Rorug01G0427000

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000119
Physical Location & Seq
Forward (+)
52691997 .. 52693772
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0427000.1

Sequence Viewer

Length: 513 bp
ATGGCGCTATCCTATCATCTTCTTCCTCGGCTCCAATTCACCAAAACGGTGCGTTTCACTGCGAAGTCTCAGACCCCAACAGAGCCGTCGTCCGAGGGCAAAGAGGTCCCGCCGAAGAAACCCAGTTCCCAAGGGATGGGATTCGGGTCGTCGGCGACTTCTGCGAGCAATTCCAGTGTGAGTTCGAAGCAAAAGAAGGGGAGGGCTTCGATTATACGGCGGTCGCCGGTGGAAAAGCCGGTGCTTTTTAGCGAAGAAGATGAGGCTAAGGTGAAGGAGATGGGGAGTAATGAGGGTGCTTTTGTGGTAGCTTGGTTGGTGCTTGGAGGTGTGATTCTAGTTGAAGGTCTTGCTCTTGCTACTTCGGGCTTCCTTCCAGAAAAGTGGGATAAATTATTTGTGAAGTATTTATATCCATCTTTTACGCCAACAGTCCTCTTGTTCATTGCTGGAACAACTGCATTCGGAGTAATAAAGTACCTGCAGAATGAGGAACTCAAAGGTCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

170

Amino Acids

18.48

Weight (kDa)

9.6

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 136
AciI CCGC 2 cut(s) 110, 220
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 344
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 31, 283
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 106
BccI CCATC 3 cut(s) 130, 274, 424
BceAI ACGGC 2 cut(s) 70, 233
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 482
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 32, 108
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 26, 93, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 2 cut(s) 226, 238
Bse1I ACTGG 2 cut(s) 123, 174
Bse3DI GCAATG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 26, 93, 130
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 123, 174
Bsh1285I CGRYCG 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 227, 239
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 185
BspACI CCGC 2 cut(s) 110, 220
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 32, 108
BspMAI CTGCAG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 489
BspT104I TTCGAA 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 2 cut(s) 226, 238
BsrI ACTGG 2 cut(s) 123, 174
BssAI RCCGGY 2 cut(s) 226, 238
BssECI CCNNGG 3 cut(s) 26, 93, 130
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 49, 433
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 69, 267
BstF5I GGATG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 72
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 181
BveI ACCTGC 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 226, 238
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 478
CviJI RGCY 7 cut(s) 31, 85, 206, 238, 266, 311, 369
CviKI_1 RGCY 7 cut(s) 31, 85, 206, 238, 266, 311, 369
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 2 cut(s) 69, 267
Eco130I CCWWGG 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaiI YATR 2 cut(s) 215, 412
FaqI GGGAC 1 cut(s) 92
FauI CCCGC 1 cut(s) 117
FokI GGATG 1 cut(s) 148
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 227, 239
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 2 cut(s) 141, 334
HpaII CCGG 2 cut(s) 227, 239
HphI GGTGA 2 cut(s) 31, 283
Hpy188I TCNGA 4 cut(s) 72, 94, 467, 507
Hpy188III TCNNGA 1 cut(s) 377
Hpy99I CGWCG 2 cut(s) 91, 154
HpyAV CCTTC 4 cut(s) 190, 268, 338, 383
HpyCH4III ACNGT 2 cut(s) 49, 433
HpyCH4V TGCA 2 cut(s) 461, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 69, 267
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 7 cut(s) 136, 187, 240, 252, 390, 435, 494
MaeI CTAG 1 cut(s) 338
MboII GAAGA 5 cut(s) 11, 14, 127, 266, 269
MluCI AATT 3 cut(s) 35, 169, 392
MnlI CCTC 9 cut(s) 36, 88, 97, 195, 256, 286, 320, 446, 484
MspI CCGG 2 cut(s) 227, 239
Mva1269I GAATGC 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 32, 108
NmeAIII GCCGAG 1 cut(s) 7
NspV TTCGAA 1 cut(s) 185
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 141, 334
PflMI CCANNNNNTGG 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 32, 108
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 1 cut(s) 486
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
Sau96I GGNCC 1 cut(s) 106
SetI ASST 7 cut(s) 108, 273, 313, 331, 349, 483, 505
SfcI CTRYAG 1 cut(s) 482
SfuI TTCGAA 1 cut(s) 185
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 1 cut(s) 106
Sse9I AATT 3 cut(s) 35, 169, 392
SsiI CCGC 2 cut(s) 110, 220
SspMI CTAG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 2 cut(s) 49, 433
TaqI TCGA 2 cut(s) 185, 209
TasI AATT 3 cut(s) 35, 169, 392
TfiI GAWTC 2 cut(s) 141, 334
TscAI CASTG 2 cut(s) 64, 181
TspDTI ATGAA 1 cut(s) 433
TspRI CASTG 2 cut(s) 64, 181
Van91I CCANNNNNTGG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 106
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.