MD08G1241600.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000119
Physical Location & Seq
Forward (+)
30711357 .. 30720049
8693 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1241600.v1.1.491

Sequence Viewer

Length: 1827 bp
ATGGCTGCCCCCACAGTGGCTTTAGATATTGAGAACTGGACACGGGGAACTGAGAGCACTGCAGGTTCTCAAAATAACAGCATCGGGAGACAATTAACTAATTACATTAGAACAGATGGAGGACGTTCACGTTCATCAACCGGGACGGGAAAAGGGGCAACCGTGAAGGAAATTCTTGATCCACGGGGACGCTTCGGCGTAATATGGTCTAAGATGTTTGTGATTTCATGTGCGATTGCAGTCTCGCTCGATCCTTTCTTCTTTTACATTCCGGTCGTTGTTGAGGAGAAGAAATGCATAAGGAAGGACACGAGTTTGAGGACTGTAGCTCTCCTCTTACGTTCACTCACGGATATGACTTTCATAATACATATTTTACATGAAGTTCGTGTTACTAGTACCAACACTACTGCTGTGGCCATCTCCATCTTAGTTGACTTTCTCGCCATTCTTCCCATCCCACAGGTGGCAATATTGTTGTTCTTTCTAGATCTGAATGGCTTTGAGTATTTTTACAAAAGGAGTAAGATTTTGAATGCGTTTCTTCTCCTTCAATATCTACCAAAGGTGTATCGGATTCACTTGACCTCTAAGAAACTTAAGCCAAACACTGGAAAATGGGCTAAAGGGGCATTCAATTTCTTCCTCTACATTCTTGCTAGTCATATAACAGGAGCCTTTTGGTACTTCTATTCTATTCAACGAGAGATATCATGTTGGCATCGTGCTTGTATGCATCATCCTACAACTCCAGCATGCATGTCTACATATTTATGTGATGGTGCCACTACTACAACTTCAAGAAATATCTCCTTCCTTGGTGAAAAGTGTCCTACCAATCCAACAAATGCAACCCTATTTGATTTTGGAATGTTTAGTAGTGCCCTCGAGTCTGGTACCACGCGGTCAATGAACATTCCACCAAAGATCATTTACTCTATTTGGTGGGCTCTGCGAAATTTAAGTTCTTTTGGTCAGAATCTTCAAACGAGTACTTATGCGTGGGAAAACGGACTTGCAATTCTTATTTGTGTCATGGGTTTGCTACTGTTTCTACACCTTCTTGGGAATGTGCAGACATTCATTCAGTTGGCAACTATGAAATCAGAGGAAAAAAGACTAAATTCAGTGTTATCTATGAAGACGCAAAGGAAAAGGGTAGATATACATATGTGGATGGACAAAAATGGTATCCGTGATAAGCATATGAAGACAGGAATCATGAAAAACATAGAACAAATATTGAAAGGAAACAAAGACGTTGATATGGAGAACTTATTCTCTATGCTACAATGGCGAGTCAGAAAATCCATAAAGCATCATCTTTGCATGGATACGATTAAGAAAGTTCCTTTGCTTCATAATTTGGATGAACAAGTATTGCAAGCAGTATGTGGGAACCTTAAGCAAGTAATGTATGCCGAGGATAGTTTTATTGTCCGAGAAGGGGAGCCACTTGATAAGATGTTATTCATCACACAAGGCATTGCATGGATCTACTCATCGTCGTCTAGCAACACTGGAGGCAATGGATGTCTTCAGAAAAGCGACTTCTATGGCGAACAACTTCTAAGTTGGGCACTAAAATCCTCCTCGTTTTCTGATATTCCCATCTCGACCAGAACTGTTAAGTCCCACACCAAAGTTGAAGCCTTTGCTCTCATGGCCGTCGACGTGAAGTGTGTAGTCTCTAGACTCTGGTGGCATTTCAGCAAGGAGATGTCCAACTCGGAGGATCCTAGGCCGGAGCAATGGGAGCTCTTAGCAGCTTCTTCCATACAAGCAGCTTGGCGCAGCCGTCAGGCAAGGAAAGTCGGAAGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
No domains found.

Protein Analysis

609

Amino Acids

68.97

Weight (kDa)

9.49

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 2 cut(s) 782, 896
AccB7I CCANNNNNTGG 1 cut(s) 611
AccI GTMKAC 2 cut(s) 764, 1671
AccII CGCG 1 cut(s) 904
AciI CCGC 1 cut(s) 904
AclWI GGATC 5 cut(s) 173, 245, 1502, 1730, 1743
AcoI YGGCCR 2 cut(s) 417, 1665
AcsI RAATTY 3 cut(s) 171, 958, 1123
AcuI CTGAAG 1 cut(s) 1523
AfaI GTAC 4 cut(s) 400, 686, 898, 994
AfiI CCNNNNNNNGG 4 cut(s) 16, 466, 611, 1447
AflII CTTAAG 2 cut(s) 599, 1403
AgsI TTSAA 8 cut(s) 535, 554, 637, 701, 801, 986, 1246, 1649
AhlI ACTAGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 1675
AluBI AGCT 4 cut(s) 329, 1759, 1769, 1787
AluI AGCT 4 cut(s) 329, 1759, 1769, 1787
Alw21I GWGCWC 2 cut(s) 59, 1761
Alw26I GTCTC 3 cut(s) 82, 247, 1693
AlwI GGATC 5 cut(s) 173, 245, 1502, 1730, 1743
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 3 cut(s) 417, 1665, 1742
ApeKI GCWGC 4 cut(s) 5, 1766, 1784, 1794
ApoI RAATTY 3 cut(s) 171, 958, 1123
Asp700I GAANNNNTTC 2 cut(s) 1277, 1566
Asp718I GGTACC 1 cut(s) 896
AspA2I CCTAGG 1 cut(s) 1739
AspLEI GCGC 1 cut(s) 1794
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 833
AvaI CYCGRG 1 cut(s) 887
AvrII CCTAGG 1 cut(s) 1739
BaeGI GKGCMC 2 cut(s) 886, 1582
BalI TGGCCA 1 cut(s) 419
BamHI GGATCC 1 cut(s) 1735
BanI GGYRCC 2 cut(s) 782, 896
BanII GRGCYC 2 cut(s) 952, 1761
BauI CACGAG 1 cut(s) 310
BbsI GAAGAC 3 cut(s) 1148, 1217, 1529
Bbv12I GWGCWC 2 cut(s) 59, 1761
BbvI GCAGC 3 cut(s) 1778, 1796, 1806
BccI CCATC 7 cut(s) 110, 428, 434, 464, 773, 1171, 1619
BceAI ACGGC 2 cut(s) 1652, 1782
BciVI GTATCC 2 cut(s) 1202, 1327
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 3 cut(s) 82, 247, 1693
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 6 cut(s) 396, 488, 660, 1512, 1692, 1740
BfmI CTRYAG 2 cut(s) 60, 324
BfrI CTTAAG 2 cut(s) 599, 1403
BfuAI ACCTGC 1 cut(s) 53
BfuI GTATCC 2 cut(s) 1202, 1327
BglII AGATCT 1 cut(s) 490
BisI GCNGC 4 cut(s) 6, 1767, 1785, 1795
BlnI CCTAGG 1 cut(s) 1739
BlsI GCNGC 4 cut(s) 7, 1768, 1786, 1796
BmcAI AGTACT 1 cut(s) 994
Bme1390I CCNGG 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 887
BmgBI CACGTC 1 cut(s) 1675
BmiI GGNNCC 6 cut(s) 676, 784, 898, 1400, 1452, 1737
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 4 cut(s) 90, 730, 745, 1327
BpiI GAAGAC 3 cut(s) 1148, 1217, 1529
BpmI CTGGAG 2 cut(s) 735, 1542
BpuMI CCSGG 1 cut(s) 142
BsaJI CCNNGG 4 cut(s) 182, 817, 1422, 1739
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 466, 611, 1447
Bse1I ACTGG 3 cut(s) 41, 616, 1525
Bse3DI GCAATG 3 cut(s) 1485, 1534, 1757
BseDI CCNNGG 4 cut(s) 182, 817, 1422, 1739
BseGI GGATG 5 cut(s) 456, 739, 1182, 1375, 1538
BseLI CCNNNNNNNGG 4 cut(s) 16, 466, 611, 1447
BseMI GCAATG 3 cut(s) 1485, 1534, 1757
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 3 cut(s) 41, 616, 1525
BseRI GAGGAG 3 cut(s) 299, 323, 1582
BseSI GKGCMC 2 cut(s) 886, 1582
BseXI GCAGC 3 cut(s) 1778, 1796, 1806
BsgI GTGCAG 1 cut(s) 1094
Bsh1236I CGCG 1 cut(s) 904
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 419, 1667, 1744
BshNI GGYRCC 2 cut(s) 782, 896
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 59, 1761
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 3 cut(s) 141, 272, 1745
BslFI GGGAC 3 cut(s) 157, 201, 1618
BslI CCNNNNNNNGG 4 cut(s) 16, 466, 611, 1447
BsmAI GTCTC 3 cut(s) 82, 247, 1693
BsmFI GGGAC 3 cut(s) 157, 201, 1618
BsmI GAATGC 2 cut(s) 541, 632
BsnI GGCC 3 cut(s) 419, 1667, 1744
BsoBI CYCGRG 1 cut(s) 887
Bsp1286I GDGCHC 5 cut(s) 59, 886, 952, 1582, 1761
Bsp143I GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
BspACI CCGC 1 cut(s) 904
BspANI GGCC 3 cut(s) 419, 1667, 1744
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 904
BspHI TCATGA 1 cut(s) 1221
BspLI GGNNCC 6 cut(s) 676, 784, 898, 1400, 1452, 1737
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 5 cut(s) 173, 245, 1502, 1730, 1743
BspT107I GGYRCC 2 cut(s) 782, 896
BspTI CTTAAG 2 cut(s) 599, 1403
BsrDI GCAATG 3 cut(s) 1485, 1534, 1757
BsrI ACTGG 3 cut(s) 41, 616, 1525
BssECI CCNNGG 4 cut(s) 182, 817, 1422, 1739
BssMI GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
BssSI CACGAG 1 cut(s) 310
BssT1I CCWWGG 2 cut(s) 817, 1739
Bst2BI CACGAG 1 cut(s) 310
Bst4CI ACNGT 5 cut(s) 16, 163, 325, 1050, 1627
BstAFI CTTAAG 2 cut(s) 599, 1403
BstC8I GCNNGC 2 cut(s) 757, 1386
BstDEI CTNAG 6 cut(s) 51, 210, 430, 591, 1571, 1762
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 5 cut(s) 456, 739, 1182, 1375, 1538
BstFNI CGCG 1 cut(s) 904
BstHHI GCGC 1 cut(s) 1794
BstKTI GATC 6 cut(s) 181, 253, 493, 930, 1497, 1738
BstMAI GTCTC 3 cut(s) 82, 247, 1693
BstMBI GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 4 cut(s) 629, 1294, 1664, 1756
BstNSI RCATGY 2 cut(s) 759, 763
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 2 cut(s) 60, 324
BstSLI GKGCMC 2 cut(s) 886, 1582
BstUI CGCG 1 cut(s) 904
BstV1I GCAGC 3 cut(s) 1778, 1796, 1806
BstV2I GAAGAC 3 cut(s) 1148, 1217, 1529
BstX2I RGATCY 3 cut(s) 490, 1494, 1735
BstYI RGATCY 3 cut(s) 490, 1494, 1735
BsuI GTATCC 2 cut(s) 1202, 1327
BsuRI GGCC 3 cut(s) 419, 1667, 1744
BtgI CCRYGG 1 cut(s) 182
BtrI CACGTC 1 cut(s) 1675
BtsCI GGATG 5 cut(s) 456, 739, 1182, 1375, 1538
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 5 cut(s) 21, 57, 609, 1134, 1518
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 757, 1386
CciI TCATGA 1 cut(s) 1221
CfoI GCGC 1 cut(s) 1794
CseI GACGC 2 cut(s) 198, 1153
Csp6I GTAC 4 cut(s) 399, 685, 897, 993
CviQI GTAC 4 cut(s) 399, 685, 897, 993
DdeI CTNAG 6 cut(s) 51, 210, 430, 591, 1571, 1762
DpnI GATC 6 cut(s) 180, 252, 492, 929, 1496, 1737
DpnII GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
EaeI YGGCCR 2 cut(s) 417, 1665
Ecl136II GAGCTC 1 cut(s) 1759
Eco130I CCWWGG 2 cut(s) 817, 1739
Eco24I GRGCYC 2 cut(s) 952, 1761
Eco32I GATATC 1 cut(s) 711
Eco53kI GAGCTC 1 cut(s) 1759
Eco57I CTGAAG 1 cut(s) 1523
Eco88I CYCGRG 1 cut(s) 887
EcoICRI GAGCTC 1 cut(s) 1759
EcoRV GATATC 1 cut(s) 711
EcoT14I CCWWGG 2 cut(s) 817, 1739
EcoT22I ATGCAT 3 cut(s) 299, 738, 761
EcoT38I GRGCYC 2 cut(s) 952, 1761
ErhI CCWWGG 2 cut(s) 817, 1739
FaqI GGGAC 3 cut(s) 157, 201, 1618
FauNDI CATATG 2 cut(s) 1170, 1206
FblI GTMKAC 2 cut(s) 764, 1671
Fnu4HI GCNGC 4 cut(s) 6, 1767, 1785, 1795
FokI GGATG 5 cut(s) 443, 726, 1189, 1382, 1545
FriOI GRGCYC 2 cut(s) 952, 1761
Fsp4HI GCNGC 4 cut(s) 6, 1767, 1785, 1795
FspBI CTAG 6 cut(s) 396, 488, 660, 1512, 1692, 1740
GlaI GCGC 1 cut(s) 1793
GluI GCNGC 4 cut(s) 6, 1767, 1785, 1795
GsuI CTGGAG 2 cut(s) 735, 1542
HaeIII GGCC 3 cut(s) 419, 1667, 1744
HapII CCGG 3 cut(s) 141, 272, 1745
HgaI GACGC 2 cut(s) 198, 1153
HhaI GCGC 1 cut(s) 1794
Hin6I GCGC 1 cut(s) 1792
HinP1I GCGC 1 cut(s) 1792
HincII GTYRAC 2 cut(s) 436, 1672
HindII GTYRAC 2 cut(s) 436, 1672
HinfI GANTC 6 cut(s) 577, 890, 979, 1218, 1299, 1695
HpaII CCGG 3 cut(s) 141, 272, 1745
HphI GGTGA 1 cut(s) 833
Hpy166II GTNNAC 5 cut(s) 128, 344, 436, 765, 1672
Hpy188III TCNNGA 7 cut(s) 85, 176, 488, 801, 1222, 1615, 1692
Hpy8I GTNNAC 5 cut(s) 128, 344, 436, 765, 1672
Hpy99I CGWCG 3 cut(s) 1510, 1673, 1676
HpyAV CCTTC 6 cut(s) 160, 298, 560, 823, 1070, 1439
HpyCH4III ACNGT 5 cut(s) 16, 163, 325, 1050, 1627
HpyCH4IV ACGT 5 cut(s) 124, 130, 340, 1260, 1674
HpyF10VI GCNNNNNNNGC 4 cut(s) 629, 1294, 1664, 1756
HpyF3I CTNAG 6 cut(s) 51, 210, 430, 591, 1571, 1762
HpySE526I ACGT 5 cut(s) 124, 130, 340, 1260, 1674
HspAI GCGC 1 cut(s) 1792
KpnI GGTACC 1 cut(s) 900
Kzo9I GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
LmnI GCTCC 4 cut(s) 674, 1450, 1747, 1756
Lsp1109I GCAGC 3 cut(s) 1778, 1796, 1806
LweI GCATC 4 cut(s) 90, 730, 745, 1327
MaeI CTAG 6 cut(s) 396, 488, 660, 1512, 1692, 1740
MaeII ACGT 5 cut(s) 124, 130, 340, 1260, 1674
MaeIII GTNAC 1 cut(s) 391
MalI GATC 6 cut(s) 180, 252, 492, 929, 1496, 1737
MboI GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
MflI RGATCY 3 cut(s) 490, 1494, 1735
MhlI GDGCHC 5 cut(s) 59, 886, 952, 1582, 1761
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 8 cut(s) 92, 100, 171, 637, 958, 1020, 1123, 1363
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 3 cut(s) 899, 1308, 1689
MmeI TCCRAC 3 cut(s) 866, 1749, 1795
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 3 cut(s) 299, 738, 761
MroXI GAANNNNTTC 2 cut(s) 1277, 1566
MscI TGGCCA 1 cut(s) 419
MseI TTAA 6 cut(s) 95, 600, 962, 1341, 1404, 1629
MslI CAYNNNNRTG 2 cut(s) 353, 772
Msp20I TGGCCA 1 cut(s) 419
MspCI CTTAAG 2 cut(s) 599, 1403
MspI CCGG 3 cut(s) 141, 272, 1745
MspR9I CCNGG 1 cut(s) 142
Mva1269I GAATGC 2 cut(s) 541, 632
MvnI CGCG 1 cut(s) 904
MwoI GCNNNNNNNGC 4 cut(s) 629, 1294, 1664, 1756
NciI CCSGG 1 cut(s) 142
NdeI CATATG 2 cut(s) 1170, 1206
NdeII GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
NlaIV GGNNCC 6 cut(s) 676, 784, 898, 1400, 1452, 1737
NmeAIII GCCGAG 1 cut(s) 1447
NsiI ATGCAT 3 cut(s) 299, 738, 761
NspI RCATGY 2 cut(s) 759, 763
PaeI GCATGC 1 cut(s) 759
PaeR7I CTCGAG 1 cut(s) 887
PagI TCATGA 1 cut(s) 1221
PctI GAATGC 2 cut(s) 541, 632
PdmI GAANNNNTTC 2 cut(s) 1277, 1566
PfeI GAWTC 3 cut(s) 577, 979, 1218
PflMI CCANNNNNTGG 1 cut(s) 611
PkrI GCNGC 4 cut(s) 7, 1768, 1786, 1796
PleI GAGTC 3 cut(s) 898, 1307, 1689
PpsI GAGTC 3 cut(s) 898, 1307, 1689
Psp124BI GAGCTC 1 cut(s) 1761
PspN4I GGNNCC 6 cut(s) 676, 784, 898, 1400, 1452, 1737
PspXI VCTCGAGB 1 cut(s) 887
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 3 cut(s) 490, 1494, 1735
RsaI GTAC 4 cut(s) 400, 686, 898, 994
RsaNI GTAC 4 cut(s) 399, 685, 897, 993
RseI CAYNNNNRTG 2 cut(s) 353, 772
SacI GAGCTC 1 cut(s) 1761
SalI GTCGAC 1 cut(s) 1670
SaqAI TTAA 6 cut(s) 95, 600, 962, 1341, 1404, 1629
SatI GCNGC 4 cut(s) 6, 1767, 1785, 1795
Sau3AI GATC 6 cut(s) 178, 250, 490, 927, 1494, 1735
ScaI AGTACT 1 cut(s) 994
SchI GAGTC 3 cut(s) 899, 1308, 1689
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 5 cut(s) 59, 886, 952, 1582, 1761
SfaNI GCATC 4 cut(s) 90, 730, 745, 1327
SfcI CTRYAG 2 cut(s) 60, 324
Sfr274I CTCGAG 1 cut(s) 887
SgrDI CGTCGACG 1 cut(s) 1670
SlaI CTCGAG 1 cut(s) 887
SmiMI CAYNNNNRTG 2 cut(s) 353, 772
SmlI CTYRAG 3 cut(s) 599, 887, 1403
SmoI CTYRAG 3 cut(s) 599, 887, 1403
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 759
Sse9I AATT 8 cut(s) 92, 100, 171, 637, 958, 1020, 1123, 1363
SsiI CCGC 1 cut(s) 904
SspI AATATT 2 cut(s) 474, 1242
SspMI CTAG 6 cut(s) 396, 488, 660, 1512, 1692, 1740
SstI GAGCTC 1 cut(s) 1761
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 2 cut(s) 817, 1739
TaaI ACNGT 5 cut(s) 16, 163, 325, 1050, 1627
TaiI ACGT 5 cut(s) 127, 133, 343, 1263, 1677
TaqI TCGA 4 cut(s) 249, 888, 1616, 1671
TasI AATT 8 cut(s) 92, 100, 171, 637, 958, 1020, 1123, 1363
TatI WGTACW 1 cut(s) 992
TfiI GAWTC 3 cut(s) 577, 979, 1218
Tru1I TTAA 6 cut(s) 95, 600, 962, 1341, 1404, 1629
Tru9I TTAA 6 cut(s) 95, 600, 962, 1341, 1404, 1629
TscAI CASTG 5 cut(s) 21, 64, 616, 1134, 1525
TseI GCWGC 4 cut(s) 5, 1766, 1784, 1794
TspGWI ACGGA 3 cut(s) 365, 1026, 1184
TspRI CASTG 5 cut(s) 21, 64, 616, 1134, 1525
Van91I CCANNNNNTGG 1 cut(s) 611
Vha464I CTTAAG 2 cut(s) 599, 1403
XapI RAATTY 3 cut(s) 171, 958, 1123
XbaI TCTAGA 2 cut(s) 487, 1691
XceI RCATGY 2 cut(s) 759, 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 887
XmaJI CCTAGG 1 cut(s) 1739
XmiI GTMKAC 2 cut(s) 764, 1671
XmnI GAANNNNTTC 2 cut(s) 1277, 1566
XspI CTAG 6 cut(s) 396, 488, 660, 1512, 1692, 1740
ZrmI AGTACT 1 cut(s) 994
Zsp2I ATGCAT 3 cut(s) 299, 738, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.