Rh1DG440300

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000119
Physical Location & Seq
Reverse (-)
65059028 .. 65072866
13839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG440300.1

Sequence Viewer

Length: 1929 bp
ATGTATCCTACTTCATTGTCAGAGCTCCATACTTCGCTCTTAGCTGCCAGTACTACAAGTTGTCTACTTGATCACCATTTCCTGAAGACTGCGGTTGGGAAAATTGCTGGAGTACGAAGATTTTCCTTGGCTTTGTTAGTACCCTGCTACGATGATGAGAGCATCATCGATTTCAGCGGTTCATTTGAAATAGGTTATGATTTCAACTGTCCAGTACCGCGGACACGCCGCGAACTTGGAGAAGCTCAAGCAAGCAACAAAGGGAAAAGGCCAACAGTTGCGGAAATTCTCTCAGTTTTGAACCCACGGTGGAGTACGATACTATTAACTTCATGGGTGATTGCAGTTTTATCTGATCCTTTGTTCTTTTACATTCCATACATCAAAGAGGAAGAAAAGTGCATGGGAATCGATAAAAAAGTGCGGACTGCAGCTCTGGTTTTTCGATCAGTCACGGACATCACTCTCCTAGTGCATATCATATACCAACTTCGCGAAGCTATCAAATTTGCAGCCTCAAAGGTTCCAAGGGATACAAATTCATATTATTGGGAACAGAAATCGGTATCCCGAGCTCAGATGATAAAGTTTGCGAAGGAATTTTCTCGCAAATTGTCATGGCGCTCTTTCCTAACTGATGTTTTCGCTATTTTCCCCATGCCACAAGTTCTAATAGTGATTGTCTTCTTCGGAAAGAGGGACTTTGGATATTTGGATAAAAAAGTTCTAAATATCTTTCTTCTCATCCAATATTGGCCAAGGATTTGTCTACTGCGCCGATCGTTCAAGGAACTTAGCACTGGGATATTGGCCCGTGTTGCATTTAATTTCTTTTTGTACCTCTATGCCGGTTATGTACTTGGAGCATTGTGGTATTTTATTTCTATTCAACGAGAAATGTCATGTTGGTACCGCACTTGTATAAAGTACAGTAATGCATGCAATACTTTTCATTGCGATGATGATAGTTCAAAAAATATTATATTGATAGATGAATCTTGCCCAATGAATCCACCGAATGCTACTGTGTTTGATTTTGGAATATTTACTAATTCCCTTCAATCGAGTAGTACAGGATCGGTAAACTTTTCAACAAAGATGTTTTATTCGTTCTGGTGGGGCTTACGGAATCTAAGTAATTTTGCCACTAATCTCGAAACAAGTAATTATTTGTGGGAGAACTGCTTTGCCATTGTACTCTCCATCACTGGCTTGATATCATTTTTATATCTCATCGGATATAATGTGCAGAAGGCTATGGAGAAATATAAGGAAAAGGAAGTGGAAGTACTGGAGCAGAGAAGAGAGAGGATTCAAAAGAAAAAGCAAGATATAGAAAATTGGATGGTAAAAAAAGGTCTCCAAAATGACATGAGGGAAGAGATCATGAAAAACATCAAGCCAAAATTGGAAGAGGACATAAATGCAGATCTGGACGATCTATCGATTCTATTCTCTATTCTTCCGTGGCATACCAAGAAAGCTCTAAAGCGCGTACTCTGCATGAGTGCGCTAAGAAAAATGGGAGAACCAGTTGATCGAATGGTCTTCATTACAGAAGGGCTTATGTGGACTTACACGACTGCTACTGAGAGTAGTCATTATGGAAAAGCAACAAAACCGGCTACTTCTCCATCCATGGATACCAACTTCCTCAAGAAGGGTGATTCTTATGGACACGCGCTTCTGCAGTTTGCATCATCATCTCTTGCGGCACTCCCTGCCTCGAACGCAAATGTCCGGTGTCACACAAGGGTTGAGGCGTTTGTTCTCATGGCCAAGGACTTGAAAAACATAGTAACTAAATACGAACATTTGTGGTCTTTCGACTACAATACTTCTAAAGATGAGGCGGCGGATAAGGTGGCACCACTGGGGCAGTTGCCAAAGAAGTGTGTATCAACATCGACCACTGGCAACCGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

642

Amino Acids

73.56

Weight (kDa)

9.05

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 909
AccB1I GGYRCC 2 cut(s) 909, 1867
AccI GTMKAC 2 cut(s) 64, 769
AccII CGCG 5 cut(s) 220, 231, 495, 1494, 1682
AclWI GGATC 2 cut(s) 350, 1084
AcoI YGGCCR 2 cut(s) 755, 1776
AcsI RAATTY 4 cut(s) 285, 506, 538, 599
AcuI CTGAAG 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 1660
AluBI AGCT 7 cut(s) 25, 44, 245, 434, 500, 575, 1484
AluI AGCT 7 cut(s) 25, 44, 245, 434, 500, 575, 1484
Alw21I GWGCWC 2 cut(s) 27, 577
Alw26I GTCTC 1 cut(s) 1364
AlwI GGATC 2 cut(s) 350, 1084
Ama87I CYCGRG 1 cut(s) 570
AoxI GGCC 4 cut(s) 269, 755, 810, 1776
ApeKI GCWGC 3 cut(s) 44, 431, 512
ApoI RAATTY 4 cut(s) 285, 506, 538, 599
Asp700I GAANNNNTTC 1 cut(s) 121
Asp718I GGTACC 1 cut(s) 909
AspLEI GCGC 5 cut(s) 624, 777, 1494, 1513, 1684
AspS9I GGNCC 1 cut(s) 811
AsuHPI GGTGA 3 cut(s) 65, 349, 1676
AvaI CYCGRG 1 cut(s) 570
BalI TGGCCA 2 cut(s) 757, 1778
BanI GGYRCC 2 cut(s) 909, 1867
BanII GRGCYC 2 cut(s) 27, 577
BarI GAAGNNNNNNTAC 2 cut(s) 1272, 1304
BbsI GAAGAC 3 cut(s) 92, 676, 1540
Bbv12I GWGCWC 2 cut(s) 27, 577
BbvI GCAGC 3 cut(s) 31, 443, 524
BccI CCATC 3 cut(s) 1211, 1339, 1642
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciVI GTATCC 4 cut(s) 15, 526, 577, 1636
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 1364
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 2 cut(s) 429, 1688
BfoI RGCGCY 1 cut(s) 625
BfuI GTATCC 4 cut(s) 15, 526, 577, 1636
BglII AGATCT 1 cut(s) 1429
BisI GCNGC 6 cut(s) 45, 229, 432, 513, 1713, 1854
BlsI GCNGC 6 cut(s) 46, 230, 433, 514, 1714, 1855
BmcAI AGTACT 2 cut(s) 52, 1290
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 811
BmiI GGNNCC 3 cut(s) 525, 911, 1869
BmrI ACTGGG 2 cut(s) 810, 1883
BmsI GCATC 2 cut(s) 171, 1706
BmuI ACTGGG 2 cut(s) 810, 1883
BpiI GAAGAC 3 cut(s) 92, 676, 1540
BpmI CTGGAG 2 cut(s) 129, 1313
BpuEI CTTGAG 2 cut(s) 231, 1640
Bsa29I ATCGAT 3 cut(s) 168, 411, 1445
BsaI GGTCTC 1 cut(s) 1364
BsaJI CCNNGG 9 cut(s) 126, 218, 305, 527, 758, 1466, 1638, 1779, 1921
BsaWI WCCGGW 1 cut(s) 1740
BsaXI ACNNNNNCTCC 2 cut(s) 1518, 1548
Bsc4I CCNNNNNNNGG 1 cut(s) 1660
Bse118I RCCGGY 2 cut(s) 848, 1621
Bse1I ACTGG 8 cut(s) 48, 212, 805, 1213, 1296, 1532, 1878, 1918
Bse3DI GCAATG 1 cut(s) 952
BseCI ATCGAT 3 cut(s) 168, 411, 1445
BseDI CCNNGG 9 cut(s) 126, 218, 305, 527, 758, 1466, 1638, 1779, 1921
BseGI GGATG 3 cut(s) 744, 1350, 1634
BseLI CCNNNNNNNGG 1 cut(s) 1660
BseMI GCAATG 1 cut(s) 952
BseMII CTCAG 3 cut(s) 306, 590, 1581
BseNI ACTGG 8 cut(s) 48, 212, 805, 1213, 1296, 1532, 1878, 1918
BseXI GCAGC 3 cut(s) 31, 443, 524
BsgI GTGCAG 1 cut(s) 1268
Bsh1236I CGCG 5 cut(s) 220, 231, 495, 1494, 1682
Bsh1285I CGRYCG 1 cut(s) 782
BshFI GGCC 4 cut(s) 271, 757, 812, 1778
BshNI GGYRCC 2 cut(s) 909, 1867
BshVI ATCGAT 3 cut(s) 168, 411, 1445
BsiEI CGRYCG 1 cut(s) 782
BsiHKAI GWGCWC 2 cut(s) 27, 577
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 3 cut(s) 849, 1622, 1741
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 1 cut(s) 1660
BsmAI GTCTC 1 cut(s) 1364
BsmFI GGGAC 1 cut(s) 713
BsmI GAATGC 1 cut(s) 1024
BsnI GGCC 4 cut(s) 271, 757, 812, 1778
Bso31I GGTCTC 1 cut(s) 1364
BsoBI CYCGRG 1 cut(s) 570
Bsp1286I GDGCHC 2 cut(s) 27, 577
Bsp143I GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
Bsp19I CCATGG 1 cut(s) 1638
Bsp68I TCGCGA 1 cut(s) 495
BspANI GGCC 4 cut(s) 271, 757, 812, 1778
BspCNI CTCAG 3 cut(s) 305, 589, 1582
BspDI ATCGAT 3 cut(s) 168, 411, 1445
BspFNI CGCG 5 cut(s) 220, 231, 495, 1494, 1682
BspHI TCATGA 1 cut(s) 1386
BspLI GGNNCC 3 cut(s) 525, 911, 1869
BspMAI CTGCAG 2 cut(s) 433, 1692
BspPI GGATC 2 cut(s) 350, 1084
BspT107I GGYRCC 2 cut(s) 909, 1867
BspTNI GGTCTC 1 cut(s) 1364
BsrDI GCAATG 1 cut(s) 952
BsrFI RCCGGY 2 cut(s) 848, 1621
BsrI ACTGG 8 cut(s) 48, 212, 805, 1213, 1296, 1532, 1878, 1918
BssAI RCCGGY 2 cut(s) 848, 1621
BssECI CCNNGG 9 cut(s) 126, 218, 305, 527, 758, 1466, 1638, 1779, 1921
BssMI GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
BssT1I CCWWGG 5 cut(s) 126, 527, 758, 1638, 1779
Bst4CI ACNGT 6 cut(s) 209, 277, 309, 932, 1027, 1922
Bst6I CTCTTC 3 cut(s) 1297, 1374, 1407
BstAPI GCANNNNNTGC 1 cut(s) 1721
BstC8I GCNNGC 2 cut(s) 253, 940
BstDEI CTNAG 7 cut(s) 40, 292, 576, 794, 1133, 1514, 1590
BstDSI CCRYGG 5 cut(s) 218, 305, 1466, 1638, 1921
BstENI CCTNNNNNAGG 1 cut(s) 1658
BstF5I GGATG 3 cut(s) 744, 1350, 1634
BstFNI CGCG 5 cut(s) 220, 231, 495, 1494, 1682
BstH2I RGCGCY 1 cut(s) 625
BstHHI GCGC 5 cut(s) 624, 777, 1494, 1513, 1684
BstKTI GATC 9 cut(s) 73, 358, 449, 782, 1079, 1386, 1432, 1441, 1540
BstMAI GTCTC 1 cut(s) 1364
BstMBI GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
BstMCI CGRYCG 1 cut(s) 782
BstMWI GCNNNNNNNGC 4 cut(s) 818, 1500, 1721, 1730
BstNSI RCATGY 1 cut(s) 942
BstSFI CTRYAG 2 cut(s) 429, 1688
BstUI CGCG 5 cut(s) 220, 231, 495, 1494, 1682
BstV1I GCAGC 3 cut(s) 31, 443, 524
BstV2I GAAGAC 3 cut(s) 92, 676, 1540
BstX2I RGATCY 1 cut(s) 1429
BstYI RGATCY 1 cut(s) 1429
Bsu15I ATCGAT 3 cut(s) 168, 411, 1445
BsuI GTATCC 4 cut(s) 15, 526, 577, 1636
BsuRI GGCC 4 cut(s) 271, 757, 812, 1778
BsuTUI ATCGAT 3 cut(s) 168, 411, 1445
BtgI CCRYGG 5 cut(s) 218, 305, 1466, 1638, 1921
BtgZI GCGATG 1 cut(s) 972
BtsCI GGATG 3 cut(s) 744, 1350, 1634
BtsIMutI CAGTG 4 cut(s) 798, 1206, 1871, 1911
BtuMI TCGCGA 1 cut(s) 495
Cac8I GCNNGC 2 cut(s) 253, 940
CciI TCATGA 1 cut(s) 1386
CfoI GCGC 5 cut(s) 624, 777, 1494, 1513, 1684
Cfr10I RCCGGY 2 cut(s) 848, 1621
Cfr13I GGNCC 1 cut(s) 811
Cfr42I CCGCGG 1 cut(s) 221
ClaI ATCGAT 3 cut(s) 168, 411, 1445
DdeI CTNAG 7 cut(s) 40, 292, 576, 794, 1133, 1514, 1590
DpnI GATC 9 cut(s) 72, 357, 448, 781, 1078, 1385, 1431, 1440, 1539
DpnII GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
EaeI YGGCCR 2 cut(s) 755, 1776
Eam1104I CTCTTC 3 cut(s) 1297, 1374, 1407
EarI CTCTTC 3 cut(s) 1297, 1374, 1407
EciI GGCGGA 1 cut(s) 1871
Ecl136II GAGCTC 2 cut(s) 25, 575
Eco130I CCWWGG 5 cut(s) 126, 527, 758, 1638, 1779
Eco24I GRGCYC 2 cut(s) 27, 577
Eco31I GGTCTC 1 cut(s) 1364
Eco32I GATATC 1 cut(s) 1218
Eco53kI GAGCTC 2 cut(s) 25, 575
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 570
EcoICRI GAGCTC 2 cut(s) 25, 575
EcoNI CCTNNNNNAGG 1 cut(s) 1658
EcoRV GATATC 1 cut(s) 1218
EcoT14I CCWWGG 5 cut(s) 126, 527, 758, 1638, 1779
EcoT22I ATGCAT 1 cut(s) 940
EcoT38I GRGCYC 2 cut(s) 27, 577
ErhI CCWWGG 5 cut(s) 126, 527, 758, 1638, 1779
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FaqI GGGAC 1 cut(s) 713
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 2 cut(s) 64, 769
Fnu4HI GCNGC 6 cut(s) 45, 229, 432, 513, 1713, 1854
FokI GGATG 3 cut(s) 731, 1357, 1621
FriOI GRGCYC 2 cut(s) 27, 577
Fsp4HI GCNGC 6 cut(s) 45, 229, 432, 513, 1713, 1854
FspBI CTAG 1 cut(s) 470
GlaI GCGC 5 cut(s) 623, 776, 1493, 1512, 1683
GluI GCNGC 6 cut(s) 45, 229, 432, 513, 1713, 1854
GsuI CTGGAG 2 cut(s) 129, 1313
HaeII RGCGCY 1 cut(s) 625
HaeIII GGCC 4 cut(s) 271, 757, 812, 1778
HapII CCGG 3 cut(s) 849, 1622, 1741
HhaI GCGC 5 cut(s) 624, 777, 1494, 1513, 1684
Hin6I GCGC 5 cut(s) 622, 775, 1492, 1511, 1682
HinP1I GCGC 5 cut(s) 622, 775, 1492, 1511, 1682
HinfI GANTC 7 cut(s) 408, 995, 1009, 1129, 1312, 1447, 1667
HpaII CCGG 3 cut(s) 849, 1622, 1741
HphI GGTGA 3 cut(s) 65, 349, 1676
Hpy166II GTNNAC 4 cut(s) 65, 770, 1084, 1572
Hpy188I TCNGA 5 cut(s) 22, 355, 579, 692, 1238
Hpy188III TCNNGA 7 cut(s) 82, 494, 570, 1154, 1387, 1433, 1657
Hpy8I GTNNAC 4 cut(s) 65, 770, 1084, 1572
HpyAV CCTTC 5 cut(s) 589, 1067, 1246, 1553, 1654
HpyCH4III ACNGT 6 cut(s) 209, 277, 309, 932, 1027, 1922
HpyF10VI GCNNNNNNNGC 4 cut(s) 818, 1500, 1721, 1730
HpyF3I CTNAG 7 cut(s) 40, 292, 576, 794, 1133, 1514, 1590
HspAI GCGC 5 cut(s) 622, 775, 1492, 1511, 1682
KpnI GGTACC 1 cut(s) 913
Ksp22I TGATCA 1 cut(s) 70
KspI CCGCGG 1 cut(s) 221
Kzo9I GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
LmnI GCTCC 3 cut(s) 30, 863, 1294
Lsp1109I GCAGC 3 cut(s) 31, 443, 524
LweI GCATC 2 cut(s) 171, 1706
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 3 cut(s) 451, 1745, 1798
MalI GATC 9 cut(s) 72, 357, 448, 781, 1078, 1385, 1431, 1440, 1539
MboI GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
MflI RGATCY 1 cut(s) 1429
MhlI GDGCHC 2 cut(s) 27, 577
MlsI TGGCCA 2 cut(s) 757, 1778
MluNI TGGCCA 2 cut(s) 757, 1778
Mox20I TGGCCA 2 cut(s) 757, 1778
Mph1103I ATGCAT 1 cut(s) 940
MroXI GAANNNNTTC 1 cut(s) 121
MscI TGGCCA 2 cut(s) 757, 1778
MseI TTAA 2 cut(s) 326, 825
MslI CAYNNNNRTG 1 cut(s) 957
Msp20I TGGCCA 2 cut(s) 757, 1778
MspA1I CMGCKG 2 cut(s) 177, 220
MspI CCGG 3 cut(s) 849, 1622, 1741
Mva1269I GAATGC 1 cut(s) 1024
MvnI CGCG 5 cut(s) 220, 231, 495, 1494, 1682
MwoI GCNNNNNNNGC 4 cut(s) 818, 1500, 1721, 1730
NcoI CCATGG 1 cut(s) 1638
NdeII GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
NlaIV GGNNCC 3 cut(s) 525, 911, 1869
NmuCI GTSAC 2 cut(s) 451, 1745
NruI TCGCGA 1 cut(s) 495
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 1 cut(s) 942
PaeI GCATGC 1 cut(s) 942
PagI TCATGA 1 cut(s) 1386
PctI GAATGC 1 cut(s) 1024
PdmI GAANNNNTTC 1 cut(s) 121
PfeI GAWTC 7 cut(s) 408, 995, 1009, 1129, 1312, 1447, 1667
PkrI GCNGC 6 cut(s) 46, 230, 433, 514, 1714, 1855
Ple19I CGATCG 1 cut(s) 782
Psp124BI GAGCTC 2 cut(s) 27, 577
PspN4I GGNNCC 3 cut(s) 525, 911, 1869
PspPI GGNCC 1 cut(s) 811
PstI CTGCAG 2 cut(s) 433, 1692
PsuI RGATCY 1 cut(s) 1429
PvuI CGATCG 1 cut(s) 782
RruI TCGCGA 1 cut(s) 495
RseI CAYNNNNRTG 1 cut(s) 957
SacI GAGCTC 2 cut(s) 27, 577
SacII CCGCGG 1 cut(s) 221
SaqAI TTAA 2 cut(s) 326, 825
SatI GCNGC 6 cut(s) 45, 229, 432, 513, 1713, 1854
Sau3AI GATC 9 cut(s) 70, 355, 446, 779, 1076, 1383, 1429, 1438, 1537
Sau96I GGNCC 1 cut(s) 811
ScaI AGTACT 2 cut(s) 52, 1290
SduI GDGCHC 2 cut(s) 27, 577
SfaNI GCATC 2 cut(s) 171, 1706
SfcI CTRYAG 2 cut(s) 429, 1688
Sfr303I CCGCGG 1 cut(s) 221
SgrBI CCGCGG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 246, 1655
SmoI CTYRAG 2 cut(s) 246, 1655
SphI GCATGC 1 cut(s) 942
SspI AATATT 3 cut(s) 752, 979, 1044
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 2 cut(s) 27, 577
StyI CCWWGG 5 cut(s) 126, 527, 758, 1638, 1779
TaaI ACNGT 6 cut(s) 209, 277, 309, 932, 1027, 1922
TatI WGTACW 6 cut(s) 50, 856, 927, 1070, 1195, 1288
TauI GCSGC 3 cut(s) 231, 1715, 1856
TfiI GAWTC 7 cut(s) 408, 995, 1009, 1129, 1312, 1447, 1667
Tru1I TTAA 2 cut(s) 326, 825
Tru9I TTAA 2 cut(s) 326, 825
TscAI CASTG 4 cut(s) 805, 1213, 1878, 1918
TseFI GTSAC 2 cut(s) 451, 1745
TseI GCWGC 3 cut(s) 44, 431, 512
Tsp45I GTSAC 2 cut(s) 451, 1745
TspDTI ATGAA 8 cut(s) 171, 321, 531, 941, 1008, 1022, 1403, 1540
TspGWI ACGGA 3 cut(s) 470, 1141, 1455
TspRI CASTG 4 cut(s) 805, 1213, 1878, 1918
XagI CCTNNNNNAGG 1 cut(s) 1658
XapI RAATTY 4 cut(s) 285, 506, 538, 599
XceI RCATGY 1 cut(s) 942
XmiI GTMKAC 2 cut(s) 64, 769
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 1 cut(s) 470
ZrmI AGTACT 2 cut(s) 52, 1290
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.