Rh1CG421200

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000119
Physical Location & Seq
Reverse (-)
68057556 .. 68058413
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG421200.1

Sequence Viewer

Length: 780 bp
ATGTCTATGGGAACTGCAAAGTCAGAGGAGATAAGAAGGAAGATCAAATCAAAAAAGCAAGTTATGAAAGAGTGGATGGAGAAAAATTGCCTCCCTGCTAAGTTGAGGAAAGAAATCATGGCAAATATAAGAGAAAAATTAGAACAAGACAATCATGCTGACATGGGGGATCTGTACTCCATTCTTCCCTCGTCAACCAAAAAATCTCTAAAGCGTGCTCTCTGCATGAGTACACTGAGAAAAGTACCAAGGCTTGAAGGTATGAATCCAAAAGTTTTGAAAATGATATGTGACTATCTGAAGCCTGTGACATACCCTGAGCATCACTATGTTGCCAAGGTGGATGAACCAGTTGATCAGATGGTGCTTGTCAAAGAAGGAACTATGTGGATCTACTCGTCGAATACTAGTACTCCATCCAAGATCCACAGGACGGTTGAGAACGGTGGCATTTATGGAGATGAACAACTTCTGAGTTGGGCGTCGAAGGACATGCAACACGTCTCGTTTGTAAACGTCCCGATCTCAAAAGAAAATGTGAAATGTCATACAAAAGTGGAAGGGTTTGCTATCGCGGCCAAGGACTTGAAAGATGTGTCCACCAAGTGCAAAATGTTTTGGAATTACGATGATCCTCGAGAGGAGAGGGTGGCGAGCTCTACCATAGGAAGGACATTCCGTCGAAACCGCAATAACCCAAATAGGCCGGCTACCGTAGGAGTAGGAGCTGCGACCTCGTCAAGAACAGGAATTGAGTATCTGCAGATCGAGAGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

259

Amino Acids

29.6

Weight (kDa)

9.53

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 575
AciI CCGC 2 cut(s) 575, 688
AclWI GGATC 4 cut(s) 177, 398, 418, 626
AcoI YGGCCR 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 482
AdeI CACNNNGTG 1 cut(s) 606
AfaI GTAC 4 cut(s) 176, 232, 246, 412
AfiI CCNNNNNNNGG 2 cut(s) 433, 669
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 3 cut(s) 257, 280, 589
AhdI GACNNNNNGTC 1 cut(s) 678
AhlI ACTAGT 1 cut(s) 407
AjiI CACGTC 1 cut(s) 502
AluBI AGCT 2 cut(s) 657, 728
AluI AGCT 2 cut(s) 657, 728
Alw21I GWGCWC 2 cut(s) 220, 659
Alw26I GTCTC 1 cut(s) 508
AlwI GGATC 4 cut(s) 177, 398, 418, 626
Ama87I CYCGRG 1 cut(s) 636
AoxI GGCC 2 cut(s) 576, 704
ApeKI GCWGC 1 cut(s) 728
Asp700I GAANNNNTTC 1 cut(s) 468
AvaI CYCGRG 1 cut(s) 636
BanII GRGCYC 1 cut(s) 659
Bbv12I GWGCWC 2 cut(s) 220, 659
BbvI GCAGC 1 cut(s) 715
BccI CCATC 3 cut(s) 70, 355, 424
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 508
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 761
BisI GCNGC 2 cut(s) 576, 729
BlsI GCNGC 2 cut(s) 577, 730
BmcAI AGTACT 1 cut(s) 412
BmeRI GACNNNNNGTC 1 cut(s) 678
BmeT110I CYCGRG 1 cut(s) 636
BmgBI CACGTC 1 cut(s) 502
BmsI GCATC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 3 cut(s) 248, 336, 579
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 669
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 248, 336, 579
BseGI GGATG 3 cut(s) 81, 349, 416
BseLI CCNNNNNNNGG 2 cut(s) 433, 669
BseMII CTCAG 3 cut(s) 227, 309, 464
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 2 cut(s) 41, 656
BseXI GCAGC 1 cut(s) 715
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 2 cut(s) 578, 706
BsiHKAI GWGCWC 2 cut(s) 220, 659
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 1 cut(s) 707
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 433, 669
BsmAI GTCTC 1 cut(s) 508
BsmBI CGTCTC 1 cut(s) 508
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 2 cut(s) 578, 706
BsoBI CYCGRG 1 cut(s) 636
Bsp1286I GDGCHC 2 cut(s) 220, 659
Bsp143I GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
BspACI CCGC 2 cut(s) 575, 688
BspANI GGCC 2 cut(s) 578, 706
BspCNI CTCAG 3 cut(s) 228, 310, 465
BspFNI CGCG 1 cut(s) 575
BspMAI CTGCAG 1 cut(s) 765
BspPI GGATC 4 cut(s) 177, 398, 418, 626
BsrFI RCCGGY 1 cut(s) 706
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 706
BssECI CCNNGG 3 cut(s) 248, 336, 579
BssMI GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 3 cut(s) 248, 336, 579
Bst4CI ACNGT 3 cut(s) 436, 446, 715
BstACI GRCGYC 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 216, 655, 708
BstDEI CTNAG 4 cut(s) 99, 236, 318, 473
BstF5I GGATG 3 cut(s) 81, 349, 416
BstFNI CGCG 1 cut(s) 575
BstKTI GATC 8 cut(s) 45, 172, 358, 393, 426, 525, 634, 768
BstMAI GTCTC 1 cut(s) 508
BstMBI GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNSI RCATGY 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 761
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 715
BstX2I RGATCY 3 cut(s) 169, 390, 423
BstYI RGATCY 3 cut(s) 169, 390, 423
BsuRI GGCC 2 cut(s) 578, 706
BtrI CACGTC 1 cut(s) 502
BtsCI GGATG 3 cut(s) 81, 349, 416
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 3 cut(s) 216, 655, 708
Cfr10I RCCGGY 1 cut(s) 706
CseI GACGC 1 cut(s) 471
Csp6I GTAC 4 cut(s) 175, 231, 245, 411
CviAII CATG 5 cut(s) 118, 155, 163, 226, 493
CviJI RGCY 7 cut(s) 253, 304, 578, 657, 706, 710, 728
CviKI_1 RGCY 7 cut(s) 253, 304, 578, 657, 706, 710, 728
CviQI GTAC 4 cut(s) 175, 231, 245, 411
DdeI CTNAG 4 cut(s) 99, 236, 318, 473
DpnI GATC 8 cut(s) 44, 171, 357, 392, 425, 524, 633, 767
DpnII GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
DraIII CACNNNGTG 1 cut(s) 606
DriI GACNNNNNGTC 1 cut(s) 678
EaeI YGGCCR 1 cut(s) 576
Eam1105I GACNNNNNGTC 1 cut(s) 678
Ecl136II GAGCTC 1 cut(s) 657
Eco130I CCWWGG 3 cut(s) 248, 336, 579
Eco24I GRGCYC 1 cut(s) 659
Eco53kI GAGCTC 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 636
EcoICRI GAGCTC 1 cut(s) 657
EcoT14I CCWWGG 3 cut(s) 248, 336, 579
EcoT38I GRGCYC 1 cut(s) 659
ErhI CCWWGG 3 cut(s) 248, 336, 579
Esp3I CGTCTC 1 cut(s) 508
FaeI CATG 5 cut(s) 121, 158, 166, 229, 496
FaqI GGGAC 1 cut(s) 503
FatI CATG 5 cut(s) 117, 154, 162, 225, 492
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 576, 729
FokI GGATG 3 cut(s) 88, 356, 403
FriOI GRGCYC 1 cut(s) 659
Fsp4HI GCNGC 2 cut(s) 576, 729
FspBI CTAG 1 cut(s) 408
GluI GCNGC 2 cut(s) 576, 729
HaeIII GGCC 2 cut(s) 578, 706
HapII CCGG 1 cut(s) 707
HgaI GACGC 1 cut(s) 471
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 5 cut(s) 121, 158, 166, 229, 496
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 1 cut(s) 265
HpaII CCGG 1 cut(s) 707
Hpy166II GTNNAC 4 cut(s) 195, 233, 514, 600
Hpy188I TCNGA 4 cut(s) 25, 300, 360, 474
Hpy188III TCNNGA 4 cut(s) 520, 638, 741, 769
Hpy8I GTNNAC 4 cut(s) 195, 233, 514, 600
Hpy99I CGWCG 3 cut(s) 403, 487, 684
HpyAV CCTTC 6 cut(s) 30, 251, 371, 481, 554, 663
HpyCH4III ACNGT 3 cut(s) 436, 446, 715
HpyCH4IV ACGT 2 cut(s) 501, 516
HpyCH4V TGCA 5 cut(s) 17, 225, 496, 609, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 4 cut(s) 99, 236, 318, 473
HpySE526I ACGT 2 cut(s) 501, 516
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 5 cut(s) 121, 158, 166, 229, 496
KroI GCCGGC 1 cut(s) 706
KroNI GCCGGC 1 cut(s) 708
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
LmnI GCTCC 1 cut(s) 725
LpnPI CCDG 7 cut(s) 108, 318, 330, 363, 415, 720, 732
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 501, 516
MaeIII GTNAC 2 cut(s) 290, 307
MalI GATC 8 cut(s) 44, 171, 357, 392, 425, 524, 633, 767
MboI GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
MboII GAAGA 2 cut(s) 52, 176
MflI RGATCY 3 cut(s) 169, 390, 423
MhlI GDGCHC 2 cut(s) 220, 659
MluCI AATT 4 cut(s) 85, 137, 622, 750
MnlI CCTC 8 cut(s) 19, 99, 101, 199, 634, 639, 645, 745
MroNI GCCGGC 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 327
MspI CCGG 1 cut(s) 707
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 1 cut(s) 575
NaeI GCCGGC 1 cut(s) 708
NdeII GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
NgoMIV GCCGGC 1 cut(s) 706
NlaIII CATG 5 cut(s) 121, 158, 166, 229, 496
NmuCI GTSAC 2 cut(s) 290, 307
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 1 cut(s) 265
PflFI GACNNNGTC 1 cut(s) 736
PkrI GCNGC 2 cut(s) 577, 730
Psp124BI GAGCTC 1 cut(s) 659
PstI CTGCAG 1 cut(s) 765
PsuI RGATCY 3 cut(s) 169, 390, 423
PsyI GACNNNGTC 1 cut(s) 736
RsaI GTAC 4 cut(s) 176, 232, 246, 412
RsaNI GTAC 4 cut(s) 175, 231, 245, 411
RseI CAYNNNNRTG 1 cut(s) 327
SacI GAGCTC 1 cut(s) 659
SatI GCNGC 2 cut(s) 576, 729
Sau3AI GATC 8 cut(s) 42, 169, 355, 390, 423, 522, 631, 765
ScaI AGTACT 1 cut(s) 412
SduI GDGCHC 2 cut(s) 220, 659
SetI ASST 8 cut(s) 262, 342, 504, 519, 659, 730, 737, 779
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 761
Sfr274I CTCGAG 1 cut(s) 636
SlaI CTCGAG 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 4 cut(s) 85, 137, 622, 750
SsiI CCGC 2 cut(s) 575, 688
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 1 cut(s) 659
StyI CCWWGG 3 cut(s) 248, 336, 579
TaaI ACNGT 3 cut(s) 436, 446, 715
TaiI ACGT 2 cut(s) 504, 519
TaqI TCGA 5 cut(s) 401, 485, 637, 682, 768
TasI AATT 4 cut(s) 85, 137, 622, 750
TatI WGTACW 3 cut(s) 174, 230, 410
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 1 cut(s) 265
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 2 cut(s) 290, 307
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 290, 307
TspDTI ATGAA 4 cut(s) 80, 278, 360, 477
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 736
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 1 cut(s) 636
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 1 cut(s) 408
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.