RchiOBHm_Chr3g0486311

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000119
Physical Location & Seq
Reverse (-)
33203385 .. 33206981
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45083

Sequence Viewer

Length: 1839 bp
ATGATGAGCATCACTCGGAGAAGCAAGTACAATTCTGACAATGTTGAGGCGCAACCGCGAGATCCCCTGGGGAGAGATCGAGATCCCCTGTGGAGAGATCCAGATGCAGTTTCAACAAAACAAAAATTGGAAGAAACACTTCTTTCAGTTTCATTCTGGAATACGATGTTCGTAATTACATGTGTGATTGCGGTCTCATTAGACCCGTTGTTCTTCTACATTCCGGTCATCAATGAAGAACAAAAGTGCCTTGCAGTAGACAAAGAGTTGAGGACTATAGCTCTCACTTTGCGATCGCTCACTGATGTCACTTTCGTAGTGAATATCATATATCATGTTTGCAAAGCCATTAACGATGCGTACAAAGTACACAAAGAAAAAAAGTCTGATGAATTGGCATCGGATTGGGAATTTTCGAAGGTATCAGCAGCTGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCATGGCACTCTACGCTGACCAGCATTTTAGCTGTTTTTCCCACGCCACAACTGCTTCTAGTATTTGTCTTCTTCAAAATGAGAGGCCATGGATACTGGGAGCATAGAAAGACTCTAAACGTCTTTCTCCTAGCTCAGTATCTGCCAAGGATCTATCGAATTTACCTATCATCTCACAAACTCAGACAAACTACTGGAATATGGACTAAAGCTCTGTTTAATTTTTTTCTATATATCCTTGCAAGTCATGTTGTTGGAGCTTTTTGGTACTTGTTTTCTGTTCAACGAGAAACGTCTTGTTGGCATCGGGCATGTGTAAATAATAATACAAATGTTGAAGGATGTATGAGTACCTTATACTGCGAGGGTCACAATACTACTGCAAGAAATGCCACATTCCTCAATCACTTGTGTCCTATAAGTGGTGAAGAGAATTCTAATACCCCTTTTGATTTTGGAATATATTTGGATTCCCTCAAAAATGGTATCACGGGGGATATACAATTTGGAACGAAGTTATCTTATTCTTTTTGGTGGGGATTGCGTAATCTAAGTAATTTTGGCACGAATCTTGAAACAAGTTCTTATGTGTGGGAAACTTGCTTTGCAGCTTTTATTTCTGTCTTCGGCTTGCTACTATTTCTATATCTGATTGGAAATATACAGACATTTCTGTCCATGGAGACTCAGAGACGGGAGCAGGACATGAGAAACAAGATACAATTGGTAGAGAATGATATAGCAAGATGGATGGACAGAAATGACCTCCCAGACAAAATGAAGAAAGTAATTATGAAGAACATAGAGCAAAAACTGAGAGAGAACAAAGATGCTGATCCTGAGGATCTTTTCTTTATTCTTCCAACCTATACCCAAAAGTATCTGAAGCGTTTCCTCGGCATGAAACTGCTAAAGAAAGTACCGAAGCTTGCAAGGATGGATGAAAGAGTATTGGGAATGGTGTGTGACTATCTAAAGCCAGTGGTGTATGCCGAGGGCTCCGTGGTTTTACAAATGGGAGATCCACTATGTAGCATGCTACTCATTACAGAAGGCACATTATTGACATACAGAACTACCAGTAATGATAGTCACGTTGCAATTGAAAACGCAAAAATGGGTAGTATTTCAAGTTCCCCGTCAGTGGGCATGCTTGAAAAAGATGACATTTACGGCGCCGAAGAACTGATCGAGTGGGTAACACAAAAGAAGGATTTAGGCCAGCTTCCCGGCTCTGCCTTCAATGTGAAATGCGATTCAAAAGTAGAAGGCTTTGTTCTCACGGCCAAGGACTTGAGAAGTGTAGTTTCCAAAAACGAAAACTGGTGGAAAATTGGCATTAGCAAGTCAGACCACAGCATATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

612

Amino Acids

70.18

Weight (kDa)

8.26

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 52 - 389 5.7e-08 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1144
AccB1I GGYRCC 1 cut(s) 1646
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 58
AciI CCGC 2 cut(s) 56, 191
AclWI GGATC 7 cut(s) 56, 77, 92, 629, 1301, 1323, 1487
AcoI YGGCCR 1 cut(s) 1755
AcsI RAATTY 3 cut(s) 410, 630, 904
AcuI CTGAAG 1 cut(s) 1376
AcyI GRCGYC 1 cut(s) 1647
AfaI GTAC 6 cut(s) 29, 362, 369, 740, 823, 1392
AfiI CCNNNNNNNGG 3 cut(s) 893, 1615, 1616
AflIII ACRYGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 66
Alw26I GTCTC 3 cut(s) 199, 1148, 1156
AlwI GGATC 7 cut(s) 56, 77, 92, 629, 1301, 1323, 1487
AlwNI CAGNNNCTG 2 cut(s) 431, 613
AoxI GGCC 3 cut(s) 556, 1690, 1755
ApeKI GCWGC 2 cut(s) 428, 1079
ApoI RAATTY 3 cut(s) 410, 630, 904
AsiSI GCGATCGC 1 cut(s) 296
Asp700I GAANNNNTTC 2 cut(s) 138, 1361
AspLEI GCGC 2 cut(s) 52, 1649
AsuC2I CCSGG 1 cut(s) 1701
AsuHPI GGTGA 1 cut(s) 908
AsuII TTCGAA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 469
AxyI CCTNAGG 1 cut(s) 1311
BanI GGYRCC 1 cut(s) 1646
BanII GRGCYC 1 cut(s) 1472
BbsI GAAGAC 2 cut(s) 532, 1087
BbvI GCAGC 2 cut(s) 440, 1091
BccI CCATC 3 cut(s) 1212, 1216, 1402
BceAI ACGGC 2 cut(s) 1660, 1770
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 557
BcnI CCSGG 1 cut(s) 1701
BcoDI GTCTC 3 cut(s) 199, 1148, 1156
BfaI CTAG 4 cut(s) 470, 530, 602, 1837
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 1650
BfuI GTATCC 1 cut(s) 557
BisI GCNGC 2 cut(s) 429, 1080
BlsI GCNGC 2 cut(s) 430, 1081
Bme1390I CCNGG 2 cut(s) 68, 1701
BmiI GGNNCC 2 cut(s) 1471, 1648
BmrFI CCNGG 2 cut(s) 68, 1701
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 6 cut(s) 18, 94, 346, 407, 784, 1291
BmtI GCTAGC 1 cut(s) 473
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 2 cut(s) 532, 1087
BplI GAGNNNNNCTC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 1786
BpuMI CCSGG 1 cut(s) 1701
BsaBI GATNNNNATC 3 cut(s) 8, 81, 1305
BsaHI GRCGYC 1 cut(s) 1647
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 9 cut(s) 66, 67, 559, 617, 1149, 1366, 1464, 1473, 1758
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 3 cut(s) 893, 1615, 1616
Bse1I ACTGG 5 cut(s) 572, 670, 1451, 1551, 1799
Bse21I CCTNAGG 1 cut(s) 1311
Bse8I GATNNNNATC 3 cut(s) 8, 81, 1305
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 9 cut(s) 66, 67, 559, 617, 1149, 1366, 1464, 1473, 1758
BseGI GGATG 4 cut(s) 818, 1227, 1413, 1417
BseJI GATNNNNATC 3 cut(s) 8, 81, 1305
BseLI CCNNNNNNNGG 3 cut(s) 893, 1615, 1616
BseMII CTCAG 6 cut(s) 423, 620, 667, 1172, 1277, 1302
BseNI ACTGG 5 cut(s) 572, 670, 1451, 1551, 1799
BseXI GCAGC 2 cut(s) 440, 1091
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 296
BshFI GGCC 3 cut(s) 558, 1692, 1757
BshNI GGYRCC 1 cut(s) 1646
BsiEI CGRYCG 1 cut(s) 296
BsiSI CCGG 2 cut(s) 224, 1701
BslI CCNNNNNNNGG 3 cut(s) 893, 1615, 1616
BsmAI GTCTC 3 cut(s) 199, 1148, 1156
BsmBI CGTCTC 1 cut(s) 1156
BsnI GGCC 3 cut(s) 558, 1692, 1757
Bso31I GGTCTC 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 1472
Bsp19I CCATGG 2 cut(s) 559, 1149
BspACI CCGC 2 cut(s) 56, 191
BspANI GGCC 3 cut(s) 558, 1692, 1757
BspCNI CTCAG 6 cut(s) 424, 619, 666, 1171, 1278, 1303
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 1471, 1648
BspOI GCTAGC 1 cut(s) 473
BspPI GGATC 7 cut(s) 56, 77, 92, 629, 1301, 1323, 1487
BspT104I TTCGAA 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 1646
BspTNI GGTCTC 1 cut(s) 199
BsrI ACTGG 5 cut(s) 572, 670, 1451, 1551, 1799
BssECI CCNNGG 9 cut(s) 66, 67, 559, 617, 1149, 1366, 1464, 1473, 1758
BssNI GRCGYC 1 cut(s) 1647
BssT1I CCWWGG 4 cut(s) 559, 617, 1149, 1758
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 894
BstACI GRCGYC 1 cut(s) 1647
BstAPI GCANNNNNTGC 1 cut(s) 860
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 6 cut(s) 471, 1103, 1401, 1508, 1622, 1694
BstDEI CTNAG 7 cut(s) 432, 606, 653, 1022, 1158, 1286, 1311
BstDSI CCRYGG 3 cut(s) 559, 1149, 1473
BstF5I GGATG 4 cut(s) 818, 1227, 1413, 1417
BstFNI CGCG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 1650
BstHHI GCGC 2 cut(s) 52, 1649
BstMAI GTCTC 3 cut(s) 199, 1148, 1156
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 4 cut(s) 475, 484, 523, 860
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 4 cut(s) 183, 786, 1510, 1624
BstSCI CCNGG 2 cut(s) 66, 1699
BstSFI CTRYAG 1 cut(s) 276
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 440, 1091
BstV2I GAAGAC 2 cut(s) 532, 1087
BstX2I RGATCY 6 cut(s) 61, 82, 97, 621, 1315, 1492
BstYI RGATCY 6 cut(s) 61, 82, 97, 621, 1315, 1492
Bsu36I CCTNAGG 1 cut(s) 1311
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 3 cut(s) 558, 1692, 1757
BtgI CCRYGG 3 cut(s) 559, 1149, 1473
BtsCI GGATG 4 cut(s) 818, 1227, 1413, 1417
BtsIMutI CAGTG 3 cut(s) 300, 1458, 1620
Cac8I GCNNGC 6 cut(s) 471, 1103, 1401, 1508, 1622, 1694
CaiI CAGNNNCTG 2 cut(s) 431, 613
CfoI GCGC 2 cut(s) 52, 1649
Csp6I GTAC 6 cut(s) 28, 361, 368, 739, 822, 1391
CviQI GTAC 6 cut(s) 28, 361, 368, 739, 822, 1391
DdeI CTNAG 7 cut(s) 432, 606, 653, 1022, 1158, 1286, 1311
DinI GGCGCC 1 cut(s) 1648
DrdI GACNNNNNNGTC 1 cut(s) 1144
DseDI GACNNNNNNGTC 1 cut(s) 1144
EaeI YGGCCR 1 cut(s) 1755
Eam1104I CTCTTC 1 cut(s) 894
EarI CTCTTC 1 cut(s) 894
Eco130I CCWWGG 4 cut(s) 559, 617, 1149, 1758
Eco24I GRGCYC 1 cut(s) 1472
Eco31I GGTCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 1376
Eco81I CCTNAGG 1 cut(s) 1311
EcoRI GAATTC 1 cut(s) 904
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 4 cut(s) 559, 617, 1149, 1758
EcoT38I GRGCYC 1 cut(s) 1472
EgeI GGCGCC 1 cut(s) 1648
EheI GGCGCC 1 cut(s) 1648
ErhI CCWWGG 4 cut(s) 559, 617, 1149, 1758
Esp3I CGTCTC 1 cut(s) 1156
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FauNDI CATATG 1 cut(s) 1832
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 429, 1080
FokI GGATG 4 cut(s) 825, 1234, 1420, 1424
FriOI GRGCYC 1 cut(s) 1472
Fsp4HI GCNGC 2 cut(s) 429, 1080
FspBI CTAG 4 cut(s) 470, 530, 602, 1837
GlaI GCGC 2 cut(s) 51, 1648
GluI GCNGC 2 cut(s) 429, 1080
GsaI CCCAGC 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 1650
HaeIII GGCC 3 cut(s) 558, 1692, 1757
HapII CCGG 2 cut(s) 224, 1701
HhaI GCGC 2 cut(s) 52, 1649
Hin1I GRCGYC 1 cut(s) 1647
Hin6I GCGC 2 cut(s) 50, 1647
HinP1I GCGC 2 cut(s) 50, 1647
HindIII AAGCTT 1 cut(s) 1397
HinfI GANTC 5 cut(s) 583, 941, 1039, 1156, 1727
HpaII CCGG 2 cut(s) 224, 1701
HphI GGTGA 1 cut(s) 908
Hpy166II GTNNAC 2 cut(s) 259, 370
Hpy188I TCNGA 9 cut(s) 18, 37, 388, 403, 656, 1122, 1161, 1356, 1822
Hpy188III TCNNGA 5 cut(s) 80, 101, 157, 1043, 1310
Hpy8I GTNNAC 2 cut(s) 259, 370
HpyAV CCTTC 6 cut(s) 412, 803, 1517, 1675, 1720, 1733
HpyCH4IV ACGT 3 cut(s) 591, 764, 1566
HpyCH4V TGCA 8 cut(s) 107, 254, 342, 713, 854, 1079, 1403, 1571
HpyF10VI GCNNNNNNNGC 4 cut(s) 475, 484, 523, 860
HpyF3I CTNAG 7 cut(s) 432, 606, 653, 1022, 1158, 1286, 1311
HpySE526I ACGT 3 cut(s) 591, 764, 1566
Hsp92I GRCGYC 1 cut(s) 1647
HspAI GCGC 2 cut(s) 50, 1647
KasI GGCGCC 1 cut(s) 1646
LmnI GCTCC 4 cut(s) 571, 728, 1168, 1475
Lsp1109I GCAGC 2 cut(s) 440, 1091
LweI GCATC 6 cut(s) 18, 94, 346, 407, 784, 1291
MaeI CTAG 4 cut(s) 470, 530, 602, 1837
MaeII ACGT 3 cut(s) 591, 764, 1566
MaeIII GTNAC 5 cut(s) 307, 839, 1436, 1562, 1669
MfeI CAATTG 2 cut(s) 1193, 1572
MflI RGATCY 6 cut(s) 61, 82, 97, 621, 1315, 1492
MhlI GDGCHC 1 cut(s) 1472
Mly113I GGCGCC 1 cut(s) 1647
MlyI GAGTC 2 cut(s) 577, 1150
MmeI TCCRAC 2 cut(s) 706, 1358
MroXI GAANNNNTTC 2 cut(s) 138, 1361
MseI TTAA 2 cut(s) 351, 690
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 2 cut(s) 224, 1701
MspR9I CCNGG 2 cut(s) 68, 1701
MunI CAATTG 2 cut(s) 1193, 1572
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 4 cut(s) 475, 484, 523, 860
NarI GGCGCC 1 cut(s) 1647
NciI CCSGG 1 cut(s) 1701
NcoI CCATGG 2 cut(s) 559, 1149
NdeI CATATG 1 cut(s) 1832
NheI GCTAGC 1 cut(s) 469
NlaIV GGNNCC 2 cut(s) 1471, 1648
NmeAIII GCCGAG 2 cut(s) 1347, 1489
NmuCI GTSAC 4 cut(s) 307, 839, 1436, 1562
NspI RCATGY 4 cut(s) 183, 786, 1510, 1624
NspV TTCGAA 1 cut(s) 416
PaeI GCATGC 2 cut(s) 1510, 1624
PasI CCCWGGG 1 cut(s) 67
PciI ACATGT 1 cut(s) 179
PdmI GAANNNNTTC 2 cut(s) 138, 1361
PfeI GAWTC 3 cut(s) 941, 1039, 1727
PkrI GCNGC 2 cut(s) 430, 1081
Ple19I CGATCG 1 cut(s) 296
PleI GAGTC 2 cut(s) 577, 1150
PluTI GGCGCC 1 cut(s) 1650
PpsI GAGTC 2 cut(s) 577, 1150
PscI ACATGT 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 1471, 1648
PsrI GAACNNNNNNTAC 2 cut(s) 1588, 1620
PstNI CAGNNNCTG 2 cut(s) 431, 613
PsuI RGATCY 6 cut(s) 61, 82, 97, 621, 1315, 1492
PvuI CGATCG 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 431
RgaI GCGATCGC 1 cut(s) 296
RsaI GTAC 6 cut(s) 29, 362, 369, 740, 823, 1392
RsaNI GTAC 6 cut(s) 28, 361, 368, 739, 822, 1391
SaqAI TTAA 2 cut(s) 351, 690
SatI GCNGC 2 cut(s) 429, 1080
SchI GAGTC 2 cut(s) 577, 1150
ScrFI CCNGG 2 cut(s) 68, 1701
SduI GDGCHC 1 cut(s) 1472
SfaAI GCGATCGC 1 cut(s) 296
SfaNI GCATC 6 cut(s) 18, 94, 346, 407, 784, 1291
SfcI CTRYAG 1 cut(s) 276
SfoI GGCGCC 1 cut(s) 1648
SfuI TTCGAA 1 cut(s) 416
SgfI GCGATCGC 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 1765
SmoI CTYRAG 1 cut(s) 1765
SphI GCATGC 2 cut(s) 1510, 1624
SsiI CCGC 2 cut(s) 56, 191
SspDI GGCGCC 1 cut(s) 1646
SspMI CTAG 4 cut(s) 470, 530, 602, 1837
StyD4I CCNGG 2 cut(s) 66, 1699
StyI CCWWGG 4 cut(s) 559, 617, 1149, 1758
TaiI ACGT 3 cut(s) 594, 767, 1569
TaqI TCGA 4 cut(s) 79, 416, 628, 1662
TatI WGTACW 2 cut(s) 27, 367
TfiI GAWTC 3 cut(s) 941, 1039, 1727
Tru1I TTAA 2 cut(s) 351, 690
Tru9I TTAA 2 cut(s) 351, 690
TscAI CASTG 3 cut(s) 307, 1458, 1620
TseFI GTSAC 4 cut(s) 307, 839, 1436, 1562
TseI GCWGC 2 cut(s) 428, 1079
Tsp45I GTSAC 4 cut(s) 307, 839, 1436, 1562
TspDTI ATGAA 7 cut(s) 141, 249, 405, 1265, 1280, 1388, 1428
TspGWI ACGGA 1 cut(s) 1462
TspRI CASTG 3 cut(s) 307, 1458, 1620
XapI RAATTY 3 cut(s) 410, 630, 904
XceI RCATGY 4 cut(s) 183, 786, 1510, 1624
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 2 cut(s) 138, 1361
XspI CTAG 4 cut(s) 470, 530, 602, 1837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.