Rmu_sc0004125.1_g000006

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004125.1
OG0000119
Physical Location & Seq
Forward (+)
37995 .. 42719
4725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004125.1_g000006.1.cds

Sequence Viewer

Length: 1815 bp
atgtccaacaagcaggtacccaatgatgtccctatgatgagcatcacacggggaattaagaacaatttcaacaatgttgaggcacatccgtcatatcccccgtggagtgatgcagatgcagtttcaacaaaacaaaaattggaacgaacacttctttcagtttcattctggaatacgatgttcgtaattgcatgtgtgattgcggtctcattagacccgttgttcttctacattccggtcatcaatgaagaacaaaagtgccttgcggtagacaaagagttgaggactatagctctcactttgcgatcgctcgctgatgtcactttcgtagtgaatatcatatatcatgtttgcaaagccattaacgatgcgtacaaagtacacagagaaaaaaagtatgatgaattggtatgggattgggaattttcgatgatatcagcagctgagataattccatttgctaaattagttgctgggaagctagcatggcgctctacgctaaccagcattttagctgtttttcccatgccacagctgcttctagtatttgtcttcttcaaaatgagaggccatggatacttccagctgaatttctttcttctcgctcaatatctgccaaagatctatcgaatttacctatcatgtcagaaactcagacaaactactggaatatgggctaaagctctgtttaatttttttctatatatccttgcaagtcatgtccttggagcttgttggtactttttttctattcaacgagaaacttcttgttggcattgggcatgtgtgaatgatagtaaagatgttgaaggatgtatgagtaccttatactgcggggttcacgatactgctacaagaaatgccacattccttaatcagttttgccgtataagtgttgaagagaatgctaaggccccttttgattttggaatatttctggattccctcaaaaatggtatcacaagggatatacatttcggaacgaagttatcttactctttttggtggggattacgtaatctaagtactttgggcgcaaatctcgaaacaagcacctatgtgtgggaaaattgctttgcagtttttatttttgtcattggcttgctactatttctatatctcattggtaatatacagagatttatgtccatggcagctaaaagatgggaggatataagaaaagagatacaattgaaaacgaaagatatagaaagatcgatggacagaaatgaggtcccagacaatttgaagaaagaaattatgaagaacataaaggaaaaactggaagagatgaatgatactgatcttgagaatcttttctctattcttccaatgtctaccaaaaactgtctaaagcgtttcctcggcatgaaactgctaaagaaagtaccgaagcttgcaaggatggatgaaagagtgttgaaattcatgtgtgactatctaaggccagtgatgtatgccgaggactccgtggttttacgaatgggagatccaatatatagcatgctattcattatagaaggcacattattgacccacaaaactaccagtaatgatagtcatgttgcaactgaaaacgcaaaaatgggtggtatttcaagttccccatcggtgggcaaccttgacaaaggtgacgtttacggcgccgaagaactgatcgagtgggtaacacaaaagaaggatttcggccagcttcccggctctgccttcaatgtgaaatgcgattcaaaagtagaaggctttgttctcacggccaaggacttgagaagtgtagtttccaaatacgaaaactggtggaaaattggcattagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

604

Amino Acids

69.48

Weight (kDa)

8.56

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 1643
AccI GTMKAC 2 cut(s) 270, 1337
AciI CCGC 3 cut(s) 203, 266, 834
AclWI GGATC 1 cut(s) 1484
AcoI YGGCCR 2 cut(s) 1687, 1752
AcsI RAATTY 4 cut(s) 422, 589, 630, 1424
AcyI GRCGYC 1 cut(s) 1644
AfaI GTAC 7 cut(s) 18, 374, 381, 740, 823, 1027, 1389
AfiI CCNNNNNNNGG 3 cut(s) 1062, 1612, 1613
AleI CACNNNNGTG 1 cut(s) 1058
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 1484
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 5 cut(s) 568, 912, 1445, 1687, 1752
ApeKI GCWGC 3 cut(s) 440, 535, 1154
ApoI RAATTY 4 cut(s) 422, 589, 630, 1424
AsiSI GCGATCGC 1 cut(s) 308
Asp700I GAANNNNTTC 3 cut(s) 65, 1316, 1682
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 3 cut(s) 492, 1037, 1646
AspS9I GGNCC 2 cut(s) 913, 1234
AsuC2I CCSGG 1 cut(s) 1698
AsuHPI GGTGA 1 cut(s) 1643
AsuNHI GCTAGC 1 cut(s) 481
AvaII GGWCC 1 cut(s) 1234
BanI GGYRCC 2 cut(s) 16, 1643
BarI GAAGNNNNNNTAC 2 cut(s) 977, 1009
BbsI GAAGAC 1 cut(s) 544
BbvI GCAGC 3 cut(s) 452, 522, 1166
BccI CCATC 4 cut(s) 1158, 1213, 1399, 1615
BceAI ACGGC 3 cut(s) 870, 1657, 1767
BciVI GTATCC 1 cut(s) 569
BcnI CCSGG 1 cut(s) 1698
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 3 cut(s) 482, 542, 1813
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 2 cut(s) 493, 1647
BfuAI ACCTGC 1 cut(s) 4
BfuI GTATCC 1 cut(s) 569
BglII AGATCT 1 cut(s) 621
BisI GCNGC 3 cut(s) 441, 536, 1155
BlsI GCNGC 3 cut(s) 442, 537, 1156
BmcAI AGTACT 1 cut(s) 1027
Bme1390I CCNGG 1 cut(s) 1698
Bme18I GGWCC 1 cut(s) 1234
BmgT120I GGNCC 2 cut(s) 913, 1234
BmiI GGNNCC 4 cut(s) 18, 915, 1236, 1645
BmrFI CCNGG 1 cut(s) 1698
BmsI GCATC 4 cut(s) 51, 100, 106, 358
BmtI GCTAGC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 544
Bpu10I CCTNAGC 1 cut(s) 909
BpuEI CTTGAG 2 cut(s) 1328, 1783
BpuMI CCSGG 1 cut(s) 1698
Bsa29I ATCGAT 1 cut(s) 1217
BsaAI YACGTR 1 cut(s) 1016
BsaBI GATNNNNATC 2 cut(s) 41, 1302
BsaHI GRCGYC 1 cut(s) 1644
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 8 cut(s) 101, 571, 724, 1149, 1363, 1461, 1470, 1755
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 3 cut(s) 1062, 1612, 1613
Bse1I ACTGG 5 cut(s) 670, 1287, 1448, 1548, 1796
Bse8I GATNNNNATC 2 cut(s) 41, 1302
BseCI ATCGAT 1 cut(s) 1217
BseDI CCNNGG 8 cut(s) 101, 571, 724, 1149, 1363, 1461, 1470, 1755
BseGI GGATG 4 cut(s) 85, 818, 1410, 1414
BseJI GATNNNNATC 2 cut(s) 41, 1302
BseLI CCNNNNNNNGG 3 cut(s) 1062, 1612, 1613
BseMII CTCAG 2 cut(s) 435, 667
BseNI ACTGG 5 cut(s) 670, 1287, 1448, 1548, 1796
BseXI GCAGC 3 cut(s) 452, 522, 1166
BseYI CCCAGC 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 5 cut(s) 570, 914, 1447, 1689, 1754
BshNI GGYRCC 2 cut(s) 16, 1643
BshVI ATCGAT 1 cut(s) 1217
BsiEI CGRYCG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 236, 1698
BslFI GGGAC 2 cut(s) 14, 1220
BslI CCNNNNNNNGG 3 cut(s) 1062, 1612, 1613
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 14, 1220
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 5 cut(s) 570, 914, 1447, 1689, 1754
Bso31I GGTCTC 1 cut(s) 211
Bsp143I GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
Bsp19I CCATGG 2 cut(s) 571, 1149
BspACI CCGC 3 cut(s) 203, 266, 834
BspANI GGCC 5 cut(s) 570, 914, 1447, 1689, 1754
BspCNI CTCAG 2 cut(s) 436, 666
BspDI ATCGAT 1 cut(s) 1217
BspLI GGNNCC 4 cut(s) 18, 915, 1236, 1645
BspMI ACCTGC 1 cut(s) 4
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 1 cut(s) 1484
BspT107I GGYRCC 2 cut(s) 16, 1643
BspTNI GGTCTC 1 cut(s) 211
BsrI ACTGG 5 cut(s) 670, 1287, 1448, 1548, 1796
BssECI CCNNGG 8 cut(s) 101, 571, 724, 1149, 1363, 1461, 1470, 1755
BssMI GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
BssNI GRCGYC 1 cut(s) 1644
BssT1I CCWWGG 4 cut(s) 571, 724, 1149, 1755
Bst4CI ACNGT 1 cut(s) 1349
Bst6I CTCTTC 2 cut(s) 894, 1281
BstACI GRCGYC 1 cut(s) 1644
BstBAI YACGTR 1 cut(s) 1016
BstC8I GCNNGC 6 cut(s) 312, 483, 1103, 1398, 1505, 1691
BstDEI CTNAG 5 cut(s) 444, 653, 909, 1022, 1442
BstDSI CCRYGG 4 cut(s) 101, 571, 1149, 1470
BstF5I GGATG 4 cut(s) 85, 818, 1410, 1414
BstH2I RGCGCY 2 cut(s) 493, 1647
BstHHI GCGC 3 cut(s) 492, 1037, 1646
BstKTI GATC 6 cut(s) 308, 624, 1217, 1306, 1492, 1659
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 3 cut(s) 487, 496, 535
BstNSI RCATGY 3 cut(s) 195, 786, 1507
BstSCI CCNGG 1 cut(s) 1696
BstSFI CTRYAG 1 cut(s) 288
BstSNI TACGTA 1 cut(s) 1016
BstV1I GCAGC 3 cut(s) 452, 522, 1166
BstV2I GAAGAC 1 cut(s) 544
BstX2I RGATCY 2 cut(s) 621, 1489
BstYI RGATCY 2 cut(s) 621, 1489
Bsu15I ATCGAT 1 cut(s) 1217
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 5 cut(s) 570, 914, 1447, 1689, 1754
BsuTUI ATCGAT 1 cut(s) 1217
BtgI CCRYGG 4 cut(s) 101, 571, 1149, 1470
BtsCI GGATG 4 cut(s) 85, 818, 1410, 1414
BtsIMutI CAGTG 1 cut(s) 1455
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 6 cut(s) 312, 483, 1103, 1398, 1505, 1691
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 3 cut(s) 492, 1037, 1646
Cfr13I GGNCC 2 cut(s) 913, 1234
ClaI ATCGAT 1 cut(s) 1217
Csp6I GTAC 7 cut(s) 17, 373, 380, 739, 822, 1026, 1388
CviQI GTAC 7 cut(s) 17, 373, 380, 739, 822, 1026, 1388
DdeI CTNAG 5 cut(s) 444, 653, 909, 1022, 1442
DinI GGCGCC 1 cut(s) 1645
DpnI GATC 6 cut(s) 307, 623, 1216, 1305, 1491, 1658
DpnII GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
EaeI YGGCCR 2 cut(s) 1687, 1752
Eam1104I CTCTTC 2 cut(s) 894, 1281
EarI CTCTTC 2 cut(s) 894, 1281
Eco105I TACGTA 1 cut(s) 1016
Eco130I CCWWGG 4 cut(s) 571, 724, 1149, 1755
Eco31I GGTCTC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 1234
EcoO109I RGGNCCY 2 cut(s) 913, 1234
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 4 cut(s) 571, 724, 1149, 1755
EgeI GGCGCC 1 cut(s) 1645
EheI GGCGCC 1 cut(s) 1645
ErhI CCWWGG 4 cut(s) 571, 724, 1149, 1755
FaqI GGGAC 2 cut(s) 14, 1220
FauI CCCGC 1 cut(s) 827
FblI GTMKAC 2 cut(s) 270, 1337
Fnu4HI GCNGC 3 cut(s) 441, 536, 1155
FokI GGATG 4 cut(s) 72, 825, 1417, 1421
Fsp4HI GCNGC 3 cut(s) 441, 536, 1155
FspBI CTAG 3 cut(s) 482, 542, 1813
GlaI GCGC 3 cut(s) 491, 1036, 1645
GluI GCNGC 3 cut(s) 441, 536, 1155
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 2 cut(s) 493, 1647
HaeIII GGCC 5 cut(s) 570, 914, 1447, 1689, 1754
HapII CCGG 2 cut(s) 236, 1698
HhaI GCGC 3 cut(s) 492, 1037, 1646
Hin1I GRCGYC 1 cut(s) 1644
Hin6I GCGC 3 cut(s) 490, 1035, 1644
HinP1I GCGC 3 cut(s) 490, 1035, 1644
HindIII AAGCTT 1 cut(s) 1394
HinfI GANTC 4 cut(s) 941, 1312, 1466, 1724
HpaII CCGG 2 cut(s) 236, 1698
HphI GGTGA 1 cut(s) 1643
Hpy166II GTNNAC 5 cut(s) 271, 382, 841, 1338, 1639
Hpy188I TCNGA 3 cut(s) 648, 656, 980
Hpy188III TCNNGA 5 cut(s) 169, 842, 938, 1043, 1307
Hpy8I GTNNAC 5 cut(s) 271, 382, 841, 1338, 1639
HpyAV CCTTC 5 cut(s) 803, 1514, 1672, 1717, 1730
HpyCH4III ACNGT 1 cut(s) 1349
HpyCH4IV ACGT 2 cut(s) 1015, 1635
HpyCH4V TGCA 8 cut(s) 113, 119, 191, 354, 713, 1079, 1400, 1568
HpyF10VI GCNNNNNNNGC 3 cut(s) 487, 496, 535
HpyF3I CTNAG 5 cut(s) 444, 653, 909, 1022, 1442
HpySE526I ACGT 2 cut(s) 1015, 1635
Hsp92I GRCGYC 1 cut(s) 1644
HspAI GCGC 3 cut(s) 490, 1035, 1644
KasI GGCGCC 1 cut(s) 1643
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
LmnI GCTCC 1 cut(s) 728
Lsp1109I GCAGC 3 cut(s) 452, 522, 1166
LweI GCATC 4 cut(s) 51, 100, 106, 358
MaeI CTAG 3 cut(s) 482, 542, 1813
MaeII ACGT 2 cut(s) 1015, 1635
MaeIII GTNAC 4 cut(s) 319, 1433, 1631, 1666
MalI GATC 6 cut(s) 307, 623, 1216, 1305, 1491, 1658
MboI GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
MfeI CAATTG 1 cut(s) 1190
MflI RGATCY 2 cut(s) 621, 1489
Mly113I GGCGCC 1 cut(s) 1644
MlyI GAGTC 1 cut(s) 1460
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 8 cut(s) 73, 276, 560, 956, 1162, 1225, 1373, 1456
MroXI GAANNNNTTC 3 cut(s) 65, 1316, 1682
MseI TTAA 4 cut(s) 57, 363, 690, 873
MslI CAYNNNNRTG 1 cut(s) 1058
MspA1I CMGCKG 3 cut(s) 443, 535, 586
MspI CCGG 2 cut(s) 236, 1698
MspR9I CCNGG 1 cut(s) 1698
MunI CAATTG 1 cut(s) 1190
Mva1269I GAATGC 1 cut(s) 910
MwoI GCNNNNNNNGC 3 cut(s) 487, 496, 535
NarI GGCGCC 1 cut(s) 1644
NciI CCSGG 1 cut(s) 1698
NcoI CCATGG 2 cut(s) 571, 1149
NdeII GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
NheI GCTAGC 1 cut(s) 481
NlaIV GGNNCC 4 cut(s) 18, 915, 1236, 1645
NmeAIII GCCGAG 2 cut(s) 1344, 1486
NmuCI GTSAC 3 cut(s) 319, 1433, 1631
NspI RCATGY 3 cut(s) 195, 786, 1507
OliI CACNNNNGTG 1 cut(s) 1058
PaeI GCATGC 1 cut(s) 1507
PctI GAATGC 1 cut(s) 910
PdmI GAANNNNTTC 3 cut(s) 65, 1316, 1682
PfeI GAWTC 3 cut(s) 941, 1312, 1724
PkrI GCNGC 3 cut(s) 442, 537, 1156
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 1460
PluTI GGCGCC 1 cut(s) 1647
PpsI GAGTC 1 cut(s) 1460
Ppu21I YACGTR 1 cut(s) 1016
PpuMI RGGWCCY 1 cut(s) 1234
Psp5II RGGWCCY 1 cut(s) 1234
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 4 cut(s) 18, 915, 1236, 1645
PspPI GGNCC 2 cut(s) 913, 1234
PspPPI RGGWCCY 1 cut(s) 1234
PsrI GAACNNNNNNTAC 2 cut(s) 1585, 1617
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 2 cut(s) 621, 1489
PvuI CGATCG 1 cut(s) 308
PvuII CAGCTG 3 cut(s) 443, 535, 586
RgaI GCGATCGC 1 cut(s) 308
RsaI GTAC 7 cut(s) 18, 374, 381, 740, 823, 1027, 1389
RsaNI GTAC 7 cut(s) 17, 373, 380, 739, 822, 1026, 1388
RseI CAYNNNNRTG 1 cut(s) 1058
SaqAI TTAA 4 cut(s) 57, 363, 690, 873
SatI GCNGC 3 cut(s) 441, 536, 1155
Sau3AI GATC 6 cut(s) 305, 621, 1214, 1303, 1489, 1656
Sau96I GGNCC 2 cut(s) 913, 1234
ScaI AGTACT 1 cut(s) 1027
SchI GAGTC 1 cut(s) 1460
ScrFI CCNGG 1 cut(s) 1698
SfaAI GCGATCGC 1 cut(s) 308
SfaNI GCATC 4 cut(s) 51, 100, 106, 358
SfcI CTRYAG 1 cut(s) 288
SfoI GGCGCC 1 cut(s) 1645
SgfI GCGATCGC 1 cut(s) 308
SinI GGWCC 1 cut(s) 1234
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 2 cut(s) 1307, 1762
SmoI CTYRAG 2 cut(s) 1307, 1762
SnaBI TACGTA 1 cut(s) 1016
SphI GCATGC 1 cut(s) 1507
SsiI CCGC 3 cut(s) 203, 266, 834
SspDI GGCGCC 1 cut(s) 1643
SspI AATATT 1 cut(s) 933
SspMI CTAG 3 cut(s) 482, 542, 1813
StyD4I CCNGG 1 cut(s) 1696
StyI CCWWGG 4 cut(s) 571, 724, 1149, 1755
TaaI ACNGT 1 cut(s) 1349
TaiI ACGT 2 cut(s) 1018, 1638
TaqI TCGA 5 cut(s) 428, 628, 1044, 1217, 1659
TatI WGTACW 2 cut(s) 379, 1025
TfiI GAWTC 3 cut(s) 941, 1312, 1724
Tru1I TTAA 4 cut(s) 57, 363, 690, 873
Tru9I TTAA 4 cut(s) 57, 363, 690, 873
TscAI CASTG 1 cut(s) 1455
TseFI GTSAC 3 cut(s) 319, 1433, 1631
TseI GCWGC 3 cut(s) 440, 535, 1154
Tsp45I GTSAC 3 cut(s) 319, 1433, 1631
TspDTI ATGAA 9 cut(s) 153, 261, 417, 1277, 1307, 1385, 1417, 1425, 1501
TspGWI ACGGA 2 cut(s) 78, 1459
TspRI CASTG 1 cut(s) 1455
VpaK11BI GGWCC 1 cut(s) 1234
XapI RAATTY 4 cut(s) 422, 589, 630, 1424
XceI RCATGY 3 cut(s) 195, 786, 1507
XmiI GTMKAC 2 cut(s) 270, 1337
XmnI GAANNNNTTC 3 cut(s) 65, 1316, 1682
XspI CTAG 3 cut(s) 482, 542, 1813
ZrmI AGTACT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.