Rorug01G0427500

Belongs to the spermidine spermine synthase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
52715315 .. 52718223
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0427500.1

Sequence Viewer

Length: 678 bp
ATGGTGGAAGGGATTAGAGACTTCACTGCTATAGTCGAGAGAGATGGTGTTCACCAACCTGTTCTGGATGCGCAGAATGGCGAGGAGCTGATGCATGTTCAGCCTGGTGTTTCTATTGTCCTCGGTAGTCACCCTCCTGAGTCCCCTGGCACTCTCTATATCTCCACCAAGCAAGTGATTTGGTTGAGTGACACTAACAGGGCCAAAGGTTATGCGGTGGACTTCCTGTCTATATCACTGCATGCTGTATCCAGGGACCCAGAGGCGTACACCTCTCCTTGCATATACGCTCAGATTGAAACTGGAGCTGATGAAGATGAGTCAGAGGGCTCAGATTCAGAATGCAATGGTGTTTTAGATCTGTCCAAGATTACAGAAATGAGGCTTGTTCCTTCCGATCCTAACCAATTGGATTCTTTGTTTGATGTATTTTGTGAGTGCGCTGAGCTGAATCCTGAACCAACTGAAGAAAATGAAGAAGAAGAGCATAATTGGATATTTAGTGCTGACCAGTTGGAAGATGAGGCAACAGGAGAAGATTCTGAGCCTTCAATTGCAATTGGGCAATCTAATGGGGATCATGACCTAGCTCGTACTGTGCTTGAGCTTCAGATCAATGATCAACGCTTTGAGGATGCAGAAGAGATGGAGCATGAGACTGACAGTGCACAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

225

Amino Acids

24.92

Weight (kDa)

4.05

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Voldacs PF03517 50 - 176 1.4e-27 Regulator of volume decrease after cellular swelling
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 72
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 392, 585
AcuI CTGAAG 2 cut(s) 486, 593
AfaI GTAC 2 cut(s) 269, 595
AfeI AGCGCT 1 cut(s) 674
AgsI TTSAA 2 cut(s) 299, 552
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 103, 145, 251
AluBI AGCT 5 cut(s) 88, 308, 448, 590, 607
AluI AGCT 5 cut(s) 88, 308, 448, 590, 607
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 12, 650
Alw44I GTGCAC 1 cut(s) 666
AlwI GGATC 2 cut(s) 392, 585
Aor51HI AGCGCT 1 cut(s) 674
AoxI GGCC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 666
AspLEI GCGC 3 cut(s) 73, 443, 675
AspS9I GGNCC 2 cut(s) 201, 256
AsuHPI GGTGA 2 cut(s) 44, 122
AvaII GGWCC 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 670
BccI CCATC 2 cut(s) 38, 640
BciT130I CCWGG 3 cut(s) 105, 147, 253
BciVI GTATCC 1 cut(s) 259
BclI TGATCA 1 cut(s) 619
BcoDI GTCTC 2 cut(s) 12, 650
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 676
BfuI GTATCC 1 cut(s) 259
BglII AGATCT 1 cut(s) 358
BlpI GCTNAGC 1 cut(s) 444
Bme1390I CCNGG 3 cut(s) 105, 147, 253
Bme18I GGWCC 1 cut(s) 256
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 201, 256
BmiI GGNNCC 2 cut(s) 257, 258
BmrFI CCNGG 3 cut(s) 105, 147, 253
BmsI GCATC 3 cut(s) 58, 81, 625
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 623
BsaJI CCNNGG 3 cut(s) 121, 145, 252
Bse1I ACTGG 2 cut(s) 307, 511
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 3 cut(s) 105, 147, 253
BseDI CCNNGG 3 cut(s) 121, 145, 252
BseGI GGATG 2 cut(s) 73, 640
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 5 cut(s) 129, 305, 345, 435, 534
BseNI ACTGG 2 cut(s) 307, 511
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 670
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 670
BslFI GGGAC 2 cut(s) 127, 269
BsmAI GTCTC 2 cut(s) 12, 650
BsmFI GGGAC 2 cut(s) 127, 269
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 332, 670
Bsp143I GATC 5 cut(s) 358, 397, 577, 612, 619
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 5 cut(s) 130, 304, 344, 436, 535
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 2 cut(s) 257, 258
BspPI GGATC 2 cut(s) 392, 585
BspQI GCTCTTC 1 cut(s) 477
BsrDI GCAATG 1 cut(s) 352
BsrI ACTGG 2 cut(s) 307, 511
BssECI CCNNGG 3 cut(s) 121, 145, 252
BssMI GATC 5 cut(s) 358, 397, 577, 612, 619
Bst2UI CCWGG 3 cut(s) 105, 147, 253
Bst4CI ACNGT 2 cut(s) 598, 665
Bst6I CTCTTC 2 cut(s) 477, 636
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 5 cut(s) 138, 291, 331, 444, 543
BstF5I GGATG 2 cut(s) 73, 640
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 3 cut(s) 73, 443, 675
BstKTI GATC 5 cut(s) 361, 400, 580, 615, 622
BstMAI GTCTC 2 cut(s) 12, 650
BstMBI GATC 5 cut(s) 358, 397, 577, 612, 619
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 3 cut(s) 105, 147, 253
BstNSI RCATGY 2 cut(s) 98, 245
BstSCI CCNGG 3 cut(s) 103, 145, 251
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 670
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 73, 640
BtsI GCAGTG 2 cut(s) 24, 236
BtsIMutI CAGTG 3 cut(s) 24, 236, 670
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 580
CfoI GCGC 3 cut(s) 73, 443, 675
Cfr13I GGNCC 2 cut(s) 201, 256
Csp6I GTAC 2 cut(s) 268, 594
CviAII CATG 4 cut(s) 95, 242, 581, 653
CviQI GTAC 2 cut(s) 268, 594
DdeI CTNAG 5 cut(s) 138, 291, 331, 444, 543
DpnI GATC 5 cut(s) 360, 399, 579, 614, 621
DpnII GATC 5 cut(s) 358, 397, 577, 612, 619
DriI GACNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 477, 636
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 2 cut(s) 477, 636
Eco24I GRGCYC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 256
Eco47III AGCGCT 1 cut(s) 674
Eco57I CTGAAG 2 cut(s) 486, 593
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 3 cut(s) 103, 145, 251
EcoT22I ATGCAT 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 332
FaeI CATG 4 cut(s) 98, 245, 584, 656
FaqI GGGAC 2 cut(s) 127, 269
FatI CATG 4 cut(s) 94, 241, 580, 652
FbaI TGATCA 1 cut(s) 619
FokI GGATG 2 cut(s) 80, 647
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 1 cut(s) 587
FspI TGCGCA 1 cut(s) 72
GlaI GCGC 3 cut(s) 72, 442, 674
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 3 cut(s) 73, 443, 675
Hin1II CATG 4 cut(s) 98, 245, 584, 656
Hin6I GCGC 3 cut(s) 71, 441, 673
HinP1I GCGC 3 cut(s) 71, 441, 673
HinfI GANTC 6 cut(s) 140, 320, 335, 413, 451, 539
HphI GGTGA 2 cut(s) 44, 122
Hpy166II GTNNAC 4 cut(s) 52, 220, 270, 668
Hpy188I TCNGA 7 cut(s) 294, 325, 334, 340, 397, 544, 612
Hpy188III TCNNGA 5 cut(s) 37, 65, 137, 455, 581
Hpy8I GTNNAC 4 cut(s) 52, 220, 270, 668
HpyAV CCTTC 2 cut(s) 402, 558
HpyCH4III ACNGT 2 cut(s) 598, 665
HpyCH4V TGCA 7 cut(s) 94, 241, 282, 345, 557, 638, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 5 cut(s) 138, 291, 331, 444, 543
Hsp92II CATG 4 cut(s) 98, 245, 584, 656
HspAI GCGC 3 cut(s) 71, 441, 673
KflI GGGWCCC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 5 cut(s) 358, 397, 577, 612, 619
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 85, 305, 649
LweI GCATC 3 cut(s) 58, 81, 625
MaeI CTAG 1 cut(s) 587
MaeIII GTNAC 2 cut(s) 128, 188
MalI GATC 5 cut(s) 360, 399, 579, 614, 621
MboI GATC 5 cut(s) 358, 397, 577, 612, 619
MboII GAAGA 8 cut(s) 326, 479, 488, 491, 494, 530, 548, 653
MfeI CAATTG 3 cut(s) 407, 552, 558
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 332, 670
MluCI AATT 4 cut(s) 407, 490, 552, 558
MlyI GAGTC 2 cut(s) 149, 329
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 9 cut(s) 76, 131, 144, 256, 283, 319, 375, 517, 625
Mph1103I ATGCAT 1 cut(s) 96
MspR9I CCNGG 3 cut(s) 105, 147, 253
MunI CAATTG 3 cut(s) 407, 552, 558
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 3 cut(s) 105, 147, 253
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 5 cut(s) 358, 397, 577, 612, 619
NlaIII CATG 4 cut(s) 98, 245, 584, 656
NlaIV GGNNCC 2 cut(s) 257, 258
NmuCI GTSAC 2 cut(s) 128, 188
NsbI TGCGCA 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 2 cut(s) 98, 245
PaeI GCATGC 1 cut(s) 245
PagI TCATGA 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 477
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 4 cut(s) 335, 413, 451, 539
PleI GAGTC 2 cut(s) 148, 328
PpsI GAGTC 2 cut(s) 148, 328
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 103, 145, 251
PspGI CCWGG 3 cut(s) 103, 145, 251
PspN4I GGNNCC 2 cut(s) 257, 258
PspPI GGNCC 2 cut(s) 201, 256
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 269, 595
RsaNI GTAC 2 cut(s) 268, 594
SapI GCTCTTC 1 cut(s) 477
Sau3AI GATC 5 cut(s) 358, 397, 577, 612, 619
Sau96I GGNCC 2 cut(s) 201, 256
SchI GAGTC 2 cut(s) 149, 329
ScrFI CCNGG 3 cut(s) 105, 147, 253
SduI GDGCHC 2 cut(s) 332, 670
SetI ASST 9 cut(s) 61, 90, 211, 275, 310, 450, 588, 592, 609
SfaNI GCATC 3 cut(s) 58, 81, 625
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SphI GCATGC 1 cut(s) 245
Sse9I AATT 4 cut(s) 407, 490, 552, 558
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 103, 145, 251
TaaI ACNGT 2 cut(s) 598, 665
TaqI TCGA 1 cut(s) 36
TasI AATT 4 cut(s) 407, 490, 552, 558
TfiI GAWTC 4 cut(s) 335, 413, 451, 539
TscAI CASTG 3 cut(s) 31, 243, 670
TseFI GTSAC 2 cut(s) 128, 188
Tsp45I GTSAC 2 cut(s) 128, 188
TspDTI ATGAA 2 cut(s) 327, 489
TspRI CASTG 3 cut(s) 31, 243, 670
VneI GTGCAC 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 256
XceI RCATGY 2 cut(s) 98, 245
XspI CTAG 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.