Rroxscaffold_4G00325390

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000119
Physical Location & Seq
Reverse (-)
57084597 .. 57087329
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325390.1

Sequence Viewer

Length: 1494 bp
ATGGCGGCCTACAAAGTACACATAAAAGGAAAGTCGGAATTGGAATTGGATTGGTCATATTCGAAGATATCAATGGGTGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCATGGCGCTCCACGCTAACTGATATTTTGGCTGTTCTTCCCATGCCACAATTTCTAGTGGTCTTTGGTTTCTTCAAAATGAGAGGCCGTGGATATTTGGAACGCAAGAAGATTCTCAATGTCTTTCTCCTGGGTCAATATTTGCCAAGGATTTATCGAATTTACTTATCATCTAAGGAACTTAGACAAACTACAGGAATTTGGGTTAAGGCTCTGTTCAACTTTTTTCTGTATATACTAGCCAGTCATGTCATTGGAGCTTTTTGGTACTTCTTTTCTATTCAACGTGAGACATCATGCTGGCATCATGCTTGTATAAAGAATAGTACAAATGTCGAAGGATGTATGAGTACTTTCTACTGTGATGGTCGCAATACTACCGCTAGAAATGTCACTTTTTTCAATCAGTTTTGCCAAATCAATGTTGAAGACAATGCTACAGCGCTTTTTGATTTTGGAATATTTCTTAATTCTCTCAAGAATGGTAACACGGGCCATATACATTTTGCAACAAAGTTGTCCTACTCATTTTGGTGGGGATTGCGGAATCTGAGCGAGCTTCTTGCTGCAGATGGGGGACATGATGAGAAGAGAATGTTACATGCTTATGCACACAAACTCATAGACACCTTTATGTCCATGGAAGCCCAAAGATGGGAGGTTATAAGAAACAAGATGCTTTTGAAAGAGAAAGATATAGAAAGATGGATGGACAGGAATGAACTGCCCGATGATATGAAGAAAGAAATCAAGAAAAACATAACGCAGAAATTGGAAGAAAACAAAGATTCAGATCTGGAGAACCTTTTCAATATTCTTCCCTGGTACACCAAAAAGTCCCTAAAGCGAGTTCTCTGCATGGACATACTAAAGAAAGTACCTAAACTGGAAAGAATGGATGAGAAAGTGTTGAAAATGATCTGCGACTATCTAAAGCCAGAGATGTATGCTGAGGGCACCATGGTTTTTCACATGGGAGAACCGCTTGATAGCATGCTATTCATTACAGAAGGCACTATACTGACCTACAAAACTACCGGTACTGATAATCATGCTCATGAAAACGCAAAATTGGGTCCTCCTGCATCCCCATCAATCGGCACCCTTGAGAAAGGCTACTTCTATGGCGAACAACTGCTGCACTGGGCATCACAAAAAAACGTGAATTTAACGGAGGTCCCTAGCTCTGCCGACAATGTGAAGTGCCATACAAAAGTAGAAGGCTTTGTTCTCATGGCCAAGGACTTAAGAACTGTAGTCTCCAAATGTGAGTACTGGTGGAAATTAAGCATTAGTAATCCTAGAGTGGGTGGTACTCGGACCACACCAAATGCTAGGAATGTGCAGCAGAAACCTGGAGTGGATCCCCAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

497

Amino Acids

57.54

Weight (kDa)

9.1

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AccB1I GGYRCC 2 cut(s) 1073, 1217
AciI CCGC 4 cut(s) 5, 498, 661, 1100
AclWI GGATC 2 cut(s) 1475, 1488
AcoI YGGCCR 1 cut(s) 1353
AcsI RAATTY 3 cut(s) 276, 315, 1282
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 4 cut(s) 771, 772, 1214, 1424
AflII CTTAAG 1 cut(s) 1363
AgeI ACCGGT 1 cut(s) 1154
AgsI TTSAA 8 cut(s) 193, 337, 401, 520, 545, 802, 928, 1030
AjnI CCWGG 3 cut(s) 246, 938, 1471
AluBI AGCT 4 cut(s) 115, 377, 676, 1302
AluI AGCT 4 cut(s) 115, 377, 676, 1302
Alw26I GTCTC 2 cut(s) 401, 1381
AlwI GGATC 2 cut(s) 1475, 1488
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 4 cut(s) 6, 202, 610, 1353
ApeKI GCWGC 3 cut(s) 683, 1255, 1462
ApoI RAATTY 3 cut(s) 276, 315, 1282
AsiGI ACCGGT 1 cut(s) 1154
Asp700I GAANNNNTTC 1 cut(s) 923
AspLEI GCGC 2 cut(s) 126, 562
AspS9I GGNCC 4 cut(s) 610, 1193, 1294, 1437
AsuHPI GGTGA 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 115
AvaII GGWCC 3 cut(s) 1193, 1294, 1437
BaeGI GKGCMC 1 cut(s) 1076
BalI TGGCCA 1 cut(s) 1355
BamHI GGATCC 1 cut(s) 1480
BanI GGYRCC 2 cut(s) 1073, 1217
BarI GAAGNNNNNNTAC 2 cut(s) 1119, 1151
BbsI GAAGAC 1 cut(s) 552
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 3 cut(s) 670, 1242, 1474
BccI CCATC 6 cut(s) 476, 683, 765, 816, 820, 1216
BceAI ACGGC 1 cut(s) 189
BcgI CGANNNNNNTGC 4 cut(s) 662, 696, 954, 988
BciT130I CCWGG 3 cut(s) 248, 940, 1473
BcoDI GTCTC 2 cut(s) 401, 1381
BfaI CTAG 8 cut(s) 116, 173, 356, 501, 1299, 1419, 1452, 1492
BfmI CTRYAG 4 cut(s) 309, 555, 684, 1371
BfoI RGCGCY 2 cut(s) 127, 563
BfrI CTTAAG 1 cut(s) 1363
BglII AGATCT 1 cut(s) 910
BisI GCNGC 4 cut(s) 6, 684, 1256, 1463
BlsI GCNGC 4 cut(s) 7, 685, 1257, 1464
BmcAI AGTACT 3 cut(s) 469, 1391, 1490
Bme1390I CCNGG 3 cut(s) 248, 940, 1473
Bme18I GGWCC 3 cut(s) 1193, 1294, 1437
BmgT120I GGNCC 4 cut(s) 610, 1193, 1294, 1437
BmiI GGNNCC 5 cut(s) 1075, 1194, 1219, 1296, 1482
BmrFI CCNGG 3 cut(s) 248, 940, 1473
BmrI ACTGGG 2 cut(s) 1270, 1480
BmsI GCATC 4 cut(s) 430, 783, 1211, 1274
BmtI GCTAGC 1 cut(s) 119
BmuI ACTGGG 2 cut(s) 1270, 1480
BpiI GAAGAC 1 cut(s) 552
BpmI CTGGAG 2 cut(s) 935, 1494
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 578, 1244
BsaBI GATNNNNATC 1 cut(s) 909
BsaJI CCNNGG 7 cut(s) 205, 247, 263, 756, 938, 1077, 1356
BsaWI WCCGGW 1 cut(s) 1154
Bsc4I CCNNNNNNNGG 4 cut(s) 771, 772, 1214, 1424
Bse118I RCCGGY 1 cut(s) 1154
Bse1I ACTGG 5 cut(s) 360, 1008, 1265, 1397, 1486
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 3 cut(s) 248, 940, 1473
BseDI CCNNGG 7 cut(s) 205, 247, 263, 756, 938, 1077, 1356
BseGI GGATG 4 cut(s) 464, 831, 1021, 1202
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 4 cut(s) 771, 772, 1214, 1424
BseMII CTCAG 2 cut(s) 659, 1059
BseNI ACTGG 5 cut(s) 360, 1008, 1265, 1397, 1486
BseSI GKGCMC 1 cut(s) 1076
BseXI GCAGC 3 cut(s) 670, 1242, 1474
BseYI CCCAGC 1 cut(s) 107
BsgI GTGCAG 2 cut(s) 1241, 1481
BshFI GGCC 4 cut(s) 8, 204, 612, 1355
BshNI GGYRCC 2 cut(s) 1073, 1217
BshTI ACCGGT 1 cut(s) 1154
BsiSI CCGG 1 cut(s) 1155
BslFI GGGAC 3 cut(s) 708, 940, 1280
BslI CCNNNNNNNGG 4 cut(s) 771, 772, 1214, 1424
BsmAI GTCTC 2 cut(s) 401, 1381
BsmFI GGGAC 3 cut(s) 708, 940, 1280
BsnI GGCC 4 cut(s) 8, 204, 612, 1355
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 1076
Bsp143I GATC 3 cut(s) 910, 1035, 1480
Bsp19I CCATGG 2 cut(s) 756, 1077
BspACI CCGC 4 cut(s) 5, 498, 661, 1100
BspANI GGCC 4 cut(s) 8, 204, 612, 1355
BspCNI CTCAG 2 cut(s) 660, 1060
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 5 cut(s) 1075, 1194, 1219, 1296, 1482
BspMAI CTGCAG 1 cut(s) 688
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 2 cut(s) 1475, 1488
BspT104I TTCGAA 1 cut(s) 62
BspT107I GGYRCC 2 cut(s) 1073, 1217
BspTI CTTAAG 1 cut(s) 1363
BsrFI RCCGGY 1 cut(s) 1154
BsrI ACTGG 5 cut(s) 360, 1008, 1265, 1397, 1486
BssAI RCCGGY 1 cut(s) 1154
BssECI CCNNGG 7 cut(s) 205, 247, 263, 756, 938, 1077, 1356
BssMI GATC 3 cut(s) 910, 1035, 1480
BssT1I CCWWGG 4 cut(s) 263, 756, 1077, 1356
Bst2UI CCWGG 3 cut(s) 248, 940, 1473
Bst4CI ACNGT 2 cut(s) 479, 1372
Bst6I CTCTTC 1 cut(s) 701
BstAFI CTTAAG 1 cut(s) 1363
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 4 cut(s) 117, 419, 674, 1112
BstDEI CTNAG 4 cut(s) 291, 299, 668, 1068
BstDSI CCRYGG 3 cut(s) 205, 756, 1077
BstF5I GGATG 4 cut(s) 464, 831, 1021, 1202
BstH2I RGCGCY 2 cut(s) 127, 563
BstHHI GCGC 2 cut(s) 126, 562
BstKTI GATC 3 cut(s) 913, 1038, 1483
BstMAI GTCTC 2 cut(s) 401, 1381
BstMBI GATC 3 cut(s) 910, 1035, 1480
BstMWI GCNNNNNNNGC 2 cut(s) 121, 130
BstNI CCWGG 3 cut(s) 248, 940, 1473
BstNSI RCATGY 2 cut(s) 722, 1114
BstSCI CCNGG 3 cut(s) 246, 938, 1471
BstSFI CTRYAG 4 cut(s) 309, 555, 684, 1371
BstSLI GKGCMC 1 cut(s) 1076
BstV1I GCAGC 3 cut(s) 670, 1242, 1474
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 2 cut(s) 910, 1480
BstYI RGATCY 2 cut(s) 910, 1480
BsuRI GGCC 4 cut(s) 8, 204, 612, 1355
BtgI CCRYGG 3 cut(s) 205, 756, 1077
BtsCI GGATG 4 cut(s) 464, 831, 1021, 1202
BtsIMutI CAGTG 1 cut(s) 1258
Cac8I GCNNGC 4 cut(s) 117, 419, 674, 1112
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 2 cut(s) 126, 562
Cfr10I RCCGGY 1 cut(s) 1154
Cfr13I GGNCC 4 cut(s) 610, 1193, 1294, 1437
CspAI ACCGGT 1 cut(s) 1154
DdeI CTNAG 4 cut(s) 291, 299, 668, 1068
DpnI GATC 3 cut(s) 912, 1037, 1482
DpnII GATC 3 cut(s) 910, 1035, 1480
EaeI YGGCCR 1 cut(s) 1353
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 4 cut(s) 263, 756, 1077, 1356
Eco32I GATATC 1 cut(s) 69
Eco47I GGWCC 3 cut(s) 1193, 1294, 1437
Eco47III AGCGCT 1 cut(s) 561
EcoO109I RGGNCCY 2 cut(s) 1193, 1294
EcoRII CCWGG 3 cut(s) 246, 938, 1471
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 4 cut(s) 263, 756, 1077, 1356
ErhI CCWWGG 4 cut(s) 263, 756, 1077, 1356
FaqI GGGAC 3 cut(s) 708, 940, 1280
Fnu4HI GCNGC 4 cut(s) 6, 684, 1256, 1463
FokI GGATG 4 cut(s) 471, 838, 1028, 1189
Fsp4HI GCNGC 4 cut(s) 6, 684, 1256, 1463
FspBI CTAG 8 cut(s) 116, 173, 356, 501, 1299, 1419, 1452, 1492
GlaI GCGC 2 cut(s) 125, 561
GluI GCNGC 4 cut(s) 6, 684, 1256, 1463
GsaI CCCAGC 1 cut(s) 111
GsuI CTGGAG 2 cut(s) 935, 1494
HaeII RGCGCY 2 cut(s) 127, 563
HaeIII GGCC 4 cut(s) 8, 204, 612, 1355
HapII CCGG 1 cut(s) 1155
HhaI GCGC 2 cut(s) 126, 562
Hin6I GCGC 2 cut(s) 124, 560
HinP1I GCGC 2 cut(s) 124, 560
HinfI GANTC 3 cut(s) 229, 664, 905
HpaII CCGG 1 cut(s) 1155
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 19, 945
Hpy188I TCNGA 4 cut(s) 37, 669, 910, 1437
Hpy188III TCNNGA 4 cut(s) 595, 868, 914, 1175
Hpy8I GTNNAC 2 cut(s) 19, 945
HpyAV CCTTC 3 cut(s) 449, 1121, 1331
HpyCH4III ACNGT 2 cut(s) 479, 1372
HpyCH4IV ACGT 2 cut(s) 403, 1278
HpyCH4V TGCA 7 cut(s) 626, 686, 728, 975, 1202, 1258, 1462
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 130
HpyF3I CTNAG 4 cut(s) 291, 299, 668, 1068
HpySE526I ACGT 2 cut(s) 403, 1278
HspAI GCGC 2 cut(s) 124, 560
Kzo9I GATC 3 cut(s) 910, 1035, 1480
LmnI GCTCC 2 cut(s) 131, 374
Lsp1109I GCAGC 3 cut(s) 670, 1242, 1474
LweI GCATC 4 cut(s) 430, 783, 1211, 1274
MaeI CTAG 8 cut(s) 116, 173, 356, 501, 1299, 1419, 1452, 1492
MaeII ACGT 2 cut(s) 403, 1278
MaeIII GTNAC 3 cut(s) 508, 602, 714
MalI GATC 3 cut(s) 912, 1037, 1482
MboI GATC 3 cut(s) 910, 1035, 1480
MboII GAAGA 9 cut(s) 76, 146, 181, 238, 557, 718, 868, 905, 926
MflI RGATCY 2 cut(s) 910, 1480
MhlI GDGCHC 1 cut(s) 1076
MlsI TGGCCA 1 cut(s) 1355
MluNI TGGCCA 1 cut(s) 1355
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 5 cut(s) 194, 769, 1063, 1206, 1285
Mox20I TGGCCA 1 cut(s) 1355
MroXI GAANNNNTTC 1 cut(s) 923
MscI TGGCCA 1 cut(s) 1355
MseI TTAA 5 cut(s) 324, 585, 1286, 1364, 1403
MslI CAYNNNNRTG 4 cut(s) 649, 723, 749, 1173
Msp20I TGGCCA 1 cut(s) 1355
MspCI CTTAAG 1 cut(s) 1363
MspI CCGG 1 cut(s) 1155
MspR9I CCNGG 3 cut(s) 248, 940, 1473
MvaI CCWGG 3 cut(s) 248, 940, 1473
MwoI GCNNNNNNNGC 2 cut(s) 121, 130
NcoI CCATGG 2 cut(s) 756, 1077
NdeII GATC 3 cut(s) 910, 1035, 1480
NheI GCTAGC 1 cut(s) 115
NlaIV GGNNCC 5 cut(s) 1075, 1194, 1219, 1296, 1482
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 2 cut(s) 722, 1114
NspV TTCGAA 1 cut(s) 62
PaeI GCATGC 1 cut(s) 1114
PagI TCATGA 1 cut(s) 1174
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 3 cut(s) 229, 664, 905
PinAI ACCGGT 1 cut(s) 1154
PkrI GCNGC 4 cut(s) 7, 685, 1257, 1464
PpuMI RGGWCCY 2 cut(s) 1193, 1294
PsiI TTATAA 1 cut(s) 782
Psp5II RGGWCCY 2 cut(s) 1193, 1294
Psp6I CCWGG 3 cut(s) 246, 938, 1471
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 3 cut(s) 246, 938, 1471
PspN4I GGNNCC 5 cut(s) 1075, 1194, 1219, 1296, 1482
PspPI GGNCC 4 cut(s) 610, 1193, 1294, 1437
PspPPI RGGWCCY 2 cut(s) 1193, 1294
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 910, 1480
RseI CAYNNNNRTG 4 cut(s) 649, 723, 749, 1173
SaqAI TTAA 5 cut(s) 324, 585, 1286, 1364, 1403
SatI GCNGC 4 cut(s) 6, 684, 1256, 1463
Sau3AI GATC 3 cut(s) 910, 1035, 1480
Sau96I GGNCC 4 cut(s) 610, 1193, 1294, 1437
ScaI AGTACT 3 cut(s) 469, 1391, 1490
ScrFI CCNGG 3 cut(s) 248, 940, 1473
SduI GDGCHC 1 cut(s) 1076
SfaNI GCATC 4 cut(s) 430, 783, 1211, 1274
SfcI CTRYAG 4 cut(s) 309, 555, 684, 1371
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 3 cut(s) 1193, 1294, 1437
SmiMI CAYNNNNRTG 4 cut(s) 649, 723, 749, 1173
SmlI CTYRAG 3 cut(s) 593, 1223, 1363
SmoI CTYRAG 3 cut(s) 593, 1223, 1363
SphI GCATGC 1 cut(s) 1114
SsiI CCGC 4 cut(s) 5, 498, 661, 1100
SspI AATATT 3 cut(s) 257, 579, 931
SspMI CTAG 8 cut(s) 116, 173, 356, 501, 1299, 1419, 1452, 1492
StyD4I CCNGG 3 cut(s) 246, 938, 1471
StyI CCWWGG 4 cut(s) 263, 756, 1077, 1356
TaaI ACNGT 2 cut(s) 479, 1372
TaiI ACGT 2 cut(s) 406, 1281
TaqI TCGA 3 cut(s) 62, 274, 453
TatI WGTACW 5 cut(s) 16, 443, 467, 1389, 1488
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 229, 664, 905
Tru1I TTAA 5 cut(s) 324, 585, 1286, 1364, 1403
Tru9I TTAA 5 cut(s) 324, 585, 1286, 1364, 1403
TscAI CASTG 1 cut(s) 1265
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 3 cut(s) 683, 1255, 1462
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 4 cut(s) 852, 869, 1108, 1191
TspGWI ACGGA 1 cut(s) 1304
TspRI CASTG 1 cut(s) 1265
Vha464I CTTAAG 1 cut(s) 1363
VpaK11BI GGWCC 3 cut(s) 1193, 1294, 1437
XapI RAATTY 3 cut(s) 276, 315, 1282
XceI RCATGY 2 cut(s) 722, 1114
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 8 cut(s) 116, 173, 356, 501, 1299, 1419, 1452, 1492
ZrmI AGTACT 3 cut(s) 469, 1391, 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.