Rorug01G0427800

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000119
Physical Location & Seq
Forward (+)
52723703 .. 52726341
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0427800.1

Sequence Viewer

Length: 1437 bp
ATGTCGGATCAACAACCACTTCAAGAAGCTTCATCCGGTTCTTCGAACCTCCACGCTTCAGCGGCGCCCACTACTACTCAAGACTCCCTGACTCCGCTGCGGTCCCATCCCAATCGCGACGGCGGTGCCCATCGCTTGGTCAGCAAGGTTGAGAGATTAGAGTTGGATAGGTTCATACCAAACCGTTCAACGACGAACTGGGACTATGCAAGCTCGGTGCTGACCGGAAGACGATCGGAGAGAAGTTTTGGAGAGATTAAACCAGGGATGTCCGAACTTCACGTCATGTATACTCTGAAACTTAAGAAAGAATTAGGTATTGACACGTCGAGAATTTTCTACTACCGGAACAACCGAAAGCCGCCGGAAGAGGTGAACTATGCACCTAGAAATTCGTGGAGTGTGATTGAAGGGCAAAAAATTACTGCGCCTGGGCTTGTGGCTGATCAGAGCTACTTGAATCTCATGGACTGGGGAATGCGCAATGTGATCGCAGTAGGTCTGAGGGAGAGAGTTTGTTTCTATGATACTGAGGCAGGCAAGAAATCGGTCGGATTTAATTATGGTGATGAGCTCGTTAGCAGCGTCAGTTGGTGTCCTGAGGGTTTAGATGCGCTTGCCATTGGTTTGAAGAATTCCCTAGTACATTTGTTGGATCCAAACACTAATCAAGCGATAAGAACATTTGATAGCTGGGGAGTTGGCTCATTGGCATGGAATGGCCGAATTCTAACAACTGGAAGCAGGGATGGTCATATAGTTAACTATGATGTGAGAGTTGGAACCCAAGTTGCTCGGTTACGGAAATCACATCGACGAGCGATTTGTGGGCTGAAATGGTCGGCTTCCGGTCAGCTATTAGCCAGTGGGGGGTCAGATAATGTAGTTCATGTATGGGACGCCCGGTCTATGCCAACGAGGTGGCTTCACAAGCTTGAAGACCATAATGCCGCTGTACGAGCCGTAGCTTGGTGTCCTTTGAAGCGCCATTTACTAGCCTCTGGCGGAGGTCAGGGTGACCATTACATAAGGTTGTGGGACGCAAGCTCTGGCACTCCACACGAGAACGCAGTCGACACAGGCTCGGAAGTGTGCGGCCTATTATGGAGCAAACACTATCAAGACATACTCTTCAGCTCGCATGGCTTTGGTGTCTCCGAATCAGTACCCGATAACAGGCTAATTCTTTGGAGGTCACCGGTGTTGTTCAAGCTTGATGAGATCGACCTGCAATACGACCACCCCCCGGCTTTGGATCTGAGACCTAAGCCTTATTTTTTCTCGACTCAGAGCCCCGATGGTTGTGAGGTCGCGTTGGCCGGAAACGATCAAATAGTGAGGTTTTATGATGTTTTTGCAGCACCTCCACCACCAGAACCAGCGGCGAAACCAGCCTTTTCAACCTATAACCGCCCAAATCACTACACCATTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

478

Amino Acids

53.26

Weight (kDa)

8.14

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 143 - 449 6.6e-81 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 151 - 346 7e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st PF25171 162 - 299 2e-11 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 163 - 268 3.5e-07 WDR3 first beta-propeller domain
Beta-prop_WDR19_1st PF23389 163 - 301 5.8e-06 WDR19 first beta-propeller
Beta-prop_THOC3 PF25174 166 - 304 3.7e-15 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 191 - 334 2.6e-08 Aladin seven-bladed propeller
Beta-prop_WDR5 PF25175 192 - 364 3.9e-19 WDR5 beta-propeller domain
Beta-prop_RIG_2nd PF23775 235 - 366 7e-06 RIG second beta-propeller
Beta-prop_TEP1_2nd PF25047 236 - 334 9.6e-08 TEP-1 second beta-propeller
Beta-prop_EML_2 PF23414 238 - 356 3.2e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 238 - 330 5.8e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 240 - 349 7.7e-06 WDR3 second beta-propeller domain
WDR55 PF24796 240 - 376 5e-09 WDR55
Beta-prop_WDR3_1st PF25173 240 - 376 1.3e-18 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 241 - 355 9.2e-13 Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 250 - 336 4.1e-06 WDR90/POC16, second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 266 - 350 1.3e-07 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 269 - 300 2e-06 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 269 - 366 9.4e-06 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 271 - 380 2e-19 THOC3 beta-propeller domain
Beta-prop_EML PF23409 282 - 378 1.5e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 282 - 381 3.1e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 1236
AccB1I GGYRCC 2 cut(s) 64, 125
AccB7I CCANNNNNTGG 1 cut(s) 136
AccI GTMKAC 2 cut(s) 290, 1074
AccII CGCG 2 cut(s) 117, 1313
AclWI GGATC 4 cut(s) 15, 650, 663, 1263
AcoI YGGCCR 2 cut(s) 721, 1317
AcsI RAATTY 4 cut(s) 333, 391, 634, 726
AcuI CTGAAG 2 cut(s) 42, 1117
AcyI GRCGYC 2 cut(s) 65, 900
AfaI GTAC 3 cut(s) 645, 957, 1167
AfiI CCNNNNNNNGG 6 cut(s) 136, 870, 969, 1176, 1246, 1252
AflII CTTAAG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 324
AgeI ACCGGT 1 cut(s) 1198
AgsI TTSAA 9 cut(s) 23, 189, 410, 460, 631, 938, 982, 1210, 1401
AhdI GACNNNNNGTC 1 cut(s) 904
AjiI CACGTC 2 cut(s) 283, 327
AjnI CCWGG 2 cut(s) 262, 430
Alw21I GWGCWC 1 cut(s) 576
Alw26I GTCTC 2 cut(s) 1159, 1255
AlwI GGATC 4 cut(s) 15, 650, 663, 1263
AoxI GGCC 3 cut(s) 721, 1096, 1317
ApeKI GCWGC 3 cut(s) 97, 582, 1358
ApoI RAATTY 4 cut(s) 333, 391, 634, 726
ArsI GACNNNNNNTTYG 4 cut(s) 267, 299, 807, 839
AsiGI ACCGGT 1 cut(s) 1198
AspLEI GCGC 5 cut(s) 67, 430, 483, 616, 987
AspS9I GGNCC 1 cut(s) 102
AsuC2I CCSGG 2 cut(s) 904, 1247
AsuHPI GGTGA 4 cut(s) 385, 578, 1028, 1188
AsuII TTCGAA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 102
AxyI CCTNAGG 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 130
BamHI GGATCC 1 cut(s) 655
BanI GGYRCC 2 cut(s) 64, 125
BanII GRGCYC 2 cut(s) 576, 1295
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 2 cut(s) 235, 945
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 3 cut(s) 84, 594, 1370
BccI CCATC 4 cut(s) 114, 138, 743, 1292
BceAI ACGGC 2 cut(s) 136, 947
BcgI CGANNNNNNTGC 4 cut(s) 107, 141, 472, 506
BciT130I CCWGG 2 cut(s) 264, 432
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 2 cut(s) 904, 1247
BcoDI GTCTC 2 cut(s) 1159, 1255
BfaI CTAG 3 cut(s) 387, 641, 995
BfoI RGCGCY 2 cut(s) 68, 988
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 1236
BisI GCNGC 8 cut(s) 63, 98, 362, 583, 951, 1096, 1359, 1383
BlsI GCNGC 8 cut(s) 64, 99, 363, 584, 952, 1097, 1360, 1384
Bme1390I CCNGG 4 cut(s) 264, 432, 904, 1247
Bme18I GGWCC 1 cut(s) 102
BmeRI GACNNNNNGTC 1 cut(s) 904
BmgBI CACGTC 2 cut(s) 283, 327
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 5 cut(s) 66, 104, 127, 657, 784
BmrFI CCNGG 4 cut(s) 264, 432, 904, 1247
BmrI ACTGGG 2 cut(s) 208, 481
BmsI GCATC 1 cut(s) 601
BmuI ACTGGG 2 cut(s) 208, 481
BpiI GAAGAC 2 cut(s) 235, 945
Bpu10I CCTNAGC 1 cut(s) 1266
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 904, 1247
BsaHI GRCGYC 2 cut(s) 65, 900
BsaI GGTCTC 1 cut(s) 1255
BsaJI CCNNGG 3 cut(s) 263, 431, 1245
BsaWI WCCGGW 5 cut(s) 35, 224, 345, 848, 1198
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 870, 969, 1176, 1246, 1252
Bse118I RCCGGY 1 cut(s) 1198
Bse1I ACTGG 4 cut(s) 203, 476, 742, 864
Bse21I CCTNAGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 490
BseBI CCWGG 2 cut(s) 264, 432
BseDI CCNNGG 3 cut(s) 263, 431, 1245
BseGI GGATG 4 cut(s) 32, 106, 273, 754
BseLI CCNNNNNNNGG 6 cut(s) 136, 870, 969, 1176, 1246, 1252
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 5 cut(s) 494, 522, 591, 1250, 1301
BseNI ACTGG 4 cut(s) 203, 476, 742, 864
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 3 cut(s) 84, 594, 1370
BseYI CCCAGC 1 cut(s) 693
Bsh1236I CGCG 2 cut(s) 117, 1313
Bsh1285I CGRYCG 2 cut(s) 236, 552
BshFI GGCC 3 cut(s) 723, 1098, 1319
BshNI GGYRCC 2 cut(s) 64, 125
BshTI ACCGGT 1 cut(s) 1198
BsiEI CGRYCG 2 cut(s) 236, 552
BsiHKAI GWGCWC 1 cut(s) 576
BsiSI CCGG 9 cut(s) 36, 225, 346, 365, 849, 904, 1199, 1247, 1320
BslFI GGGAC 4 cut(s) 88, 215, 911, 1052
BslI CCNNNNNNNGG 6 cut(s) 136, 870, 969, 1176, 1246, 1252
BsmAI GTCTC 2 cut(s) 1159, 1255
BsmFI GGGAC 4 cut(s) 88, 215, 911, 1052
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 3 cut(s) 723, 1098, 1319
Bso31I GGTCTC 1 cut(s) 1255
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 130, 576, 1295
Bsp143I GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
Bsp68I TCGCGA 1 cut(s) 117
BspANI GGCC 3 cut(s) 723, 1098, 1319
BspCNI CTCAG 5 cut(s) 495, 523, 592, 1251, 1300
BspFNI CGCG 2 cut(s) 117, 1313
BspLI GGNNCC 5 cut(s) 66, 104, 127, 657, 784
BspMI ACCTGC 1 cut(s) 1236
BspPI GGATC 4 cut(s) 15, 650, 663, 1263
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 2 cut(s) 64, 125
BspTI CTTAAG 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 1255
BsrDI GCAATG 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 1198
BsrI ACTGG 4 cut(s) 203, 476, 742, 864
BssAI RCCGGY 1 cut(s) 1198
BssECI CCNNGG 3 cut(s) 263, 431, 1245
BssMI GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
BssNAI GTATAC 1 cut(s) 291
BssNI GRCGYC 2 cut(s) 65, 900
BssSI CACGAG 1 cut(s) 1061
Bst1107I GTATAC 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 2 cut(s) 264, 432
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 363, 1136
BstACI GRCGYC 2 cut(s) 65, 900
BstAFI CTTAAG 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 5 cut(s) 211, 538, 618, 1045, 1139
BstDEI CTNAG 6 cut(s) 503, 531, 600, 1259, 1266, 1287
BstEII GGTNACC 2 cut(s) 1016, 1194
BstF5I GGATG 4 cut(s) 32, 106, 273, 754
BstFNI CGCG 2 cut(s) 117, 1313
BstH2I RGCGCY 2 cut(s) 68, 988
BstHHI GCGC 5 cut(s) 67, 430, 483, 616, 987
BstKTI GATC 8 cut(s) 10, 236, 448, 492, 658, 1224, 1258, 1330
BstMAI GTCTC 2 cut(s) 1159, 1255
BstMBI GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
BstMCI CGRYCG 2 cut(s) 236, 552
BstMWI GCNNNNNNNGC 6 cut(s) 62, 141, 931, 959, 1143, 1391
BstNI CCWGG 2 cut(s) 264, 432
BstPI GGTNACC 2 cut(s) 1016, 1194
BstSCI CCNGG 4 cut(s) 262, 430, 902, 1245
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 2 cut(s) 117, 1313
BstV1I GCAGC 3 cut(s) 84, 594, 1370
BstV2I GAAGAC 2 cut(s) 235, 945
BstX2I RGATCY 2 cut(s) 655, 1255
BstXI CCANNNNNNTGG 1 cut(s) 921
BstYI RGATCY 2 cut(s) 655, 1255
BstZ17I GTATAC 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 3 cut(s) 723, 1098, 1319
BtgZI GCGATG 1 cut(s) 116
BtrI CACGTC 2 cut(s) 283, 327
BtsCI GGATG 4 cut(s) 32, 106, 273, 754
BtsIMutI CAGTG 1 cut(s) 871
BtuMI TCGCGA 1 cut(s) 117
BveI ACCTGC 1 cut(s) 1236
Cac8I GCNNGC 5 cut(s) 211, 538, 618, 1045, 1139
CfoI GCGC 5 cut(s) 67, 430, 483, 616, 987
Cfr10I RCCGGY 1 cut(s) 1198
Cfr13I GGNCC 1 cut(s) 102
CseI GACGC 3 cut(s) 574, 908, 1049
Csp6I GTAC 3 cut(s) 644, 956, 1166
CspAI ACCGGT 1 cut(s) 1198
CviAII CATG 5 cut(s) 286, 466, 714, 890, 1142
CviQI GTAC 3 cut(s) 644, 956, 1166
DdeI CTNAG 6 cut(s) 503, 531, 600, 1259, 1266, 1287
DinI GGCGCC 1 cut(s) 66
DpnI GATC 8 cut(s) 9, 235, 447, 491, 657, 1223, 1257, 1329
DpnII GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
DriI GACNNNNNGTC 1 cut(s) 904
EaeI YGGCCR 2 cut(s) 721, 1317
Eam1104I CTCTTC 2 cut(s) 363, 1136
Eam1105I GACNNNNNGTC 1 cut(s) 904
EarI CTCTTC 2 cut(s) 363, 1136
EciI GGCGGA 1 cut(s) 1020
Ecl136II GAGCTC 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 576, 1295
Eco31I GGTCTC 1 cut(s) 1255
Eco47I GGWCC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 574
Eco57I CTGAAG 2 cut(s) 42, 1117
Eco81I CCTNAGG 1 cut(s) 600
Eco91I GGTNACC 2 cut(s) 1016, 1194
EcoICRI GAGCTC 1 cut(s) 574
EcoO65I GGTNACC 2 cut(s) 1016, 1194
EcoRI GAATTC 2 cut(s) 634, 726
EcoRII CCWGG 2 cut(s) 262, 430
EcoT38I GRGCYC 2 cut(s) 576, 1295
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
FaeI CATG 5 cut(s) 289, 469, 717, 893, 1145
FaqI GGGAC 4 cut(s) 88, 215, 911, 1052
FatI CATG 5 cut(s) 285, 465, 713, 889, 1141
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 2 cut(s) 290, 1074
Fnu4HI GCNGC 8 cut(s) 63, 98, 362, 583, 951, 1096, 1359, 1383
FokI GGATG 4 cut(s) 19, 93, 280, 761
FriOI GRGCYC 2 cut(s) 576, 1295
Fsp4HI GCNGC 8 cut(s) 63, 98, 362, 583, 951, 1096, 1359, 1383
FspBI CTAG 3 cut(s) 387, 641, 995
FspI TGCGCA 1 cut(s) 482
GlaI GCGC 5 cut(s) 66, 429, 482, 615, 986
GluI GCNGC 8 cut(s) 63, 98, 362, 583, 951, 1096, 1359, 1383
GsaI CCCAGC 1 cut(s) 697
HaeII RGCGCY 2 cut(s) 68, 988
HaeIII GGCC 3 cut(s) 723, 1098, 1319
HapII CCGG 9 cut(s) 36, 225, 346, 365, 849, 904, 1199, 1247, 1320
HgaI GACGC 3 cut(s) 574, 908, 1049
HhaI GCGC 5 cut(s) 67, 430, 483, 616, 987
Hin1I GRCGYC 2 cut(s) 65, 900
Hin1II CATG 5 cut(s) 289, 469, 717, 893, 1145
Hin6I GCGC 5 cut(s) 65, 428, 481, 614, 985
HinP1I GCGC 5 cut(s) 65, 428, 481, 614, 985
HincII GTYRAC 2 cut(s) 763, 1075
HindII GTYRAC 2 cut(s) 763, 1075
HindIII AAGCTT 3 cut(s) 27, 932, 1211
HinfI GANTC 5 cut(s) 83, 91, 460, 1160, 1285
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 9 cut(s) 36, 225, 346, 365, 849, 904, 1199, 1247, 1320
HphI GGTGA 4 cut(s) 385, 578, 1028, 1188
Hpy166II GTNNAC 4 cut(s) 291, 376, 763, 1075
Hpy188III TCNNGA 7 cut(s) 23, 80, 116, 330, 599, 1121, 1282
Hpy8I GTNNAC 4 cut(s) 291, 376, 763, 1075
Hpy99I CGWCG 4 cut(s) 122, 196, 331, 819
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 2 cut(s) 282, 326
HpyCH4V TGCA 4 cut(s) 209, 383, 1231, 1358
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 141, 931, 959, 1143, 1391
HpyF3I CTNAG 6 cut(s) 503, 531, 600, 1259, 1266, 1287
HpySE526I ACGT 2 cut(s) 282, 326
Hsp92I GRCGYC 2 cut(s) 65, 900
Hsp92II CATG 5 cut(s) 289, 469, 717, 893, 1145
HspAI GCGC 5 cut(s) 65, 428, 481, 614, 985
KasI GGCGCC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 763
Kzo9I GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
LmnI GCTCC 1 cut(s) 1107
Lsp1109I GCAGC 3 cut(s) 84, 594, 1370
LweI GCATC 1 cut(s) 601
MaeI CTAG 3 cut(s) 387, 641, 995
MaeII ACGT 2 cut(s) 282, 326
MaeIII GTNAC 3 cut(s) 798, 1016, 1194
MalI GATC 8 cut(s) 9, 235, 447, 491, 657, 1223, 1257, 1329
MboI GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
MboII GAAGA 6 cut(s) 33, 240, 380, 643, 950, 1123
MflI RGATCY 2 cut(s) 655, 1255
MhlI GDGCHC 3 cut(s) 130, 576, 1295
MluCI AATT 8 cut(s) 311, 333, 391, 420, 559, 634, 726, 1182
Mly113I GGCGCC 1 cut(s) 65
MlyI GAGTC 3 cut(s) 77, 85, 1279
MmeI TCCRAC 4 cut(s) 144, 532, 633, 760
MseI TTAA 4 cut(s) 258, 303, 558, 762
MslI CAYNNNNRTG 1 cut(s) 712
MspA1I CMGCKG 4 cut(s) 62, 97, 953, 1382
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 9 cut(s) 36, 225, 346, 365, 849, 904, 1199, 1247, 1320
MspR9I CCNGG 4 cut(s) 264, 432, 904, 1247
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 2 cut(s) 264, 432
MvnI CGCG 2 cut(s) 117, 1313
MwoI GCNNNNNNNGC 6 cut(s) 62, 141, 931, 959, 1143, 1391
NarI GGCGCC 1 cut(s) 65
NciI CCSGG 2 cut(s) 904, 1247
NdeII GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
NlaIII CATG 5 cut(s) 289, 469, 717, 893, 1145
NlaIV GGNNCC 5 cut(s) 66, 104, 127, 657, 784
NmuCI GTSAC 2 cut(s) 1016, 1194
NruI TCGCGA 1 cut(s) 117
NsbI TGCGCA 1 cut(s) 482
NspV TTCGAA 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 460, 1160
PflMI CCANNNNNTGG 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 1198
PkrI GCNGC 8 cut(s) 64, 99, 363, 584, 952, 1097, 1360, 1384
Ple19I CGATCG 1 cut(s) 236
PleI GAGTC 3 cut(s) 77, 85, 1279
PluTI GGCGCC 1 cut(s) 68
PpsI GAGTC 3 cut(s) 77, 85, 1279
Psp124BI GAGCTC 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 262, 430
PspEI GGTNACC 2 cut(s) 1016, 1194
PspFI CCCAGC 1 cut(s) 693
PspGI CCWGG 2 cut(s) 262, 430
PspN4I GGNNCC 5 cut(s) 66, 104, 127, 657, 784
PspPI GGNCC 1 cut(s) 102
PsuI RGATCY 2 cut(s) 655, 1255
PvuI CGATCG 1 cut(s) 236
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 3 cut(s) 645, 957, 1167
RsaNI GTAC 3 cut(s) 644, 956, 1166
RseI CAYNNNNRTG 1 cut(s) 712
SacI GAGCTC 1 cut(s) 576
SalI GTCGAC 1 cut(s) 1073
SaqAI TTAA 4 cut(s) 258, 303, 558, 762
SatI GCNGC 8 cut(s) 63, 98, 362, 583, 951, 1096, 1359, 1383
Sau3AI GATC 8 cut(s) 7, 233, 445, 489, 655, 1221, 1255, 1327
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 3 cut(s) 77, 85, 1279
ScrFI CCNGG 4 cut(s) 264, 432, 904, 1247
SduI GDGCHC 3 cut(s) 130, 576, 1295
SfaNI GCATC 1 cut(s) 601
SfoI GGCGCC 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 1198
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 712
SmlI CTYRAG 2 cut(s) 78, 302
SmoI CTYRAG 2 cut(s) 78, 302
Sse9I AATT 8 cut(s) 311, 333, 391, 420, 559, 634, 726, 1182
SspDI GGCGCC 1 cut(s) 64
SspMI CTAG 3 cut(s) 387, 641, 995
SstI GAGCTC 1 cut(s) 576
StyD4I CCNGG 4 cut(s) 262, 430, 902, 1245
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 2 cut(s) 285, 329
TaqI TCGA 6 cut(s) 44, 329, 814, 1074, 1224, 1283
TaqII GACCGA 1 cut(s) 538
TasI AATT 8 cut(s) 311, 333, 391, 420, 559, 634, 726, 1182
TatI WGTACW 1 cut(s) 643
TauI GCSGC 5 cut(s) 65, 364, 953, 1098, 1385
TfiI GAWTC 2 cut(s) 460, 1160
Tru1I TTAA 4 cut(s) 258, 303, 558, 762
Tru9I TTAA 4 cut(s) 258, 303, 558, 762
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 2 cut(s) 1016, 1194
TseI GCWGC 3 cut(s) 97, 582, 1358
Tsp45I GTSAC 2 cut(s) 1016, 1194
TspDTI ATGAA 3 cut(s) 21, 163, 878
TspGWI ACGGA 1 cut(s) 817
TspRI CASTG 1 cut(s) 871
Van91I CCANNNNNTGG 1 cut(s) 136
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 4 cut(s) 333, 391, 634, 726
XmiI GTMKAC 2 cut(s) 290, 1074
XspI CTAG 3 cut(s) 387, 641, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.