 cut(s) | 184, 373, 587, 890, 1082, 1316, 1427, 1444, 1474 |
| Alw26I | GTCTC | 3 cut(s) | 314, 747, 766 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 863 |
| Ama87I | CYCGRG | 1 cut(s) | 478 |
| ApeKI | GCWGC | 4 cut(s) | 221, 890, 986, 1424 |
| ApoI | RAATTY | 1 cut(s) | 466 |
| AsiGI | ACCGGT | 1 cut(s) | 558 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 837 |
| AspLEI | GCGC | 1 cut(s) | 520 |
| AspS9I | GGNCC | 1 cut(s) | 1355 |
| AsuC2I | CCSGG | 1 cut(s) | 1097 |
| AsuHPI | GGTGA | 8 cut(s) | 16, 311, 407, 629, 719, 1210, 1220, 1291 |
| AsuII | TTCGAA | 1 cut(s) | 995 |
| AvaI | CYCGRG | 1 cut(s) | 478 |
| AvaII | GGWCC | 1 cut(s) | 1355 |
| BaeGI | GKGCMC | 2 cut(s) | 852, 1186 |
| BanI | GGYRCC | 2 cut(s) | 849, 1136 |
| BauI | CACGAG | 2 cut(s) | 573, 781 |
| BbvI | GCAGC | 4 cut(s) | 233, 877, 998, 1436 |
| BccI | CCATC | 5 cut(s) | 924, 1117, 1199, 1328, 1531 |
| BceAI | ACGGC | 1 cut(s) | 185 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 226, 242, 260, 276, 772, 806, 975, 1009 |
| BciT130I | CCWGG | 3 cut(s) | 419, 463, 854 |
| BcnI | CCSGG | 1 cut(s) | 1097 |
| BcoDI | GTCTC | 3 cut(s) | 314, 747, 766 |
| BcuI | ACTAGT | 1 cut(s) | 746 |
| BfaI | CTAG | 1 cut(s) | 747 |
| BfmI | CTRYAG | 1 cut(s) | 891 |
| BfoI | RGCGCY | 1 cut(s) | 521 |
| BfuAI | ACCTGC | 1 cut(s) | 1289 |
| BisI | GCNGC | 4 cut(s) | 222, 891, 987, 1425 |
| BlsI | GCNGC | 4 cut(s) | 223, 892, 988, 1426 |
| Bme1390I | CCNGG | 4 cut(s) | 419, 463, 854, 1097 |
| Bme18I | GGWCC | 1 cut(s) | 1355 |
| BmeT110I | CYCGRG | 1 cut(s) | 478 |
| BmgBI | CACGTC | 2 cut(s) | 448, 760 |
| BmgT120I | GGNCC | 1 cut(s) | 1355 |
| BmiI | GGNNCC | 3 cut(s) | 851, 1138, 1449 |
| BmrFI | CCNGG | 4 cut(s) | 419, 463, 854, 1097 |
| BmrI | ACTGGG | 1 cut(s) | 503 |
| BmsI | GCATC | 4 cut(s) | 57, 369, 499, 637 |
| BmuI | ACTGGG | 1 cut(s) | 503 |
| BoxI | GACNNNNGTC | 1 cut(s) | 306 |
| BpmI | CTGGAG | 1 cut(s) | 1466 |
| Bpu14I | TTCGAA | 1 cut(s) | 995 |
| BpuMI | CCSGG | 1 cut(s) | 1097 |
| BsaAI | YACGTR | 1 cut(s) | 347 |
| BsaHI | GRCGYC | 1 cut(s) | 198 |
| BsaI | GGTCTC | 2 cut(s) | 314, 747 |
| BsaJI | CCNNGG | 3 cut(s) | 297, 883, 925 |
| BsaWI | WCCGGW | 1 cut(s) | 558 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 535, 931, 1258 |
| Bse118I | RCCGGY | 1 cut(s) | 558 |
| Bse1I | ACTGG | 1 cut(s) | 498 |
| Bse3DI | GCAATG | 2 cut(s) | 1408, 1501 |
| BseBI | CCWGG | 3 cut(s) | 419, 463, 854 |
| BseDI | CCNNGG | 3 cut(s) | 297, 883, 925 |
| BseGI | GGATG | 5 cut(s) | 514, 935, 1057, 1210, 1339 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 535, 931, 1258 |
| BseMI | GCAATG | 2 cut(s) | 1408, 1501 |
| BseMII | CTCAG | 2 cut(s) | 35, 1035 |
| BseNI | ACTGG | 1 cut(s) | 498 |
| BseRI | GAGGAG | 1 cut(s) | 422 |
| BseSI | GKGCMC | 2 cut(s) | 852, 1186 |
| BseXI | GCAGC | 4 cut(s) | 233, 877, 998, 1436 |
| BshNI | GGYRCC | 2 cut(s) | 849, 1136 |
| BshTI | ACCGGT | 1 cut(s) | 558 |
| BsiHKCI | CYCGRG | 1 cut(s) | 478 |
| BsiSI | CCGG | 2 cut(s) | 559, 1097 |
| BslFI | GGGAC | 1 cut(s) | 458 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 535, 931, 1258 |
| BsmAI | GTCTC | 3 cut(s) | 314, 747, 766 |
| BsmBI | CGTCTC | 1 cut(s) | 766 |
| BsmFI | GGGAC | 1 cut(s) | 458 |
| BsmI | GAATGC | 1 cut(s) | 682 |
| Bso31I | GGTCTC | 2 cut(s) | 314, 747 |
| BsoBI | CYCGRG | 1 cut(s) | 478 |
| Bsp119I | TTCGAA | 1 cut(s) | 995 |
| Bsp1286I | GDGCHC | 2 cut(s) | 852, 1186 |
| Bsp19I | CCATGG | 2 cut(s) | 297, 925 |
| BspACI | CCGC | 2 cut(s) | 20, 36 |
| BspCNI | CTCAG | 2 cut(s) | 36, 1036 |
| BspHI | TCATGA | 3 cut(s) | 829, 841, 1227 |
| BspLI | GGNNCC | 3 cut(s) | 851, 1138, 1449 |
| BspMAI | CTGCAG | 1 cut(s) | 895 |
| BspMI | ACCTGC | 1 cut(s) | 1289 |
| BspQI | GCTCTTC | 1 cut(s) | 61 |
| BspT104I | TTCGAA | 1 cut(s) | 995 |
| BspT107I | GGYRCC | 2 cut(s) | 849, 1136 |
| BspTNI | GGTCTC | 2 cut(s) | 314, 747 |
| BsrDI | GCAATG | 2 cut(s) | 1408, 1501 |
| BsrFI | RCCGGY | 1 cut(s) | 558 |
| BsrI | ACTGG | 1 cut(s) | 498 |
| BssAI | RCCGGY | 1 cut(s) | 558 |
| BssECI | CCNNGG | 3 cut(s) | 297, 883, 925 |
| BssNI | GRCGYC | 1 cut(s) | 198 |
| BssSI | CACGAG | 2 cut(s) | 573, 781 |
| BssT1I | CCWWGG | 2 cut(s) | 297, 925 |
| Bst2BI | CACGAG | 2 cut(s) | 573, 781 |
| Bst2UI | CCWGG | 3 cut(s) | 419, 463, 854 |
| Bst4CI | ACNGT | 5 cut(s) | 308, 323, 1151, 1363, 1380 |
| Bst6I | CTCTTC | 2 cut(s) | 61, 534 |
| BstACI | GRCGYC | 1 cut(s) | 198 |
| BstBAI | YACGTR | 1 cut(s) | 347 |
| BstBI | TTCGAA | 1 cut(s) | 995 |
| BstC8I | GCNNGC | 2 cut(s) | 813, 1387 |
| BstDEI | CTNAG | 4 cut(s) | 23, 44, 438, 1044 |
| BstDSI | CCRYGG | 2 cut(s) | 297, 925 |
| BstEII | GGTNACC | 1 cut(s) | 4 |
| BstF5I | GGATG | 5 cut(s) | 514, 935, 1057, 1210, 1339 |
| BstH2I | RGCGCY | 1 cut(s) | 521 |
| BstHHI | GCGC | 1 cut(s) | 520 |
| BstMAI | GTCTC | 3 cut(s) | 314, 747, 766 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 197, 379, 799, 808, 983, 1441 |
| BstNI | CCWGG | 3 cut(s) | 419, 463, 854 |
| BstNSI | RCATGY | 2 cut(s) | 282, 694 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 306 |
| BstPI | GGTNACC | 1 cut(s) | 4 |
| BstSCI | CCNGG | 4 cut(s) | 417, 461, 852, 1095 |
| BstSFI | CTRYAG | 1 cut(s) | 891 |
| BstSLI | GKGCMC | 2 cut(s) | 852, 1186 |
| BstSNI | TACGTA | 1 cut(s) | 347 |
| BstV1I | GCAGC | 4 cut(s) | 233, 877, 998, 1436 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1365 |
| BtgI | CCRYGG | 2 cut(s) | 297, 925 |
| BtgZI | GCGATG | 2 cut(s) | 614, 986 |
| BtrI | CACGTC | 2 cut(s) | 448, 760 |
| BtsCI | GGATG | 5 cut(s) | 514, 935, 1057, 1210, 1339 |
| BveI | ACCTGC | 1 cut(s) | 1289 |
| Cac8I | GCNNGC | 2 cut(s) | 813, 1387 |
| CaiI | CAGNNNCTG | 1 cut(s) | 863 |
| CciI | TCATGA | 3 cut(s) | 829, 841, 1227 |
| CfoI | GCGC | 1 cut(s) | 520 |
| Cfr10I | RCCGGY | 1 cut(s) | 558 |
| Cfr13I | GGNCC | 1 cut(s) | 1355 |
| CseI | GACGC | 2 cut(s) | 206, 782 |
| CsiI | ACCWGGT | 1 cut(s) | 417 |
| CspAI | ACCGGT | 1 cut(s) | 558 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 746, 781 |
| DdeI | CTNAG | 4 cut(s) | 23, 44, 438, 1044 |
| DraIII | CACNNNGTG | 1 cut(s) | 421 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 203 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 203 |
| Eam1104I | CTCTTC | 2 cut(s) | 61, 534 |
| EarI | CTCTTC | 2 cut(s) | 61, 534 |
| Eco105I | TACGTA | 1 cut(s) | 347 |
| Eco130I | CCWWGG | 2 cut(s) | 297, 925 |
| Eco31I | GGTCTC | 2 cut(s) | 314, 747 |
| Eco47I | GGWCC | 1 cut(s) | 1355 |
| Eco88I | CYCGRG | 1 cut(s) | 478 |
| Eco91I | GGTNACC | 1 cut(s) | 4 |
| EcoO65I | GGTNACC | 1 cut(s) | 4 |
| EcoRI | GAATTC | 1 cut(s) | 466 |
| EcoRII | CCWGG | 3 cut(s) | 417, 461, 852 |
| EcoT14I | CCWWGG | 2 cut(s) | 297, 925 |
| EcoT22I | ATGCAT | 1 cut(s) | 682 |
| ErhI | CCWWGG | 2 cut(s) | 297, 925 |
| Esp3I | CGTCTC | 1 cut(s) | 766 |
| FaqI | GGGAC | 1 cut(s) | 458 |
| FauNDI | CATATG | 1 cut(s) | 1038 |
| Fnu4HI | GCNGC | 4 cut(s) | 222, 891, 987, 1425 |
| FokI | GGATG | 5 cut(s) | 521, 942, 1064, 1217, 1346 |
| Fsp4HI | GCNGC | 4 cut(s) | 222, 891, 987, 1425 |
| FspBI | CTAG | 1 cut(s) | 747 |
| GlaI | GCGC | 1 cut(s) | 519 |
| GluI | GCNGC | 4 cut(s) | 222, 891, 987, 1425 |
| GsuI | CTGGAG | 1 cut(s) | 1466 |
| HaeII | RGCGCY | 1 cut(s) | 521 |
| HapII | CCGG | 2 cut(s) | 559, 1097 |
| HgaI | GACGC | 2 cut(s) | 206, 782 |
| HhaI | GCGC | 1 cut(s) | 520 |
| Hin1I | GRCGYC | 1 cut(s) | 198 |
| Hin6I | GCGC | 1 cut(s) | 518 |
| HinP1I | GCGC | 1 cut(s) | 518 |
| HindIII | AAGCTT | 3 cut(s) | 371, 585, 1314 |
| HinfI | GANTC | 6 cut(s) | 860, 896, 997, 1012, 1282, 1305 |
| HpaII | CCGG | 2 cut(s) | 559, 1097 |
| HphI | GGTGA | 8 cut(s) | 16, 311, 407, 629, 719, 1210, 1220, 1291 |
| Hpy166II | GTNNAC | 3 cut(s) | 319, 564, 688 |
| Hpy188I | TCNGA | 5 cut(s) | 314, 726, 887, 1045, 1310 |
| Hpy188III | TCNNGA | 6 cut(s) | 127, 752, 781, 830, 842, 1228 |
| Hpy8I | GTNNAC | 3 cut(s) | 319, 564, 688 |
| Hpy99I | CGWCG | 3 cut(s) | 200, 206, 248 |
| HpyAV | CCTTC | 5 cut(s) | 712, 839, 1195, 1287, 1403 |
| HpyCH4III | ACNGT | 5 cut(s) | 308, 323, 1151, 1363, 1380 |
| HpyCH4IV | ACGT | 5 cut(s) | 243, 346, 447, 566, 759 |
| HpyCH4V | TGCA | 7 cut(s) | 488, 628, 680, 893, 986, 1373, 1424 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 197, 379, 799, 808, 983, 1441 |
| HpyF3I | CTNAG | 4 cut(s) | 23, 44, 438, 1044 |
| HpySE526I | ACGT | 5 cut(s) | 243, 346, 447, 566, 759 |
| Hsp92I | GRCGYC | 1 cut(s) | 198 |
| HspAI | GCGC | 1 cut(s) | 518 |
| LguI | GCTCTTC | 1 cut(s) | 61 |
| LmnI | GCTCC | 4 cut(s) | 189, 887, 1261, 1447 |
| Lsp1109I | GCAGC | 4 cut(s) | 233, 877, 998, 1436 |
| LweI | GCATC | 4 cut(s) | 57, 369, 499, 637 |
| MabI | ACCWGGT | 1 cut(s) | 417 |
| MaeI | CTAG | 1 cut(s) | 747 |
| MaeII | ACGT | 5 cut(s) | 243, 346, 447, 566, 759 |
| MaeIII | GTNAC | 2 cut(s) | 4, 707 |
| MboII | GAAGA | 4 cut(s) | 48, 368, 551, 1523 |
| MhlI | GDGCHC | 2 cut(s) | 852, 1186 |
| MluCI | AATT | 8 cut(s) | 287, 466, 915, 936, 1245, 1254, 1465, 1479 |
| MlyI | GAGTC | 2 cut(s) | 854, 905 |
| MmeI | TCCRAC | 1 cut(s) | 1382 |
| Mph1103I | ATGCAT | 1 cut(s) | 682 |
| MroXI | GAANNNNTTC | 1 cut(s) | 837 |
| MseI | TTAA | 2 cut(s) | 1478, 1482 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1160, 1401 |
| MspA1I | CMGCKG | 1 cut(s) | 1427 |
| MspI | CCGG | 2 cut(s) | 559, 1097 |
| MspR9I | CCNGG | 4 cut(s) | 419, 463, 854, 1097 |
| Mva1269I | GAATGC | 1 cut(s) | 682 |
| MvaI | CCWGG | 3 cut(s) | 419, 463, 854 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 197, 379, 799, 808, 983, 1441 |
| NciI | CCSGG | 1 cut(s) | 1097 |
| NcoI | CCATGG | 2 cut(s) | 297, 925 |
| NdeI | CATATG | 1 cut(s) | 1038 |
| NlaIV | GGNNCC | 3 cut(s) | 851, 1138, 1449 |
| NmuCI | GTSAC | 2 cut(s) | 4, 707 |
| NsiI | ATGCAT | 1 cut(s) | 682 |
| NspI | RCATGY | 2 cut(s) | 282, 694 |
| NspV | TTCGAA | 1 cut(s) | 995 |
| OliI | CACNNNNGTG | 1 cut(s) | 1160 |
| PacI | TTAATTAA | 1 cut(s) | 1482 |
| PagI | TCATGA | 3 cut(s) | 829, 841, 1227 |
| PciI | ACATGT | 1 cut(s) | 690 |
| PciSI | GCTCTTC | 1 cut(s) | 61 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 201, 249 |
| PctI | GAATGC | 1 cut(s) | 682 |
| PdmI | GAANNNNTTC | 1 cut(s) | 837 |
| PfeI | GAWTC | 4 cut(s) | 997, 1012, 1282, 1305 |
| PflFI | GACNNNGTC | 2 cut(s) | 200, 758 |
| PinAI | ACCGGT | 1 cut(s) | 558 |
| PkrI | GCNGC | 4 cut(s) | 223, 892, 988, 1426 |
| PleI | GAGTC | 2 cut(s) | 854, 904 |
| PpsI | GAGTC | 2 cut(s) | 854, 904 |
| Ppu21I | YACGTR | 1 cut(s) | 347 |
| PscI | ACATGT | 1 cut(s) | 690 |
| PshAI | GACNNNNGTC | 1 cut(s) | 306 |
| Psp6I | CCWGG | 3 cut(s) | 417, 461, 852 |
| PspEI | GGTNACC | 1 cut(s) | 4 |
| PspGI | CCWGG | 3 cut(s) | 417, 461, 852 |
| PspN4I | GGNNCC | 3 cut(s) | 851, 1138, 1449 |
| PspPI | GGNCC | 1 cut(s) | 1355 |
| PstI | CTGCAG | 1 cut(s) | 895 |
| PstNI | CAGNNNCTG | 1 cut(s) | 863 |
| PsyI | GACNNNGTC | 2 cut(s) | 200, 758 |
| PvuII | CAGCTG | 1 cut(s) | 1427 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1160, 1401 |
| SapI | GCTCTTC | 1 cut(s) | 61 |
| SaqAI | TTAA | 2 cut(s) | 1478, 1482 |
| SatI | GCNGC | 4 cut(s) | 222, 891, 987, 1425 |
| Sau96I | GGNCC | 1 cut(s) | 1355 |
| SchI | GAGTC | 2 cut(s) | 854, 905 |
| ScrFI | CCNGG | 4 cut(s) | 419, 463, 854, 1097 |
| SduI | GDGCHC | 2 cut(s) | 852, 1186 |
| SexAI | ACCWGGT | 1 cut(s) | 417 |
| SfaNI | GCATC | 4 cut(s) | 57, 369, 499, 637 |
| SfcI | CTRYAG | 1 cut(s) | 891 |
| SfuI | TTCGAA | 1 cut(s) | 995 |
| SinI | GGWCC | 1 cut(s) | 1355 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1160, 1401 |
| SnaBI | TACGTA | 1 cut(s) | 347 |
| SpeI | ACTAGT | 1 cut(s) | 746 |
| Sse9I | AATT | 8 cut(s) | 287, 466, 915, 936, 1245, 1254, 1465, 1479 |
| SsiI | CCGC | 2 cut(s) | 20, 36 |
| SspI | AATATT | 1 cut(s) | 1170 |
| SspMI | CTAG | 1 cut(s) | 747 |
| StyD4I | CCNGG | 4 cut(s) | 417, 461, 852, 1095 |
| StyI | CCWWGG | 2 cut(s) | 297, 925 |
| TaaI | ACNGT | 5 cut(s) | 308, 323, 1151, 1363, 1380 |
| TaiI | ACGT | 5 cut(s) | 246, 349, 450, 569, 762 |
| TaqI | TCGA | 9 cut(s) | 195, 246, 405, 751, 995, 1015, 1175, 1303, 1347 |
| TasI | AATT | 8 cut(s) | 287, 466, 915, 936, 1245, 1254, 1465, 1479 |
| TfiI | GAWTC | 4 cut(s) | 997, 1012, 1282, 1305 |
| Tru1I | TTAA | 2 cut(s) | 1478, 1482 |
| Tru9I | TTAA | 2 cut(s) | 1478, 1482 |
| TseFI | GTSAC | 2 cut(s) | 4, 707 |
| TseI | GCWGC | 4 cut(s) | 221, 890, 986, 1424 |
| Tsp45I | GTSAC | 2 cut(s) | 4, 707 |
| TspDTI | ATGAA | 9 cut(s) | 444, 595, 818, 830, 846, 858, 1244, 1385, 1473 |
| TspGWI | ACGGA | 1 cut(s) | 1305 |
| Tth111I | GACNNNGTC | 2 cut(s) | 200, 758 |
| VpaK11BI | GGWCC | 1 cut(s) | 1355 |
| XapI | RAATTY | 1 cut(s) | 466 |
| XceI | RCATGY | 2 cut(s) | 282, 694 |
| XmnI | GAANNNNTTC | 1 cut(s) | 837 |
| XspI | CTAG | 1 cut(s) | 747 |
| Zsp2I | ATGCAT | 1 cut(s) | 682 |