Rroxscaffold_6G00395890

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000119
Physical Location & Seq
Forward (+)
17032456 .. 17033128
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395890.1

Sequence Viewer

Length: 549 bp
ATGTCTAACACGCAGGTACCCAATGACGGCCCTATGATGAGCAACACACAGGGAAGCAAGCACAATGCCGACAATGTTGAGTCACAACCGCGAGATCCCCTGTGGAGAGATCCAGATGCAGTTTCAACAAAACAAAAATTGGGAGAACCACTTATTTCAGTTTCATTCTGGAATAAGATGTTCGTAATTGCATGTGTGATCGCGGTCTCATTAGACCCGGTGTTCTTCTACATTCCAGTCATCAATGAAGAACGAAAGTGTCTTGCATTAAACATAGAGTTGATGACTATAGCTCTCACTTTGCGATCGCTCACTGATGTCACTTTCGTAGTGAGTATCATATATCATGTTTGCAAAGCCATCAACGATGCGCACAAAGAACACAGACTCAAAAAGTCTGATGAAGTGGCACCGGATTGGGAATTTTCAAAGGTATCAGCAGCGGAGATAATTCCATTTGCTAAATTAGTTGCTGGGAAGCTAGCATGGCGCTCTACGCTAACCAGCCTTTTAGCTGTTTTTCCCATGCCACAAGTAAGCAGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

182

Amino Acids

20.33

Weight (kDa)

6.9

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 4
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 409
AccII CGCG 2 cut(s) 91, 203
AciI CCGC 3 cut(s) 89, 203, 443
AclWI GGATC 2 cut(s) 89, 104
AcsI RAATTY 1 cut(s) 422
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 126, 429
AluBI AGCT 3 cut(s) 293, 481, 515
AluI AGCT 3 cut(s) 293, 481, 515
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 2 cut(s) 89, 104
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 422
AsiSI GCGATCGC 1 cut(s) 308
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 2 cut(s) 373, 492
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 481
BaeI ACNNNNGTAYC 1 cut(s) 33
BanI GGYRCC 2 cut(s) 16, 409
BbvI GCAGC 1 cut(s) 452
BccI CCATC 1 cut(s) 368
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 18, 411
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 106, 358
BmtI GCTAGC 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 473
Bsh1236I CGCG 2 cut(s) 91, 203
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 16, 409
BsiEI CGRYCG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 218, 413
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 211
Bsp143I GATC 5 cut(s) 94, 109, 198, 305, 542
BspACI CCGC 3 cut(s) 89, 203, 443
BspANI GGCC 1 cut(s) 30
BspFNI CGCG 2 cut(s) 91, 203
BspLI GGNNCC 2 cut(s) 18, 411
BspMI ACCTGC 1 cut(s) 4
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 89, 104
BspT107I GGYRCC 2 cut(s) 16, 409
BspTNI GGTCTC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 236
BssMI GATC 5 cut(s) 94, 109, 198, 305, 542
BstC8I GCNNGC 2 cut(s) 59, 483
BstFNI CGCG 2 cut(s) 91, 203
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 2 cut(s) 373, 492
BstKTI GATC 5 cut(s) 97, 112, 201, 308, 545
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 5 cut(s) 94, 109, 198, 305, 542
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 2 cut(s) 487, 496
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 288
BstUI CGCG 2 cut(s) 91, 203
BstV1I GCAGC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 94, 109
BstYI RGATCY 2 cut(s) 94, 109
BsuRI GGCC 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 59, 483
CfoI GCGC 2 cut(s) 373, 492
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 17
CviAII CATG 4 cut(s) 192, 347, 486, 526
CviJI RGCY 6 cut(s) 30, 293, 359, 481, 507, 515
CviKI_1 RGCY 6 cut(s) 30, 293, 359, 481, 507, 515
CviQI GTAC 1 cut(s) 17
DpnI GATC 5 cut(s) 96, 111, 200, 307, 544
DpnII GATC 5 cut(s) 94, 109, 198, 305, 542
Eco31I GGTCTC 1 cut(s) 211
FaeI CATG 4 cut(s) 195, 350, 489, 529
FatI CATG 4 cut(s) 191, 346, 485, 525
Fnu4HI GCNGC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 441
FspAI RTGCGCAY 1 cut(s) 372
FspBI CTAG 1 cut(s) 482
FspI TGCGCA 1 cut(s) 372
GlaI GCGC 2 cut(s) 372, 491
GluI GCNGC 1 cut(s) 441
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 218, 413
HhaI GCGC 2 cut(s) 373, 492
Hin1II CATG 4 cut(s) 195, 350, 489, 529
Hin6I GCGC 2 cut(s) 371, 490
HinP1I GCGC 2 cut(s) 371, 490
HinfI GANTC 2 cut(s) 80, 387
HpaII CCGG 2 cut(s) 218, 413
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 113, 169
HpyCH4V TGCA 4 cut(s) 119, 191, 266, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 496
Hsp92II CATG 4 cut(s) 195, 350, 489, 529
HspAI GCGC 2 cut(s) 371, 490
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 5 cut(s) 94, 109, 198, 305, 542
LpnPI CCDG 9 cut(s) 35, 113, 126, 154, 231, 249, 426, 459, 517
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 2 cut(s) 106, 358
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 2 cut(s) 81, 319
MalI GATC 5 cut(s) 96, 111, 200, 307, 544
MboI GATC 5 cut(s) 94, 109, 198, 305, 542
MboII GAAGA 2 cut(s) 217, 260
MflI RGATCY 2 cut(s) 94, 109
MluCI AATT 5 cut(s) 137, 186, 422, 450, 464
MlyI GAGTC 2 cut(s) 89, 381
MseI TTAA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 218, 413
MspR9I CCNGG 1 cut(s) 218
MvnI CGCG 2 cut(s) 91, 203
MwoI GCNNNNNNNGC 2 cut(s) 487, 496
NciI CCSGG 1 cut(s) 218
NdeII GATC 5 cut(s) 94, 109, 198, 305, 542
NheI GCTAGC 1 cut(s) 481
NlaIII CATG 4 cut(s) 195, 350, 489, 529
NlaIV GGNNCC 2 cut(s) 18, 411
NmuCI GTSAC 2 cut(s) 81, 319
NsbI TGCGCA 1 cut(s) 372
NspI RCATGY 1 cut(s) 195
PkrI GCNGC 1 cut(s) 442
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 2 cut(s) 88, 381
PpsI GAGTC 2 cut(s) 88, 381
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 2 cut(s) 18, 411
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 2 cut(s) 94, 109
PvuI CGATCG 1 cut(s) 308
RgaI GCGATCGC 1 cut(s) 308
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 5 cut(s) 94, 109, 198, 305, 542
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 2 cut(s) 89, 381
ScrFI CCNGG 1 cut(s) 218
SetI ASST 5 cut(s) 18, 295, 435, 483, 517
SfaAI GCGATCGC 1 cut(s) 308
SfaNI GCATC 2 cut(s) 106, 358
SfcI CTRYAG 1 cut(s) 288
SgfI GCGATCGC 1 cut(s) 308
Sse9I AATT 5 cut(s) 137, 186, 422, 450, 464
SsiI CCGC 3 cut(s) 89, 203, 443
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 216
TasI AATT 5 cut(s) 137, 186, 422, 450, 464
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 81, 319
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 81, 319
TspDTI ATGAA 3 cut(s) 153, 261, 417
TspRI CASTG 1 cut(s) 319
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 195
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.