pycom08g20940

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000119
Physical Location & Seq
Forward (+)
20532603 .. 20533539
937 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g20940.2

Sequence Viewer

Length: 567 bp
ATGGCTGCCCCCACAGTGGCGTTAGATATTGAGAACTGGACACGGGGAACCGAGAGCACTGCAGGTTCTCAAAATAACAGCATCGGGAGACAATTAACTAATTACATGAGAATAGATGAAGGACGTTCGCGTTCATCAACCGAGACGGGAAAAGGGGCAACCGTGAAGGAAATTCTTGATCCACGGGGACGCTTTGGCGTAATATGGTCTAAGATGTTTGTGATTTCATGTGCGATTGCAGTCTCGCTCGATCCTTTCTTCTTTTACATTCCGGTCGTTGTTGAGGAGAAGAAACGCATAAGGAAGGACACGAGTTTGATGACTGTAGCTCTCCTCTTACGTTCACTCACGGATATGACCTTCATAATACATATTTTACATGAAGTTCGTGTTACTAGTACCAACACTACTGCTGTGGCCATCTCCATCTTAGTTGACTTTCTCGCCATTCTTCCCATCCCACAGCTAAACCTAAACATTTTGGTAAGTAAAATGTTTGCCGAGAAAAACTTTATCCATTGGCTGTTTCTGCTATATGACGGTGAGTGGCTAAAACATGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.19

Weight (kDa)

8.76

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
AccII CGCG 1 cut(s) 130
AclWI GGATC 2 cut(s) 173, 245
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 16
AhlI ACTAGT 1 cut(s) 395
AluBI AGCT 2 cut(s) 329, 466
AluI AGCT 2 cut(s) 329, 466
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 3 cut(s) 82, 137, 247
AlwI GGATC 2 cut(s) 173, 245
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 554
BalI TGGCCA 1 cut(s) 419
BauI CACGAG 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 3 cut(s) 428, 434, 464
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BcoDI GTCTC 3 cut(s) 82, 137, 247
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 2 cut(s) 60, 324
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 49
BmsI GCATC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 299, 323
Bsh1236I CGCG 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 3 cut(s) 82, 137, 247
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 178, 250
BspANI GGCC 1 cut(s) 419
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 2 cut(s) 173, 245
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 2 cut(s) 178, 250
BssSI CACGAG 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 310
Bst4CI ACNGT 4 cut(s) 16, 163, 325, 542
BstDEI CTNAG 2 cut(s) 210, 430
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 456
BstFNI CGCG 1 cut(s) 130
BstKTI GATC 2 cut(s) 181, 253
BstMAI GTCTC 3 cut(s) 82, 137, 247
BstMBI GATC 2 cut(s) 178, 250
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNSI RCATGY 1 cut(s) 560
BstSFI CTRYAG 2 cut(s) 60, 324
BstUI CGCG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 419
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 1 cut(s) 456
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 21, 57
BveI ACCTGC 1 cut(s) 53
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 399
CviAII CATG 4 cut(s) 106, 228, 380, 557
CviJI RGCY 6 cut(s) 5, 329, 419, 466, 523, 550
CviKI_1 RGCY 6 cut(s) 5, 329, 419, 466, 523, 550
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 2 cut(s) 210, 430
DpnI GATC 2 cut(s) 180, 252
DpnII GATC 2 cut(s) 178, 250
EaeI YGGCCR 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 4 cut(s) 109, 231, 383, 560
FaqI GGGAC 1 cut(s) 201
FatI CATG 4 cut(s) 105, 227, 379, 556
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 419
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 198
Hin1II CATG 4 cut(s) 109, 231, 383, 560
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 344, 436
Hpy188III TCNNGA 2 cut(s) 85, 176
Hpy8I GTNNAC 2 cut(s) 344, 436
HpyAV CCTTC 4 cut(s) 113, 160, 298, 370
HpyCH4III ACNGT 4 cut(s) 16, 163, 325, 542
HpyCH4IV ACGT 2 cut(s) 124, 340
HpyCH4V TGCA 3 cut(s) 62, 239, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 2 cut(s) 210, 430
HpySE526I ACGT 2 cut(s) 124, 340
Hsp92II CATG 4 cut(s) 109, 231, 383, 560
Kzo9I GATC 2 cut(s) 178, 250
LpnPI CCDG 3 cut(s) 22, 48, 285
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 124, 340
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 180, 252
MboI GATC 2 cut(s) 178, 250
MboII GAAGA 3 cut(s) 250, 301, 443
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 3 cut(s) 92, 100, 171
MluNI TGGCCA 1 cut(s) 419
MnlI CCTC 2 cut(s) 277, 344
Mox20I TGGCCA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 419
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 419
MspI CCGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 529
NdeII GATC 2 cut(s) 178, 250
NlaIII CATG 4 cut(s) 109, 231, 383, 560
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 526
NspI RCATGY 1 cut(s) 560
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 64
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 178, 250
SduI GDGCHC 1 cut(s) 59
SetI ASST 7 cut(s) 67, 127, 331, 343, 362, 468, 474
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 2 cut(s) 60, 324
SmiMI CAYNNNNRTG 1 cut(s) 353
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 3 cut(s) 92, 100, 171
SspMI CTAG 1 cut(s) 396
TaaI ACNGT 4 cut(s) 16, 163, 325, 542
TaiI ACGT 2 cut(s) 127, 343
TaqI TCGA 1 cut(s) 249
TasI AATT 3 cut(s) 92, 100, 171
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 2 cut(s) 21, 64
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 123, 132, 216, 352, 396
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 2 cut(s) 21, 64
XapI RAATTY 1 cut(s) 171
XceI RCATGY 1 cut(s) 560
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.