MD07G1292900.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000119
Physical Location & Seq
Reverse (-)
35451426 .. 35460652
9227 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1292900.v1.1.491

Sequence Viewer

Length: 1932 bp
ATGGTTTACGGAAGAGCTTCAGATGTGGAGCGCCTAGAAGAGGGATCTGATGCAGGACATTGGAATGTATTGATTAGAAAGGTATTATATGTCCTAAAAATGCGAAAAAGTGAACAGAGGAGGAAATTCCTTTACATATGGAGTAAGATAATGGTTATTTCCTGTGTGTTAGCCGTCTCACTAGATCCTCTGTTCTTGTACATTTTAATCATTGATCAAGATAACAAGTGTCTTCAAATGGACAAAAAGCTGAGCACTACTATTCTTGTGTTGCGATCACTCACGGATATCATTTTCGCTGTGCCTTTTATTTGTAAAGTTCACAAAAGCGTTACATTTCAAATGCACAAAAAGTTTGGGGCTAATGTGGCTGCAAATACCACAAGTACTGTGGCCTCAAGTACCCAGCAAATTGAAGGAAATTTGTATGGGAAATCAAAAGGAAAAGCGTTGACTAAAGTTGGCAAGAAAATAGCTCAGAAGATGTCATGGTTATACTTCTCCTACATAAATGATTTTCTCGCTCTTCTTCCGGTCCCACAACTGCTAATAGTAGTTACATTTTACAACATGAGAGGCGCTGAATATGTGGAACATAAAAAGCTTCTGAATGCCTTCATTTTTGGTCAATATCTACCAAGGATATATCGAGTTCACCAGTCGTCCAAGAAGCTTCGAGAGGTTGTTGGAACTTGGTTTAAAGGTCTATACAATTTTTTTCTCTACATTCTTGCCAGCCATATACTTGGAGCTTTTTGGTATTTCTTTTCTATTCAACAAGAGACATTATGCTGGTACAATGCCTGTGCAAAACATAGTCCAGATCCTGTTGGGTGTATGAATACTTTCTACTGTGGGCATCAAACTACTAATTCAAGAAACATAGCATTTCTAAACGAGCATTGCCCGTTAGATACTCCAGATGGTGTCTTACCCCAATTTAATTTTGGAATATTTCTAGATTCCCTTCAGAATCATAACGTAGACCACATACAGTTCGGAAGGAAGTTATTTTACTCTTTCTGGTGGGGCTTGCGAAATCTAAGTAATTTTGGGACGAATCTGACAACAAGTACGTACGTGTGGGAAAACTTGTTTGCGATTCTCATTTCGGTCGTTGGCTTGCTTCTGTTTTTATATTTCATTGGAAACGTGCAGATGGAAGCTACAAAAACAGAGGAGAGGAGACAAAAAGCGGAGGAAGAAGAGGAGACGAAACAGAAGATTCGGATGAGGATGCTAGATGTACGAAGGTGGATATCCGACAATAAATTCCCCGATGATGTCAAGAAAGAGATCATGGATAGCATAGAAAAAATATTGAAAAAAGACAAAGATGCTGATGTCCACAAGCCATTCCTTATTCTTCCCTGGCAAACCAAAAGAACTGTTAAACGCCATCTTTTCATGGGTACACTTAAGAAAGTAAATAGGCTTAAAGGCATGAATGAAAAAGTGTTGACGTTGATGTGCGACTGTCTGAAGCCAGTGACGTACGGTGAGACCAGCTTCGTTTTTCGAATGGGAGATCCACTCGATTGCATGATGTTCATTATCCAAGGAACAGTGTGGACCTACGGGTCGAGTGATAATCAAGTTGGGCAAGGAGTCTCATCAATGGCCATCAAGCGCGTCGGGAAAGGTTACATTTATGGGGAAGAGCTTCTCGATTGGGCATCAGACTGTTTCAACGAACTTCCAGTCTCCAGCAAACATGTCAAAAGTCAGACAAAAGTGGAAGCATTTGTGCTCATGGCCAAGGACTTGGAAACCGTTGTCTCCAGATGCAAAACATATTGGGACTTGCACAACTGTAACAATCCTGAAGAGGTGGCAGTCTCTACCGTTCGTCGTTTCTTTAGAAGGCCGCAACGACGTCCGCCCCTGTCCTCGGCTGAAATATGGGATGACATTAGTCGTAGAACGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

644

Amino Acids

74.6

Weight (kDa)

9.33

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 86 - 396 1.1e-09 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1579
AatII GACGTC 1 cut(s) 1879
AccI GTMKAC 1 cut(s) 984
AccII CGCG 1 cut(s) 1632
AciI CCGC 3 cut(s) 1196, 1868, 1880
AclWI GGATC 4 cut(s) 52, 179, 818, 1523
AcoI YGGCCR 2 cut(s) 1620, 1755
AcsI RAATTY 3 cut(s) 125, 421, 1271
AcuI CTGAAG 3 cut(s) 953, 1502, 1845
AcyI GRCGYC 1 cut(s) 1876
AfaI GTAC 9 cut(s) 200, 388, 403, 797, 1075, 1079, 1248, 1414, 1496
AfiI CCNNNNNNNGG 2 cut(s) 40, 1891
AflII CTTAAG 1 cut(s) 1418
AflIII ACRYGT 2 cut(s) 1080, 1714
AgsI TTSAA 7 cut(s) 236, 341, 416, 776, 876, 1324, 1690
AjnI CCWGG 1 cut(s) 1370
AluBI AGCT 9 cut(s) 17, 250, 476, 604, 673, 752, 1166, 1509, 1663
AluI AGCT 9 cut(s) 17, 250, 476, 604, 673, 752, 1166, 1509, 1663
Alw21I GWGCWC 2 cut(s) 257, 1752
Alw26I GTCTC 9 cut(s) 181, 776, 1180, 1205, 1496, 1615, 1708, 1783, 1843
AlwI GGATC 4 cut(s) 52, 179, 818, 1523
AlwNI CAGNNNCTG 1 cut(s) 827
AoxI GGCC 4 cut(s) 393, 1620, 1755, 1865
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 3 cut(s) 125, 421, 1271
ArsI GACNNNNNNTTYG 2 cut(s) 1686, 1718
Asp700I GAANNNNTTC 4 cut(s) 16, 614, 845, 1662
AspLEI GCGC 3 cut(s) 33, 581, 1632
AspS9I GGNCC 2 cut(s) 535, 1572
AsuHPI GGTGA 2 cut(s) 647, 1511
AsuII TTCGAA 1 cut(s) 1519
AvaII GGWCC 2 cut(s) 535, 1572
BalI TGGCCA 2 cut(s) 1622, 1757
BarI GAAGNNNNNNTAC 2 cut(s) 998, 1030
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 257, 1752
BbvI GCAGC 1 cut(s) 358
BccI CCATC 4 cut(s) 917, 1153, 1407, 1631
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 1372
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 9 cut(s) 181, 776, 1180, 1205, 1496, 1615, 1708, 1783, 1843
BfaI CTAG 4 cut(s) 35, 182, 959, 1241
BfoI RGCGCY 2 cut(s) 34, 582
BfrI CTTAAG 1 cut(s) 1418
BisI GCNGC 2 cut(s) 372, 1868
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 2 cut(s) 373, 1869
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 1372
Bme18I GGWCC 2 cut(s) 535, 1572
BmgT120I GGNCC 2 cut(s) 535, 1572
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 1372
BmsI GCATC 6 cut(s) 40, 868, 1227, 1327, 1685, 1775
BoxI GACNNNNGTC 1 cut(s) 1914
BpiI GAAGAC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 1518, 1550
BpmI CTGGAG 3 cut(s) 903, 1690, 1765
Bpu1102I GCTNAGC 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 1519
BpuEI CTTGAG 1 cut(s) 382
BsaAI YACGTR 2 cut(s) 1077, 1081
BsaHI GRCGYC 1 cut(s) 1876
BsaI GGTCTC 1 cut(s) 1496
BsaJI CCNNGG 5 cut(s) 638, 1370, 1558, 1758, 1890
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 1891
Bse1I ACTGG 3 cut(s) 658, 1487, 1700
Bse3DI GCAATG 1 cut(s) 901
BseBI CCWGG 1 cut(s) 1372
BseDI CCNNGG 5 cut(s) 638, 1370, 1558, 1758, 1890
BseGI GGATG 3 cut(s) 1236, 1242, 1912
BseLI CCNNNNNNNGG 2 cut(s) 40, 1891
BseMI GCAATG 1 cut(s) 901
BseMII CTCAG 2 cut(s) 242, 491
BseNI ACTGG 3 cut(s) 658, 1487, 1700
BseRI GAGGAG 4 cut(s) 133, 1193, 1198, 1223
BseXI GCAGC 1 cut(s) 358
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 1175
Bsh1236I CGCG 1 cut(s) 1632
Bsh1285I CGRYCG 1 cut(s) 1116
BshFI GGCC 4 cut(s) 395, 1622, 1757, 1867
BsiEI CGRYCG 1 cut(s) 1116
BsiHKAI GWGCWC 2 cut(s) 257, 1752
BsiSI CCGG 1 cut(s) 533
BsiWI CGTACG 2 cut(s) 1077, 1494
BslFI GGGAC 3 cut(s) 521, 1069, 1814
BslI CCNNNNNNNGG 2 cut(s) 40, 1891
BsmAI GTCTC 9 cut(s) 181, 776, 1180, 1205, 1496, 1615, 1708, 1783, 1843
BsmBI CGTCTC 2 cut(s) 181, 1205
BsmFI GGGAC 3 cut(s) 521, 1069, 1814
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 4 cut(s) 395, 1622, 1757, 1867
Bso31I GGTCTC 1 cut(s) 1496
Bsp119I TTCGAA 1 cut(s) 1519
Bsp1286I GDGCHC 2 cut(s) 257, 1752
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 3 cut(s) 1196, 1868, 1880
BspANI GGCC 4 cut(s) 395, 1622, 1757, 1867
BspCNI CTCAG 2 cut(s) 243, 490
BspFNI CGCG 1 cut(s) 1632
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 4 cut(s) 52, 179, 818, 1523
BspQI GCTCTTC 3 cut(s) 7, 531, 1653
BspT104I TTCGAA 1 cut(s) 1519
BspTI CTTAAG 1 cut(s) 1418
BspTNI GGTCTC 1 cut(s) 1496
BsrDI GCAATG 1 cut(s) 901
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 3 cut(s) 658, 1487, 1700
BssECI CCNNGG 5 cut(s) 638, 1370, 1558, 1758, 1890
BssMI GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
BssNI GRCGYC 1 cut(s) 1876
BssT1I CCWWGG 3 cut(s) 638, 1558, 1758
Bst2UI CCWGG 1 cut(s) 1372
Bst6I CTCTTC 6 cut(s) 7, 33, 531, 1200, 1653, 1821
BstACI GRCGYC 1 cut(s) 1876
BstAFI CTTAAG 1 cut(s) 1418
BstAUI TGTACA 1 cut(s) 198
BstBAI YACGTR 2 cut(s) 1077, 1081
BstBI TTCGAA 1 cut(s) 1519
BstC8I GCNNGC 3 cut(s) 736, 1034, 1124
BstDEI CTNAG 3 cut(s) 251, 477, 1043
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 1236, 1242, 1912
BstFNI CGCG 1 cut(s) 1632
BstH2I RGCGCY 2 cut(s) 34, 582
BstHHI GCGC 3 cut(s) 33, 581, 1632
BstKTI GATC 7 cut(s) 47, 187, 217, 278, 826, 1299, 1531
BstMAI GTCTC 9 cut(s) 181, 776, 1180, 1205, 1496, 1615, 1708, 1783, 1843
BstMBI GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
BstMCI CGRYCG 1 cut(s) 1116
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 1372
BstNSI RCATGY 1 cut(s) 1718
BstPAI GACNNNNGTC 1 cut(s) 1914
BstSCI CCNGG 1 cut(s) 1370
BstSNI TACGTA 1 cut(s) 1077
BstUI CGCG 1 cut(s) 1632
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 4 cut(s) 44, 184, 823, 1528
BstXI CCANNNNNNTGG 2 cut(s) 746, 1765
BstYI RGATCY 4 cut(s) 44, 184, 823, 1528
BsuRI GGCC 4 cut(s) 395, 1622, 1757, 1867
BtsCI GGATG 3 cut(s) 1236, 1242, 1912
BtsIMutI CAGTG 2 cut(s) 1494, 1572
Cac8I GCNNGC 3 cut(s) 736, 1034, 1124
CaiI CAGNNNCTG 1 cut(s) 827
CfoI GCGC 3 cut(s) 33, 581, 1632
Cfr13I GGNCC 2 cut(s) 535, 1572
CseI GACGC 1 cut(s) 1621
Csp6I GTAC 9 cut(s) 199, 387, 402, 796, 1074, 1078, 1247, 1413, 1495
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 8 cut(s) 489, 571, 1300, 1408, 1444, 1543, 1715, 1753
CviQI GTAC 9 cut(s) 199, 387, 402, 796, 1074, 1078, 1247, 1413, 1495
DdeI CTNAG 3 cut(s) 251, 477, 1043
DpnI GATC 7 cut(s) 46, 186, 216, 277, 825, 1298, 1530
DpnII GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
DraI TTTAAA 1 cut(s) 700
DrdI GACNNNNNNGTC 1 cut(s) 1579
DseDI GACNNNNNNGTC 1 cut(s) 1579
EaeI YGGCCR 2 cut(s) 1620, 1755
Eam1104I CTCTTC 6 cut(s) 7, 33, 531, 1200, 1653, 1821
EarI CTCTTC 6 cut(s) 7, 33, 531, 1200, 1653, 1821
EciI GGCGGA 1 cut(s) 1869
Eco105I TACGTA 1 cut(s) 1077
Eco130I CCWWGG 3 cut(s) 638, 1558, 1758
Eco31I GGTCTC 1 cut(s) 1496
Eco32I GATATC 2 cut(s) 289, 1260
Eco47I GGWCC 2 cut(s) 535, 1572
Eco57I CTGAAG 3 cut(s) 953, 1502, 1845
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 1370
EcoRV GATATC 2 cut(s) 289, 1260
EcoT14I CCWWGG 3 cut(s) 638, 1558, 1758
ErhI CCWWGG 3 cut(s) 638, 1558, 1758
Esp3I CGTCTC 2 cut(s) 181, 1205
FaeI CATG 8 cut(s) 492, 574, 1303, 1411, 1447, 1546, 1718, 1756
FaqI GGGAC 3 cut(s) 521, 1069, 1814
FatI CATG 8 cut(s) 488, 570, 1299, 1407, 1443, 1542, 1714, 1752
FauNDI CATATG 1 cut(s) 137
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 2 cut(s) 372, 1868
FokI GGATG 3 cut(s) 1243, 1249, 1919
Fsp4HI GCNGC 2 cut(s) 372, 1868
FspBI CTAG 4 cut(s) 35, 182, 959, 1241
GlaI GCGC 3 cut(s) 32, 580, 1631
GluI GCNGC 2 cut(s) 372, 1868
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 3 cut(s) 903, 1690, 1765
HaeII RGCGCY 2 cut(s) 34, 582
HaeIII GGCC 4 cut(s) 395, 1622, 1757, 1867
HapII CCGG 1 cut(s) 533
HgaI GACGC 1 cut(s) 1621
HhaI GCGC 3 cut(s) 33, 581, 1632
Hin1I GRCGYC 1 cut(s) 1876
Hin1II CATG 8 cut(s) 492, 574, 1303, 1411, 1447, 1546, 1718, 1756
Hin6I GCGC 3 cut(s) 31, 579, 1630
HinP1I GCGC 3 cut(s) 31, 579, 1630
HincII GTYRAC 2 cut(s) 453, 1461
HindII GTYRAC 2 cut(s) 453, 1461
HindIII AAGCTT 2 cut(s) 602, 671
HinfI GANTC 6 cut(s) 962, 973, 1060, 1102, 1225, 1608
HpaII CCGG 1 cut(s) 533
HphI GGTGA 2 cut(s) 647, 1511
Hpy99I CGWCG 3 cut(s) 1637, 1854, 1878
HpyAV CCTTC 6 cut(s) 410, 625, 977, 996, 1245, 1857
HpyCH4IV ACGT 7 cut(s) 981, 1076, 1080, 1152, 1463, 1493, 1876
HpyCH4V TGCA 8 cut(s) 53, 346, 374, 809, 1156, 1542, 1788, 1807
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 3 cut(s) 251, 477, 1043
HpySE526I ACGT 7 cut(s) 981, 1076, 1080, 1152, 1463, 1493, 1876
Hsp92I GRCGYC 1 cut(s) 1876
Hsp92II CATG 8 cut(s) 492, 574, 1303, 1411, 1447, 1546, 1718, 1756
HspAI GCGC 3 cut(s) 31, 579, 1630
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
LguI GCTCTTC 3 cut(s) 7, 531, 1653
LmnI GCTCC 2 cut(s) 28, 749
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 6 cut(s) 40, 868, 1227, 1327, 1685, 1775
MaeI CTAG 4 cut(s) 35, 182, 959, 1241
MaeII ACGT 7 cut(s) 981, 1076, 1080, 1152, 1463, 1493, 1876
MaeIII GTNAC 5 cut(s) 331, 556, 1489, 1643, 1814
MalI GATC 7 cut(s) 46, 186, 216, 277, 825, 1298, 1530
MboI GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
MflI RGATCY 4 cut(s) 44, 184, 823, 1528
MhlI GDGCHC 2 cut(s) 257, 1752
MlsI TGGCCA 2 cut(s) 1622, 1757
MluCI AATT 9 cut(s) 125, 411, 421, 712, 871, 938, 943, 1048, 1271
MluNI TGGCCA 2 cut(s) 1622, 1757
MlyI GAGTC 1 cut(s) 1617
MmeI TCCRAC 2 cut(s) 667, 1287
Mox20I TGGCCA 2 cut(s) 1622, 1757
MroXI GAANNNNTTC 4 cut(s) 16, 614, 845, 1662
MscI TGGCCA 2 cut(s) 1622, 1757
MseI TTAA 6 cut(s) 206, 699, 942, 1392, 1419, 1437
MslI CAYNNNNRTG 1 cut(s) 63
Msp20I TGGCCA 2 cut(s) 1622, 1757
MspCI CTTAAG 1 cut(s) 1418
MspI CCGG 1 cut(s) 533
MspR9I CCNGG 1 cut(s) 1372
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 1372
MvnI CGCG 1 cut(s) 1632
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeI CATATG 1 cut(s) 137
NdeII GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
NlaIII CATG 8 cut(s) 492, 574, 1303, 1411, 1447, 1546, 1718, 1756
NlaIV GGNNCC 1 cut(s) 537
NmeAIII GCCGAG 1 cut(s) 1871
NmuCI GTSAC 1 cut(s) 1489
NspI RCATGY 1 cut(s) 1718
NspV TTCGAA 1 cut(s) 1519
PciI ACATGT 1 cut(s) 1714
PciSI GCTCTTC 3 cut(s) 7, 531, 1653
PctI GAATGC 1 cut(s) 616
PdmI GAANNNNTTC 4 cut(s) 16, 614, 845, 1662
PfeI GAWTC 5 cut(s) 962, 973, 1060, 1102, 1225
Pfl23II CGTACG 2 cut(s) 1077, 1494
PkrI GCNGC 2 cut(s) 373, 1869
PleI GAGTC 1 cut(s) 1616
PpsI GAGTC 1 cut(s) 1616
Ppu21I YACGTR 2 cut(s) 1077, 1081
PscI ACATGT 1 cut(s) 1714
PshAI GACNNNNGTC 1 cut(s) 1914
Psp6I CCWGG 1 cut(s) 1370
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 1370
PspLI CGTACG 2 cut(s) 1077, 1494
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 2 cut(s) 535, 1572
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 4 cut(s) 44, 184, 823, 1528
RsaI GTAC 9 cut(s) 200, 388, 403, 797, 1075, 1079, 1248, 1414, 1496
RsaNI GTAC 9 cut(s) 199, 387, 402, 796, 1074, 1078, 1247, 1413, 1495
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 3 cut(s) 7, 531, 1653
SaqAI TTAA 6 cut(s) 206, 699, 942, 1392, 1419, 1437
SatI GCNGC 2 cut(s) 372, 1868
Sau3AI GATC 7 cut(s) 44, 184, 214, 275, 823, 1296, 1528
Sau96I GGNCC 2 cut(s) 535, 1572
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 1 cut(s) 1617
ScrFI CCNGG 1 cut(s) 1372
SduI GDGCHC 2 cut(s) 257, 1752
SfaNI GCATC 6 cut(s) 40, 868, 1227, 1327, 1685, 1775
SfuI TTCGAA 1 cut(s) 1519
SinI GGWCC 2 cut(s) 535, 1572
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 397, 1418
SmoI CTYRAG 2 cut(s) 397, 1418
SnaBI TACGTA 1 cut(s) 1077
Sse9I AATT 9 cut(s) 125, 411, 421, 712, 871, 938, 943, 1048, 1271
SsiI CCGC 3 cut(s) 1196, 1868, 1880
SspI AATATT 2 cut(s) 954, 1320
SspMI CTAG 4 cut(s) 35, 182, 959, 1241
StyD4I CCNGG 1 cut(s) 1370
StyI CCWWGG 3 cut(s) 638, 1558, 1758
TaiI ACGT 7 cut(s) 984, 1079, 1083, 1155, 1466, 1496, 1879
TaqI TCGA 6 cut(s) 649, 676, 1519, 1536, 1583, 1668
TaqII GACCGA 1 cut(s) 1102
TasI AATT 9 cut(s) 125, 411, 421, 712, 871, 938, 943, 1048, 1271
TatI WGTACW 2 cut(s) 198, 386
TauI GCSGC 1 cut(s) 1870
TfiI GAWTC 5 cut(s) 962, 973, 1060, 1102, 1225
Tru1I TTAA 6 cut(s) 206, 699, 942, 1392, 1419, 1437
Tru9I TTAA 6 cut(s) 206, 699, 942, 1392, 1419, 1437
TscAI CASTG 2 cut(s) 1494, 1572
TseFI GTSAC 1 cut(s) 1489
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 1489
TspDTI ATGAA 7 cut(s) 607, 854, 1132, 1396, 1460, 1464, 1540
TspGWI ACGGA 2 cut(s) 24, 299
TspRI CASTG 2 cut(s) 1494, 1572
Vha464I CTTAAG 1 cut(s) 1418
VpaK11BI GGWCC 2 cut(s) 535, 1572
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 3 cut(s) 125, 421, 1271
XbaI TCTAGA 1 cut(s) 958
XceI RCATGY 1 cut(s) 1718
XcmI CCANNNNNNNNNTGG 2 cut(s) 388, 944
XmiI GTMKAC 1 cut(s) 984
XmnI GAANNNNTTC 4 cut(s) 16, 614, 845, 1662
XspI CTAG 4 cut(s) 35, 182, 959, 1241
ZraI GACGTC 1 cut(s) 1877
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.