Rmu_sc0002688.1_g000003

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002688.1
OG0000119
Physical Location & Seq
Reverse (-)
7383 .. 8635
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002688.1_g000003.1.cds

Sequence Viewer

Length: 576 bp
atgctcttcaacgcagaaggcattatatggacttacacaacaagtactgatggttcaataaaattgggttcctcaatcacagagtgtcttggtaaaggtgatttctatggagaagaacttttgagttgggcttcctcatacatgtccttcttcgacctccctatctcgacccaaaatgtaaaatgccatacaaaagttgaagccttttctctcatggcaaaggacttgaaggctgtggtctccaaattctggtggcatttcagcaaggcggttcccgatttgaacagaaacaattctcagctggaggaattggctctttcttccctaagagcccgtcgccgtaatcgatcaaagaagcatataaaggctcctcaattgtctacttactcccatgaacttgggtacctgcggctataccctgcgcagggtaaccccaaaggcgaggatccgacttcaaacccggttgaggtggtggagggctcggagaatccgaatacgaaaccgaaggaggtcggcgtggcggatgttgaatgcgggttggagatcagaggaagaggtcaaggttgtcgccgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

191

Amino Acids

21.35

Weight (kDa)

8.63

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 1 cut(s) 380
AciI CCGC 4 cut(s) 269, 409, 521, 534
AclWI GGATC 2 cut(s) 440, 453
AcsI RAATTY 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 2 cut(s) 46, 404
AfiI CCNNNNNNNGG 4 cut(s) 249, 424, 425, 466
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 7 cut(s) 10, 57, 200, 229, 283, 456, 530
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 2 cut(s) 440, 453
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 292
Asp718I GGTACC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 110
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BamHI GGATCC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 2 cut(s) 334, 482
BccI CCATC 1 cut(s) 44
BceAI ACGGC 2 cut(s) 324, 555
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 244
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 1 cut(s) 410
BlsI GCNGC 1 cut(s) 411
BmcAI AGTACT 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 461
BmiI GGNNCC 5 cut(s) 70, 273, 369, 404, 447
BmrFI CCNGG 1 cut(s) 461
BpmI CTGGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 244
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 424, 425, 466
BseCI ATCGAT 1 cut(s) 346
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 4 cut(s) 249, 424, 425, 466
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 402
BshVI ATCGAT 1 cut(s) 346
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 4 cut(s) 249, 424, 425, 466
BsmAI GTCTC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 536
Bso31I GGTCTC 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 334, 482
Bsp143I GATC 3 cut(s) 347, 445, 543
BspACI CCGC 4 cut(s) 269, 409, 521, 534
BspCNI CTCAG 1 cut(s) 310
BspDI ATCGAT 1 cut(s) 346
BspLI GGNNCC 5 cut(s) 70, 273, 369, 404, 447
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 2 cut(s) 440, 453
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 402
BspTNI GGTCTC 1 cut(s) 244
BssMI GATC 3 cut(s) 347, 445, 543
Bst6I CTCTTC 2 cut(s) 11, 547
BstDEI CTNAG 2 cut(s) 297, 326
BstEII GGTNACC 1 cut(s) 428
BstF5I GGATG 1 cut(s) 529
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 3 cut(s) 350, 448, 546
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 3 cut(s) 347, 445, 543
BstNSI RCATGY 1 cut(s) 145
BstPI GGTNACC 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 346
BsuTUI ATCGAT 1 cut(s) 346
BtsCI GGATG 1 cut(s) 529
BveI ACCTGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 424
ClaI ATCGAT 1 cut(s) 346
Csp6I GTAC 2 cut(s) 45, 403
CviAII CATG 3 cut(s) 142, 214, 392
CviJI RGCY 9 cut(s) 131, 203, 233, 301, 314, 332, 368, 412, 480
CviKI_1 RGCY 9 cut(s) 131, 203, 233, 301, 314, 332, 368, 412, 480
CviQI GTAC 2 cut(s) 45, 403
DdeI CTNAG 2 cut(s) 297, 326
DpnI GATC 3 cut(s) 349, 447, 545
DpnII GATC 3 cut(s) 347, 445, 543
DraIII CACNNNGTG 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 11, 547
EarI CTCTTC 2 cut(s) 11, 547
EciI GGCGGA 1 cut(s) 536
Eco24I GRGCYC 2 cut(s) 334, 482
Eco31I GGTCTC 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 428
EcoO65I GGTNACC 1 cut(s) 428
EcoT38I GRGCYC 2 cut(s) 334, 482
FaeI CATG 3 cut(s) 145, 217, 395
FatI CATG 3 cut(s) 141, 213, 391
FauI CCCGC 1 cut(s) 527
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 1 cut(s) 410
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 2 cut(s) 334, 482
Fsp4HI GCNGC 1 cut(s) 410
FspI TGCGCA 1 cut(s) 423
GlaI GCGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 410
GsuI CTGGAG 1 cut(s) 323
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 424
Hin1II CATG 3 cut(s) 145, 217, 395
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 1 cut(s) 487
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 4 cut(s) 450, 484, 492, 548
Hpy188III TCNNGA 2 cut(s) 166, 275
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 4 cut(s) 11, 157, 223, 499
HpyF3I CTNAG 2 cut(s) 297, 326
Hsp92II CATG 3 cut(s) 145, 217, 395
HspAI GCGC 1 cut(s) 422
KpnI GGTACC 1 cut(s) 406
Kzo9I GATC 3 cut(s) 347, 445, 543
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 6 cut(s) 235, 287, 410, 419, 432, 474
MaeIII GTNAC 1 cut(s) 428
MalI GATC 3 cut(s) 349, 447, 545
MboI GATC 3 cut(s) 347, 445, 543
MboII GAAGA 4 cut(s) 125, 142, 312, 564
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 1 cut(s) 445
MhlI GDGCHC 2 cut(s) 334, 482
MluCI AATT 5 cut(s) 62, 245, 292, 308, 374
MmeI TCCRAC 2 cut(s) 473, 519
MroXI GAANNNNTTC 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 1 cut(s) 374
Mva1269I GAATGC 1 cut(s) 536
NciI CCSGG 1 cut(s) 461
NdeII GATC 3 cut(s) 347, 445, 543
NlaIII CATG 3 cut(s) 145, 217, 395
NlaIV GGNNCC 5 cut(s) 70, 273, 369, 404, 447
NsbI TGCGCA 1 cut(s) 423
NspI RCATGY 1 cut(s) 145
PciI ACATGT 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 343, 488
PctI GAATGC 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 487
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 1 cut(s) 411
PscI ACATGT 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 428
PspN4I GGNNCC 5 cut(s) 70, 273, 369, 404, 447
PsrI GAACNNNNNNTAC 2 cut(s) 37, 69
PsuI RGATCY 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 2 cut(s) 46, 404
RsaNI GTAC 2 cut(s) 45, 403
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 1 cut(s) 410
Sau3AI GATC 3 cut(s) 347, 445, 543
ScaI AGTACT 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 334, 482
SetI ASST 8 cut(s) 100, 159, 303, 408, 471, 513, 559, 565
Sse9I AATT 5 cut(s) 62, 245, 292, 308, 374
SsiI CCGC 4 cut(s) 269, 409, 521, 534
StyD4I CCNGG 1 cut(s) 459
TaqI TCGA 3 cut(s) 153, 167, 346
TasI AATT 5 cut(s) 62, 245, 292, 308, 374
TatI WGTACW 1 cut(s) 44
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 1 cut(s) 487
TspDTI ATGAA 1 cut(s) 408
Van91I CCANNNNNTGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.