FvH4_7g31860

Belongs to the spermidine spermine synthase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
22974125 .. 22976274
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31860.t1

Sequence Viewer

Length: 459 bp
ATGATCTCTGTTTGCCAGCTAACATTCAAGGGGTCATTTAACTATACATGGGCGAGTGTTCCTACATATCCAAGCGGTGTTATAGGTTTCCTGCTATGTTCAACAGAAGGGCCTCCTGTTGATTTTAAAAATCCAGTCAATTCCATTGAAAAGTTGGAAGGAGCTGTTAACCATAAAAGAGAACTTCGGTTCTATAACTCTGAGATGCACTCAGCTGCCTTTGCCTTGCCTGCTTGTTTGAGGAGGGAGGTGAGCACACTCCGTGATTCTTCAAATCCAGCCAGACGAAACGGCTCCTCCTTTTGCGGCATCGGGTATAGCCGCTGGTACCCAAGTTTTAGGGAGTTTTCACCCCCCTTGTCAATAGTCAGTCGAGGACAGGAGTTCGTTTTTATATGCTTCTTTGGTCGATTGCGGCGACGGGCTCTCAGGGAAGAAAGAGCCAGCTCCTCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.18

Weight (kDa)

9.66

Isoelectric Point (pI)

74.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018087)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 327
AciI CCGC 4 cut(s) 75, 306, 322, 415
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 1 cut(s) 329
AgsI TTSAA 4 cut(s) 28, 102, 149, 273
AluBI AGCT 5 cut(s) 19, 164, 215, 447, 456
AluI AGCT 5 cut(s) 19, 164, 215, 447, 456
Alw21I GWGCWC 1 cut(s) 257
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 262, 342
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BanI GGYRCC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 307
BisI GCNGC 4 cut(s) 216, 307, 322, 416
BlsI GCNGC 4 cut(s) 217, 308, 323, 417
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 295, 329
BmsI GCATC 2 cut(s) 195, 318
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bse1I ACTGG 1 cut(s) 134
BseMII CTCAG 3 cut(s) 192, 225, 442
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 3 cut(s) 256, 286, 439
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 257
BsnI GGCC 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 257, 427
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 4 cut(s) 75, 306, 322, 415
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 3 cut(s) 193, 224, 441
BspLI GGNNCC 2 cut(s) 295, 329
BspT107I GGYRCC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 134
BssMI GATC 1 cut(s) 3
BstC8I GCNNGC 3 cut(s) 17, 231, 445
BstDEI CTNAG 3 cut(s) 201, 211, 428
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 221, 230, 453
BstV1I GCAGC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 17, 231, 445
Cfr13I GGNCC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 48
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 201, 211, 428
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 127
DraIII CACNNNGTG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 1 cut(s) 51
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 4 cut(s) 216, 307, 322, 416
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 4 cut(s) 216, 307, 322, 416
GluI GCNGC 4 cut(s) 216, 307, 322, 416
GsuI CTGGAG 1 cut(s) 436
HaeIII GGCC 1 cut(s) 112
Hin1II CATG 1 cut(s) 51
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 266
HpaI GTTAAC 1 cut(s) 169
HphI GGTGA 2 cut(s) 262, 342
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 423
HpyAV CCTTC 2 cut(s) 101, 152
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 230, 453
HpyF3I CTNAG 3 cut(s) 201, 211, 428
Hsp92II CATG 1 cut(s) 51
KpnI GGTACC 1 cut(s) 331
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 3 cut(s) 161, 299, 452
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 195, 318
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 261, 446
MhlI GDGCHC 2 cut(s) 257, 427
MluCI AATT 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 6 cut(s) 123, 234, 237, 241, 307, 368
MseI TTAA 3 cut(s) 39, 126, 168
MspA1I CMGCKG 3 cut(s) 215, 324, 456
MwoI GCNNNNNNNGC 3 cut(s) 221, 230, 453
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 2 cut(s) 295, 329
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 4 cut(s) 217, 308, 323, 417
PspN4I GGNNCC 2 cut(s) 295, 329
PspPI GGNCC 1 cut(s) 110
PvuII CAGCTG 2 cut(s) 215, 456
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 3 cut(s) 39, 126, 168
SatI GCNGC 4 cut(s) 216, 307, 322, 416
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 110
SduI GDGCHC 2 cut(s) 257, 427
SetI ASST 7 cut(s) 21, 88, 166, 217, 252, 449, 458
SfaNI GCATC 2 cut(s) 195, 318
Sse9I AATT 1 cut(s) 139
SsiI CCGC 4 cut(s) 75, 306, 322, 415
TaqI TCGA 2 cut(s) 373, 409
TasI AATT 1 cut(s) 139
TauI GCSGC 3 cut(s) 309, 324, 418
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 3 cut(s) 39, 126, 168
Tru9I TTAA 3 cut(s) 39, 126, 168
TseI GCWGC 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.