Rmu_sc0002688.1_g000020

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002688.1
OG0000119
Physical Location & Seq
Reverse (-)
82516 .. 83793
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002688.1_g000020.1.cds

Sequence Viewer

Length: 975 bp
atgtctaataacacggcatcaaccaactttccacaaaagttgtgttactctttctggtggggtctacgaaatttgagtaattttggcacgaatcttgtaacaagtaactatgtatgggagaatttattcgcaattcttatttctatcattggcttgttactgtttttgtacctcatcggaaatgtgcagacatttatgtctatgggaactgcaaagtcagaggagataagaaggaagatcaaatcaaaagagcaagatatgaaagtgtggatggagaaaaattgcctccctgctaagttgaggaaagaaatcatggcaaatataagagaaaaattagaacaagacaagcatgctgacatgggggatctgtactccattcttccctcgtcaaccaaaaaatctctaaagcgtgctctctgcatgagtacactgagaaaagtaccaatgcttgaaggtatgaatccaaaagttttgaaaatgatatgtgactatctgaagcctgtgatataccctgagcatagctatgttgccaaggtggatgaaccagttgatcggatggtgcttgtcaccgaaggaactatgtggatctactcgtcgaatactagtactccatctaagatccacaggacggttgagaacggtgacatttatggagatgaacaacttctgagttgggtgtcggaggacatgcaaagcgtctcgtttgaaaccgtcccgatctcaaaagaaaatgtgaaatgtcatacaagagtggaagggtttgctatcacggccaaggacttgaaagcagtcgccaccaagtgcaaaatgtattggaattacgttgatcctcgagagaaggagacggtggcgagctctaccataggaacggcattccgtcgaaaccgcaataacccaaataggccggctaccgtaggagtaggagctgcgacctcgccaagaacacgaattgagtatctgcagaagagaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

324

Amino Acids

37.04

Weight (kDa)

9.38

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 64
AciI CCGC 1 cut(s) 886
AclWI GGATC 4 cut(s) 372, 593, 613, 821
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 2 cut(s) 70, 121
AcuI CTGAAG 1 cut(s) 515
AdeI CACNNNGTG 1 cut(s) 801
AfaI GTAC 5 cut(s) 170, 371, 427, 441, 607
AfiI CCNNNNNNNGG 1 cut(s) 628
AgsI TTSAA 4 cut(s) 452, 475, 707, 784
AhlI ACTAGT 1 cut(s) 602
AluBI AGCT 3 cut(s) 522, 855, 926
AluI AGCT 3 cut(s) 522, 855, 926
Alw21I GWGCWC 2 cut(s) 415, 857
Alw26I GTCTC 2 cut(s) 703, 836
AlwI GGATC 4 cut(s) 372, 593, 613, 821
Ama87I CYCGRG 1 cut(s) 831
AoxI GGCC 2 cut(s) 771, 902
ApeKI GCWGC 1 cut(s) 926
ApoI RAATTY 2 cut(s) 70, 121
Asp700I GAANNNNTTC 2 cut(s) 125, 663
AsuHPI GGTGA 2 cut(s) 559, 653
AvaI CYCGRG 1 cut(s) 831
BanII GRGCYC 1 cut(s) 857
Bbv12I GWGCWC 2 cut(s) 415, 857
BbvI GCAGC 1 cut(s) 913
BccI CCATC 3 cut(s) 265, 550, 619
BceAI ACGGC 3 cut(s) 30, 786, 885
BcoDI GTCTC 2 cut(s) 703, 836
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 959
BisI GCNGC 1 cut(s) 927
BlsI GCNGC 1 cut(s) 928
BmcAI AGTACT 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 831
BmsI GCATC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 531, 774
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse118I RCCGGY 1 cut(s) 904
Bse1I ACTGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 531, 774
BseGI GGATG 3 cut(s) 276, 544, 561
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMII CTCAG 3 cut(s) 422, 504, 659
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 913
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 2 cut(s) 773, 904
BsiHKAI GWGCWC 2 cut(s) 415, 857
BsiHKCI CYCGRG 1 cut(s) 831
BsiSI CCGG 1 cut(s) 905
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 628
BsmAI GTCTC 2 cut(s) 703, 836
BsmBI CGTCTC 2 cut(s) 703, 836
BsmFI GGGAC 1 cut(s) 698
BsmI GAATGC 1 cut(s) 872
BsnI GGCC 2 cut(s) 773, 904
BsoBI CYCGRG 1 cut(s) 831
Bsp1286I GDGCHC 2 cut(s) 415, 857
Bsp143I GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
BspACI CCGC 1 cut(s) 886
BspANI GGCC 2 cut(s) 773, 904
BspCNI CTCAG 3 cut(s) 423, 505, 660
BspMAI CTGCAG 1 cut(s) 963
BspPI GGATC 4 cut(s) 372, 593, 613, 821
BsrFI RCCGGY 1 cut(s) 904
BsrI ACTGG 1 cut(s) 545
BssAI RCCGGY 1 cut(s) 904
BssECI CCNNGG 2 cut(s) 531, 774
BssMI GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
BssT1I CCWWGG 2 cut(s) 531, 774
Bst4CI ACNGT 6 cut(s) 162, 631, 641, 712, 847, 913
Bst6I CTCTTC 1 cut(s) 959
BstC8I GCNNGC 4 cut(s) 351, 411, 853, 906
BstDEI CTNAG 5 cut(s) 294, 431, 513, 615, 668
BstF5I GGATG 3 cut(s) 276, 544, 561
BstKTI GATC 7 cut(s) 240, 367, 553, 588, 621, 720, 829
BstMAI GTCTC 2 cut(s) 703, 836
BstMBI GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNSI RCATGY 2 cut(s) 353, 691
BstSFI CTRYAG 1 cut(s) 959
BstV1I GCAGC 1 cut(s) 913
BstX2I RGATCY 3 cut(s) 364, 585, 618
BstYI RGATCY 3 cut(s) 364, 585, 618
BsuRI GGCC 2 cut(s) 773, 904
BtsCI GGATG 3 cut(s) 276, 544, 561
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 4 cut(s) 351, 411, 853, 906
Cfr10I RCCGGY 1 cut(s) 904
CseI GACGC 1 cut(s) 685
Csp6I GTAC 5 cut(s) 169, 370, 426, 440, 606
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 5 cut(s) 313, 350, 358, 421, 688
CviJI RGCY 8 cut(s) 153, 499, 522, 773, 855, 904, 908, 926
CviKI_1 RGCY 8 cut(s) 153, 499, 522, 773, 855, 904, 908, 926
CviQI GTAC 5 cut(s) 169, 370, 426, 440, 606
DdeI CTNAG 5 cut(s) 294, 431, 513, 615, 668
DpnI GATC 7 cut(s) 239, 366, 552, 587, 620, 719, 828
DpnII GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
DraIII CACNNNGTG 1 cut(s) 801
DrdI GACNNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 1 cut(s) 959
EarI CTCTTC 1 cut(s) 959
Ecl136II GAGCTC 1 cut(s) 855
Eco130I CCWWGG 2 cut(s) 531, 774
Eco24I GRGCYC 1 cut(s) 857
Eco53kI GAGCTC 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 831
EcoICRI GAGCTC 1 cut(s) 855
EcoT14I CCWWGG 2 cut(s) 531, 774
EcoT38I GRGCYC 1 cut(s) 857
ErhI CCWWGG 2 cut(s) 531, 774
Esp3I CGTCTC 2 cut(s) 703, 836
FaeI CATG 5 cut(s) 316, 353, 361, 424, 691
FaqI GGGAC 1 cut(s) 698
FatI CATG 5 cut(s) 312, 349, 357, 420, 687
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 927
FokI GGATG 3 cut(s) 283, 551, 568
FriOI GRGCYC 1 cut(s) 857
Fsp4HI GCNGC 1 cut(s) 927
FspBI CTAG 1 cut(s) 603
GluI GCNGC 1 cut(s) 927
HaeIII GGCC 2 cut(s) 773, 904
HapII CCGG 1 cut(s) 905
HgaI GACGC 1 cut(s) 685
Hin1II CATG 5 cut(s) 316, 353, 361, 424, 691
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 2 cut(s) 91, 460
HpaII CCGG 1 cut(s) 905
HphI GGTGA 2 cut(s) 559, 653
Hpy166II GTNNAC 3 cut(s) 65, 390, 428
Hpy188I TCNGA 6 cut(s) 179, 220, 495, 555, 669, 682
Hpy188III TCNNGA 2 cut(s) 715, 833
Hpy8I GTNNAC 3 cut(s) 65, 390, 428
Hpy99I CGWCG 2 cut(s) 598, 882
HpyAV CCTTC 5 cut(s) 225, 446, 566, 749, 832
HpyCH4III ACNGT 6 cut(s) 162, 631, 641, 712, 847, 913
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 6 cut(s) 187, 212, 420, 691, 804, 961
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 5 cut(s) 294, 431, 513, 615, 668
HpySE526I ACGT 1 cut(s) 822
Hsp92II CATG 5 cut(s) 316, 353, 361, 424, 691
KroI GCCGGC 1 cut(s) 904
KroNI GCCGGC 1 cut(s) 906
Kzo9I GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
LmnI GCTCC 1 cut(s) 923
LpnPI CCDG 7 cut(s) 40, 303, 513, 525, 558, 610, 918
Lsp1109I GCAGC 1 cut(s) 913
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 822
MaeIII GTNAC 7 cut(s) 44, 97, 104, 156, 485, 565, 641
MalI GATC 7 cut(s) 239, 366, 552, 587, 620, 719, 828
MboI GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
MboII GAAGA 2 cut(s) 247, 371
MflI RGATCY 3 cut(s) 364, 585, 618
MhlI GDGCHC 2 cut(s) 415, 857
MluCI AATT 8 cut(s) 70, 79, 121, 132, 280, 332, 817, 948
MmeI TCCRAC 1 cut(s) 660
MnlI CCTC 8 cut(s) 182, 214, 294, 296, 394, 676, 840, 943
MroNI GCCGGC 1 cut(s) 904
MroXI GAANNNNTTC 2 cut(s) 125, 663
MslI CAYNNNNRTG 1 cut(s) 522
MspI CCGG 1 cut(s) 905
Mva1269I GAATGC 1 cut(s) 872
MwoI GCNNNNNNNGC 1 cut(s) 770
NaeI GCCGGC 1 cut(s) 906
NdeII GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
NgoMIV GCCGGC 1 cut(s) 904
NlaIII CATG 5 cut(s) 316, 353, 361, 424, 691
NmuCI GTSAC 3 cut(s) 485, 565, 641
NspI RCATGY 2 cut(s) 353, 691
PaeI GCATGC 1 cut(s) 353
PaeR7I CTCGAG 1 cut(s) 831
PctI GAATGC 1 cut(s) 872
PdiI GCCGGC 1 cut(s) 906
PdmI GAANNNNTTC 2 cut(s) 125, 663
PfeI GAWTC 2 cut(s) 91, 460
PkrI GCNGC 1 cut(s) 928
Psp124BI GAGCTC 1 cut(s) 857
PstI CTGCAG 1 cut(s) 963
PsuI RGATCY 3 cut(s) 364, 585, 618
RsaI GTAC 5 cut(s) 170, 371, 427, 441, 607
RsaNI GTAC 5 cut(s) 169, 370, 426, 440, 606
RseI CAYNNNNRTG 1 cut(s) 522
SacI GAGCTC 1 cut(s) 857
SatI GCNGC 1 cut(s) 927
Sau3AI GATC 7 cut(s) 237, 364, 550, 585, 618, 717, 826
ScaI AGTACT 1 cut(s) 607
SduI GDGCHC 2 cut(s) 415, 857
SetI ASST 9 cut(s) 174, 457, 524, 537, 825, 857, 928, 935, 974
SfaNI GCATC 1 cut(s) 26
SfcI CTRYAG 1 cut(s) 959
Sfr274I CTCGAG 1 cut(s) 831
SlaI CTCGAG 1 cut(s) 831
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 831
SmoI CTYRAG 1 cut(s) 831
SpeI ACTAGT 1 cut(s) 602
SphI GCATGC 1 cut(s) 353
Sse9I AATT 8 cut(s) 70, 79, 121, 132, 280, 332, 817, 948
SsiI CCGC 1 cut(s) 886
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 1 cut(s) 857
StyI CCWWGG 2 cut(s) 531, 774
TaaI ACNGT 6 cut(s) 162, 631, 641, 712, 847, 913
TaiI ACGT 1 cut(s) 825
TaqI TCGA 3 cut(s) 596, 832, 880
TasI AATT 8 cut(s) 70, 79, 121, 132, 280, 332, 817, 948
TatI WGTACW 3 cut(s) 369, 425, 605
TfiI GAWTC 2 cut(s) 91, 460
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 3 cut(s) 485, 565, 641
TseI GCWGC 1 cut(s) 926
Tsp45I GTSAC 3 cut(s) 485, 565, 641
TspDTI ATGAA 4 cut(s) 275, 473, 555, 672
TspGWI ACGGA 1 cut(s) 866
TspRI CASTG 1 cut(s) 435
XapI RAATTY 2 cut(s) 70, 121
XceI RCATGY 2 cut(s) 353, 691
XhoI CTCGAG 1 cut(s) 831
XmiI GTMKAC 1 cut(s) 64
XmnI GAANNNNTTC 2 cut(s) 125, 663
XspI CTAG 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.