Rh5AG129000

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000119
Physical Location & Seq
Reverse (-)
12738453 .. 12739344
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG129000.1

Sequence Viewer

Length: 693 bp
ATGTCCATGGAGACTCAAAGGTGGGAGGACATAAGAAACAAGATACAATTGAAAGAGAAAGATATAGCAGGATGGATGGACAGAAATGAGCTTCCAGACAAAATGAAGAAAGAAATTATGAAGAACATAAAGCAAAAACTGGAAGAGAATAAAGATGCTGATCTTGAGAATCTTTTCTCTATTCTTCCGACGTATACCAAAAAGTGTCTGAAGCGTTTCCTCGGCATGAAACTGCTAAAGAAAGTACCGAAGCTTGCAAGGATGGATGAAAGAGTGTTGGAAATGATGTGTGACTATCTAAAGCCAGTGATGTATGCCGAGGATGCAGTGGTTTTACAAATGGAAGATCCACTACGTAGCATGCTACTCATTACAGAAGGCACATTATTGACCCATAGAACTACCAGTAATGATAGTCATGTTGCAACTGAAAACGCAAAAATGGGTAGTATTTCAAGTTCCCCATCAGTGGGTAACCTTGAAAAAGGTGACTTTTACGGCGCCGAAGAGCTGATCGAGTGGGTAACACAAAAGAAGGATTTAGGCCAGCTTCCCGGCTCTGCCTTCAATGTGAAATGCGATTCGAAAGTAGAAGGCTTTGTTCTCACAGCCAAGGACTTGAGAAGTGTAGTTTCCAAAAACGAAAACTGGTGGAAATTTGGCATTAGCAAGTCAGAGCACAGCATATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

230

Amino Acids

26.44

Weight (kDa)

7.61

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 500
AccI GTMKAC 1 cut(s) 194
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 656
AcuI CTGAAG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 469, 470
AgsI TTSAA 4 cut(s) 52, 456, 482, 568
AluBI AGCT 4 cut(s) 91, 253, 511, 550
AluI AGCT 4 cut(s) 91, 253, 511, 550
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 544
ApoI RAATTY 1 cut(s) 656
Asp700I GAANNNNTTC 2 cut(s) 173, 215
AspLEI GCGC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 1 cut(s) 500
AsuII TTCGAA 1 cut(s) 584
BanI GGYRCC 1 cut(s) 500
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
Bbv12I GWGCWC 1 cut(s) 681
BccI CCATC 4 cut(s) 66, 70, 256, 472
BceAI ACGGC 1 cut(s) 514
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 691
BfoI RGCGCY 1 cut(s) 504
Bme1390I CCNGG 1 cut(s) 555
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 2 cut(s) 145, 313
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 185, 640
BpuMI CCSGG 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 6, 220, 318, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 470
Bse1I ACTGG 4 cut(s) 144, 305, 405, 653
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 4 cut(s) 6, 220, 318, 612
BseGI GGATG 5 cut(s) 77, 81, 267, 271, 328
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 469, 470
BseNI ACTGG 4 cut(s) 144, 305, 405, 653
BshFI GGCC 1 cut(s) 546
BshNI GGYRCC 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 681
BsiSI CCGG 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 469, 470
BsmAI GTCTC 1 cut(s) 5
BsnI GGCC 1 cut(s) 546
Bsp119I TTCGAA 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 681
Bsp143I GATC 3 cut(s) 160, 346, 513
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 502
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 501
BspT104I TTCGAA 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 500
BsrI ACTGG 4 cut(s) 144, 305, 405, 653
BssECI CCNNGG 4 cut(s) 6, 220, 318, 612
BssMI GATC 3 cut(s) 160, 346, 513
BssNAI GTATAC 1 cut(s) 195
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 2 cut(s) 6, 612
Bst1107I GTATAC 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 138, 501
BstACI GRCGYC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 3 cut(s) 255, 362, 548
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 473
BstF5I GGATG 5 cut(s) 77, 81, 267, 271, 328
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 3 cut(s) 163, 349, 516
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 160, 346, 513
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 364
BstPI GGTNACC 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 553
BstSNI TACGTA 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 5 cut(s) 77, 81, 267, 271, 328
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 3 cut(s) 312, 333, 474
Cac8I GCNNGC 3 cut(s) 255, 362, 548
CfoI GCGC 1 cut(s) 503
Csp6I GTAC 1 cut(s) 245
CviAII CATG 4 cut(s) 7, 226, 361, 419
CviJI RGCY 9 cut(s) 91, 253, 304, 511, 546, 550, 558, 597, 611
CviKI_1 RGCY 9 cut(s) 91, 253, 304, 511, 546, 550, 558, 597, 611
CviQI GTAC 1 cut(s) 245
DinI GGCGCC 1 cut(s) 502
DpnI GATC 3 cut(s) 162, 348, 515
DpnII GATC 3 cut(s) 160, 346, 513
Eam1104I CTCTTC 2 cut(s) 138, 501
EarI CTCTTC 2 cut(s) 138, 501
Eco105I TACGTA 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 6, 612
Eco57I CTGAAG 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 473
EcoO65I GGTNACC 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 6, 612
EgeI GGCGCC 1 cut(s) 502
EheI GGCGCC 1 cut(s) 502
ErhI CCWWGG 2 cut(s) 6, 612
FaeI CATG 4 cut(s) 10, 229, 364, 422
FatI CATG 4 cut(s) 6, 225, 360, 418
FauNDI CATATG 1 cut(s) 686
FblI GTMKAC 1 cut(s) 194
FokI GGATG 5 cut(s) 84, 88, 274, 278, 335
FspBI CTAG 1 cut(s) 691
GlaI GCGC 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 504
HaeIII GGCC 1 cut(s) 546
HapII CCGG 1 cut(s) 555
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 4 cut(s) 10, 229, 364, 422
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 3 cut(s) 13, 169, 581
HpaII CCGG 1 cut(s) 555
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 189, 210, 676
Hpy188III TCNNGA 2 cut(s) 95, 164
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 4 cut(s) 371, 529, 574, 587
HpyCH4IV ACGT 2 cut(s) 191, 355
HpyCH4V TGCA 3 cut(s) 257, 326, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpySE526I ACGT 2 cut(s) 191, 355
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 4 cut(s) 10, 229, 364, 422
HspAI GCGC 1 cut(s) 501
KasI GGCGCC 1 cut(s) 500
Kzo9I GATC 3 cut(s) 160, 346, 513
LguI GCTCTTC 1 cut(s) 501
LpnPI CCDG 8 cut(s) 54, 108, 125, 318, 418, 560, 568, 634
LweI GCATC 2 cut(s) 145, 313
MaeI CTAG 1 cut(s) 691
MaeII ACGT 2 cut(s) 191, 355
MaeIII GTNAC 4 cut(s) 290, 473, 488, 523
MalI GATC 3 cut(s) 162, 348, 515
MboI GATC 3 cut(s) 160, 346, 513
MboII GAAGA 6 cut(s) 118, 133, 155, 176, 356, 518
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 3 cut(s) 47, 114, 656
Mly113I GGCGCC 1 cut(s) 501
MlyI GAGTC 1 cut(s) 7
MmeI TCCRAC 2 cut(s) 212, 258
MnlI CCTC 3 cut(s) 19, 230, 313
MroXI GAANNNNTTC 2 cut(s) 173, 215
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 1 cut(s) 555
MunI CAATTG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 323
NarI GGCGCC 1 cut(s) 501
NciI CCSGG 1 cut(s) 555
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 686
NdeII GATC 3 cut(s) 160, 346, 513
NlaIII CATG 4 cut(s) 10, 229, 364, 422
NlaIV GGNNCC 1 cut(s) 502
NmeAIII GCCGAG 2 cut(s) 201, 343
NmuCI GTSAC 2 cut(s) 290, 488
NspI RCATGY 1 cut(s) 364
NspV TTCGAA 1 cut(s) 584
PaeI GCATGC 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 501
PdmI GAANNNNTTC 2 cut(s) 173, 215
PfeI GAWTC 2 cut(s) 169, 581
PleI GAGTC 1 cut(s) 7
PluTI GGCGCC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 356
PspEI GGTNACC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 502
PsrI GAACNNNNNNTAC 2 cut(s) 442, 474
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 501
Sau3AI GATC 3 cut(s) 160, 346, 513
SchI GAGTC 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 681
SetI ASST 9 cut(s) 23, 93, 194, 255, 358, 480, 490, 513, 552
SfaNI GCATC 2 cut(s) 145, 313
SfoI GGCGCC 1 cut(s) 502
SfuI TTCGAA 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 164, 619
SmoI CTYRAG 2 cut(s) 164, 619
SnaBI TACGTA 1 cut(s) 356
SphI GCATGC 1 cut(s) 364
Sse9I AATT 3 cut(s) 47, 114, 656
SspDI GGCGCC 1 cut(s) 500
SspMI CTAG 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 553
StyI CCWWGG 2 cut(s) 6, 612
TaiI ACGT 2 cut(s) 194, 358
TaqI TCGA 2 cut(s) 516, 584
TasI AATT 3 cut(s) 47, 114, 656
TfiI GAWTC 2 cut(s) 169, 581
TscAI CASTG 3 cut(s) 312, 333, 474
TseFI GTSAC 2 cut(s) 290, 488
Tsp45I GTSAC 2 cut(s) 290, 488
TspDTI ATGAA 4 cut(s) 119, 134, 242, 282
TspRI CASTG 3 cut(s) 312, 333, 474
XapI RAATTY 1 cut(s) 656
XceI RCATGY 1 cut(s) 364
XmiI GTMKAC 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 173, 215
XspI CTAG 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.