Rorug02G0166500

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000119
Physical Location & Seq
Forward (+)
14902684 .. 14906796
4113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0166500.1

Sequence Viewer

Length: 2526 bp
ATGGCGGCGAACCTCGCTGCAGGTGGTGCTATGGGAGTACCATTTAATGCGCTCTATGAAGCCATTAAGCAAGTGGTGGTCAAGACTAGAATGTTTAAACCACTTGTTGAAGACCTGAGGTCGAAGATAAACGCCTTGAAACCCCTCATCGATGCAATGGAGATCTGCAATATAGCTCTGGGGATTTCAGAGGACGAACTTAGAGATTTCAAAATGCAAATGGAGAAGGGACCCAAGCTTATTCTCAAGTGTTCCAATCTTAGTGTATGGAAGACTTACAAAAAGTATAAATACAGTAACCAACTTCTTGAATTGCAGAACTCTCTTCAGAATCTGCTACTTGTACTGTCAGTGCAACAAGCAAGGGATGGGAAGGTGAACTTGGTTGCAACAAGGAATATAGAGACGGTGGTGCAGCGAGTGGATGTGAATGTTGCGGCATTGAGACAACACCAAGAGATGAATGTTACGAATCAATTAAGAAGCATAAGCAGTACCGCGATCCAGCATATTGAAAACCAAGGTCAGGTACAAAATCGAATAGATTGTGAAGCACCTGAACCGCCACGGGTTACAGTTGGATTGGAAGGGCCTTTGATGGAATTGAAGATGAAGCTTCTTAAGAATAATAATGTGTCAATGGTTGTGCTGACTGCTCCAGGAGGATCCGGGAAAACCACATTGGCCACAAAGTTTTGTCAAGATGAGGAAGTGAAAGATATATTCAAGAACAACATCTTCTTTGTCACTGTTTCAAAGAAGGCAAACTTCAACCTTATTGTACAAGGACTACATCAACGCAAGGGTACCGAAGTACCTACTTTCGAAGAAGAAGCAACTGCCCTCAAGTGGTTGCATAAGTATCTGAAGGAAGAAGGACAGACACCTGTACTGTTGGTCCTGGATGATGTTTGGCCTGAATCAAAATCTCTTCTTGAAATTTTTGATGAAGTGAAAGGGCCGAATTTCAAGATTTTGGTGACATCAAGATCACAATTTGCAGGATATGGTTCTCTATACACACTAAAATCATTGAATGAGGCAGATGCGATGACTCTTTTCCGTAATTCAGCATCCCTGGGAGATGGGAGCTCTAGTGTTCAATGGACCAAACTTATTACAAAGATAGTAGAGCGCTGTAAGGGACATCCACTTGCCATTAAAGTGGTCGGAAAATCTCTTCGCGGACAATCTTTTGAGTTCTGGAGGAAAAGAGAAATGGAGTGGTCTAAAGGTGATTCTATTATTGATTCTGAAACTGAAGTGCTTCGTTCCCTTCAAAGTAGCTTCGATGCCTTGGATGAAAAAGGAGCTATCATAAAGGAATGTTTTTTAGACCTTGGTTCATTTCCTGAAGACCAAAGAATTCCTGTTGCTGCTCTAATTGATATGTGGGCAGAGTTGCATGAGCTAGATAAAGATTTCCTGGCTGTTACACACCTGCAAGAGCTTACCACACGAAGTCTTGCTGATCTAGTCACAAGGAAAGATGCAGTGGAGGGTGATGAGTACTACAATGAACACTTCGTCACTCAACATGACTTGCTTAGAGAGCTGGCTATCTACCAAACCAAGTTAGATCCAAATAAACAAAGACTGATAATAGGCAACAATGGAGACGATCTACCCAAGTGCTTGAGAGAACAAACGGATCGACCCATCAAGCCTCGCCTATTATCTATCTCCTCTGATGGAGTGTTCTCAACAAGTTTGCACAACATTGAACTAGCAGAGGTTGAAGTTCTGGTTTTGAATTTCGACACAAAGGACTATGCATTTCCCGGATTTGTGGAGAAAATGGACAATCTGAAGGTTCTAATAGTCACAAATAATGGTTTCTTACCTGCTGAGCTGAGTAATTTTCACCTACTGGATTCTTTATCAAATCTGAAGAGAATCAGATTAGAGCGTGTTTCAATTCCTTCCATAACCAAGAACCCCCTACAGTTGAAGAGTCTAAAGAAGATCTCGTTATTCATGTGTAGCATCGGAGAAGCTTTCAATTGTTCCTTCCGAGTTTCACATGCATTTCCAAATTTAGAGGAAATGCATATTGACTATTGCAATGATTTGGTGGAATTACCTGATGAGCTATGCAATCTGGTTCGCCTAAACAAGCTCAGTATCACACACTGTCCTATTCTATCTGCCTTGCCTGAAAAGATTGGAGAGTTGGAAAACTTGGAAGTGTTGAGGCTAAGGTCCTGCACAGATTTAGCAGAATTGCCAAGCTCAACTACCAACCTCAAGAAGTTAAACTTTCTTGACATATCCTATTGCTTGAGCATCAAGGAACTGCCTAAACAGATTGGAGAAATGAGCAGTTTAATTAGGATCAATATGAGAGAATGCTCAAGATTGAAGGCACTGCCTATATCAATTTGTGATCTTGAGAATAATCTAGAGGAAGTGATATGCGATGACGAGACAGAAGAGTTGTGGGAACCCTTCTTACCTAGACTGAACAAAGGAGTGGTAAGGGCTGTCGAGGAAGAATTCAACCTAACTTGGCTCCAAAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

841

Amino Acids

95.23

Weight (kDa)

5.64

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 3 - 136 3.5e-23 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 198 - 357 1e-16 NB-ARC domain
LRR_14 PF23598 674 - 784 2.4e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 11, 1449
Acc36I ACCTGC 3 cut(s) 11, 1449, 1852
Acc65I GGTACC 1 cut(s) 806
AccB1I GGYRCC 1 cut(s) 806
AccII CGCG 2 cut(s) 500, 1185
AciI CCGC 5 cut(s) 5, 437, 498, 563, 1185
AclWI GGATC 6 cut(s) 496, 660, 673, 1574, 1659, 2342
AcoI YGGCCR 1 cut(s) 684
AcsI RAATTY 6 cut(s) 939, 964, 1365, 1753, 2035, 2495
AcuI CTGAAG 6 cut(s) 311, 887, 1281, 1374, 1829, 1910
AfaI GTAC 9 cut(s) 39, 345, 496, 531, 783, 808, 816, 891, 1511
AfeI AGCGCT 1 cut(s) 1136
AfiI CCNNNNNNNGG 2 cut(s) 526, 849
AflII CTTAAG 1 cut(s) 620
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 4 cut(s) 658, 900, 1077, 1425
AjuI GAANNNNNNNTTGG 4 cut(s) 365, 397, 665, 697
Alw21I GWGCWC 1 cut(s) 1094
Alw26I GTCTC 4 cut(s) 398, 439, 1611, 2420
AlwI GGATC 6 cut(s) 496, 660, 673, 1574, 1659, 2342
AlwNI CAGNNNCTG 1 cut(s) 334
Aor51HI AGCGCT 1 cut(s) 1136
AoxI GGCC 4 cut(s) 590, 684, 914, 959
ApeKI GCWGC 3 cut(s) 17, 415, 1376
ApoI RAATTY 6 cut(s) 939, 964, 1365, 1753, 2035, 2495
Asp700I GAANNNNTTC 1 cut(s) 1266
Asp718I GGTACC 1 cut(s) 806
AspLEI GCGC 2 cut(s) 52, 1137
AspS9I GGNCC 6 cut(s) 230, 590, 898, 959, 1107, 2202
AsuC2I CCSGG 2 cut(s) 670, 1782
AsuHPI GGTGA 5 cut(s) 388, 991, 1247, 1514, 1856
AsuII TTCGAA 1 cut(s) 825
AvaII GGWCC 4 cut(s) 230, 898, 1107, 2202
AxyI CCTNAGG 1 cut(s) 116
BaeI ACNNNNGTAYC 4 cut(s) 798, 798, 831, 831
BalI TGGCCA 1 cut(s) 686
BamHI GGATCC 1 cut(s) 665
BanI GGYRCC 1 cut(s) 806
BanII GRGCYC 1 cut(s) 1094
BbsI GAAGAC 3 cut(s) 117, 278, 1362
Bbv12I GWGCWC 1 cut(s) 1094
BbvI GCAGC 3 cut(s) 4, 427, 1363
BccI CCATC 5 cut(s) 362, 592, 1079, 1667, 1685
BciT130I CCWGG 4 cut(s) 660, 902, 1079, 1427
BcnI CCSGG 2 cut(s) 670, 1782
BcoDI GTCTC 4 cut(s) 398, 439, 1611, 2420
BfaI CTAG 7 cut(s) 87, 1095, 1412, 1475, 1727, 2402, 2457
BfmI CTRYAG 2 cut(s) 18, 1943
BfoI RGCGCY 1 cut(s) 1138
BfrI CTTAAG 1 cut(s) 620
BfuAI ACCTGC 3 cut(s) 11, 1449, 1852
BglII AGATCT 2 cut(s) 162, 1965
BisI GCNGC 5 cut(s) 6, 18, 416, 438, 1377
BlpI GCTNAGC 1 cut(s) 1848
BlsI GCNGC 5 cut(s) 7, 19, 417, 439, 1378
BmcAI AGTACT 1 cut(s) 1511
Bme1390I CCNGG 6 cut(s) 660, 670, 902, 1079, 1427, 1782
Bme18I GGWCC 4 cut(s) 230, 898, 1107, 2202
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgT120I GGNCC 6 cut(s) 230, 590, 898, 959, 1107, 2202
BmiI GGNNCC 6 cut(s) 231, 232, 667, 808, 2445, 2513
BmrFI CCNGG 6 cut(s) 660, 670, 902, 1079, 1427, 1782
BmsI GCATC 7 cut(s) 142, 1036, 1082, 1282, 1480, 1995, 2295
BpiI GAAGAC 3 cut(s) 117, 278, 1362
BpmI CTGGAG 2 cut(s) 642, 1225
Bpu10I CCTNAGC 1 cut(s) 2198
Bpu1102I GCTNAGC 1 cut(s) 1848
Bpu14I TTCGAA 1 cut(s) 825
BpuEI CTTGAG 7 cut(s) 230, 830, 1657, 2231, 2302, 2338, 2411
BpuMI CCSGG 2 cut(s) 670, 1782
Bsa29I ATCGAT 1 cut(s) 150
BsaJI CCNNGG 6 cut(s) 520, 566, 1077, 1078, 1296, 1339
BsaXI ACNNNNNCTCC 2 cut(s) 1081, 1111
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 849
Bse1I ACTGG 1 cut(s) 1875
Bse21I CCTNAGG 1 cut(s) 116
Bse3DI GCAATG 2 cut(s) 162, 2071
BseBI CCWGG 4 cut(s) 660, 902, 1079, 1427
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 6 cut(s) 520, 566, 1077, 1078, 1296, 1339
BseGI GGATG 6 cut(s) 373, 430, 910, 1073, 1147, 1306
BseLI CCNNNNNNNGG 2 cut(s) 526, 849
BseMI GCAATG 2 cut(s) 162, 2071
BseMII CTCAG 4 cut(s) 107, 1839, 1844, 2134
BseNI ACTGG 1 cut(s) 1875
BseRI GAGGAG 1 cut(s) 1675
BseXI GCAGC 3 cut(s) 4, 427, 1363
BsgI GTGCAG 2 cut(s) 434, 2191
Bsh1236I CGCG 2 cut(s) 500, 1185
BshFI GGCC 4 cut(s) 592, 686, 916, 961
BshNI GGYRCC 1 cut(s) 806
BshVI ATCGAT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 1094
BsiSI CCGG 2 cut(s) 669, 1782
BslFI GGGAC 2 cut(s) 243, 1158
BslI CCNNNNNNNGG 2 cut(s) 526, 849
BsmAI GTCTC 4 cut(s) 398, 439, 1611, 2420
BsmBI CGTCTC 2 cut(s) 398, 1611
BsmFI GGGAC 2 cut(s) 243, 1158
BsmI GAATGC 1 cut(s) 2354
BsnI GGCC 4 cut(s) 592, 686, 916, 961
Bsp119I TTCGAA 1 cut(s) 825
Bsp1286I GDGCHC 1 cut(s) 1094
Bsp1407I TGTACA 1 cut(s) 781
Bsp1720I GCTNAGC 1 cut(s) 1848
BspACI CCGC 5 cut(s) 5, 437, 498, 563, 1185
BspANI GGCC 4 cut(s) 592, 686, 916, 961
BspCNI CTCAG 4 cut(s) 108, 1840, 1845, 2133
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 2 cut(s) 500, 1185
BspLI GGNNCC 6 cut(s) 231, 232, 667, 808, 2445, 2513
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 3 cut(s) 11, 1449, 1852
BspPI GGATC 6 cut(s) 496, 660, 673, 1574, 1659, 2342
BspT104I TTCGAA 1 cut(s) 825
BspT107I GGYRCC 1 cut(s) 806
BspTI CTTAAG 1 cut(s) 620
BsrDI GCAATG 2 cut(s) 162, 2071
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 1 cut(s) 1875
BssECI CCNNGG 6 cut(s) 520, 566, 1077, 1078, 1296, 1339
BssT1I CCWWGG 3 cut(s) 520, 1296, 1339
Bst2UI CCWGG 4 cut(s) 660, 902, 1079, 1427
Bst4CI ACNGT 8 cut(s) 296, 348, 409, 577, 751, 894, 1947, 2135
Bst6I CTCTTC 6 cut(s) 330, 936, 1185, 1886, 1946, 2427
BstAFI CTTAAG 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 781
BstBI TTCGAA 1 cut(s) 825
BstC8I GCNNGC 1 cut(s) 1557
BstDEI CTNAG 8 cut(s) 116, 200, 260, 1547, 1848, 1853, 2120, 2198
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 6 cut(s) 373, 430, 910, 1073, 1147, 1306
BstFNI CGCG 2 cut(s) 500, 1185
BstH2I RGCGCY 1 cut(s) 1138
BstHHI GCGC 2 cut(s) 52, 1137
BstMAI GTCTC 4 cut(s) 398, 439, 1611, 2420
BstMWI GCNNNNNNNGC 3 cut(s) 14, 26, 1552
BstNI CCWGG 4 cut(s) 660, 902, 1079, 1427
BstNSI RCATGY 1 cut(s) 2027
BstSCI CCNGG 6 cut(s) 658, 668, 900, 1077, 1425, 1780
BstSFI CTRYAG 2 cut(s) 18, 1943
BstUI CGCG 2 cut(s) 500, 1185
BstV1I GCAGC 3 cut(s) 4, 427, 1363
BstV2I GAAGAC 3 cut(s) 117, 278, 1362
BstX2I RGATCY 4 cut(s) 162, 665, 1579, 1965
BstXI CCANNNNNNTGG 1 cut(s) 1165
BstYI RGATCY 4 cut(s) 162, 665, 1579, 1965
Bsu15I ATCGAT 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 116
BsuRI GGCC 4 cut(s) 592, 686, 916, 961
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 566
BtgZI GCGATG 2 cut(s) 1064, 2433
BtsCI GGATG 6 cut(s) 373, 430, 910, 1073, 1147, 1306
BtsI GCAGTG 2 cut(s) 1500, 2366
BtsIMutI CAGTG 5 cut(s) 357, 747, 1500, 2131, 2366
BveI ACCTGC 3 cut(s) 11, 1449, 1852
Cac8I GCNNGC 1 cut(s) 1557
CaiI CAGNNNCTG 1 cut(s) 334
CfoI GCGC 2 cut(s) 52, 1137
Cfr13I GGNCC 6 cut(s) 230, 590, 898, 959, 1107, 2202
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 9 cut(s) 38, 344, 495, 530, 782, 807, 815, 890, 1510
CviAII CATG 4 cut(s) 1406, 1538, 1978, 2024
CviQI GTAC 9 cut(s) 38, 344, 495, 530, 782, 807, 815, 890, 1510
DdeI CTNAG 8 cut(s) 116, 200, 260, 1547, 1848, 1853, 2120, 2198
DraI TTTAAA 1 cut(s) 97
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 684
Eam1104I CTCTTC 6 cut(s) 330, 936, 1185, 1886, 1946, 2427
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 6 cut(s) 330, 936, 1185, 1886, 1946, 2427
Ecl136II GAGCTC 1 cut(s) 1092
Eco130I CCWWGG 3 cut(s) 520, 1296, 1339
Eco24I GRGCYC 1 cut(s) 1094
Eco47I GGWCC 4 cut(s) 230, 898, 1107, 2202
Eco47III AGCGCT 1 cut(s) 1136
Eco53kI GAGCTC 1 cut(s) 1092
Eco57I CTGAAG 6 cut(s) 311, 887, 1281, 1374, 1829, 1910
Eco81I CCTNAGG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 1092
EcoO109I RGGNCCY 3 cut(s) 230, 590, 2202
EcoRI GAATTC 2 cut(s) 1365, 2495
EcoRII CCWGG 4 cut(s) 658, 900, 1077, 1425
EcoT14I CCWWGG 3 cut(s) 520, 1296, 1339
EcoT22I ATGCAT 3 cut(s) 1777, 2029, 2052
EcoT38I GRGCYC 1 cut(s) 1094
ErhI CCWWGG 3 cut(s) 520, 1296, 1339
Esp3I CGTCTC 2 cut(s) 398, 1611
FaeI CATG 4 cut(s) 1409, 1541, 1981, 2027
FalI AAGNNNNNCTT 6 cut(s) 365, 397, 752, 784, 2243, 2275
FaqI GGGAC 2 cut(s) 243, 1158
FatI CATG 4 cut(s) 1405, 1537, 1977, 2023
Fnu4HI GCNGC 5 cut(s) 6, 18, 416, 438, 1377
FokI GGATG 6 cut(s) 380, 437, 917, 1060, 1134, 1313
FriOI GRGCYC 1 cut(s) 1094
Fsp4HI GCNGC 5 cut(s) 6, 18, 416, 438, 1377
FspBI CTAG 7 cut(s) 87, 1095, 1412, 1475, 1727, 2402, 2457
GlaI GCGC 2 cut(s) 51, 1136
GluI GCNGC 5 cut(s) 6, 18, 416, 438, 1377
GsuI CTGGAG 2 cut(s) 642, 1225
HaeII RGCGCY 1 cut(s) 1138
HaeIII GGCC 4 cut(s) 592, 686, 916, 961
HapII CCGG 2 cut(s) 669, 1782
HhaI GCGC 2 cut(s) 52, 1137
Hin1II CATG 4 cut(s) 1409, 1541, 1981, 2027
Hin6I GCGC 2 cut(s) 50, 1135
HinP1I GCGC 2 cut(s) 50, 1135
HindIII AAGCTT 3 cut(s) 236, 614, 1995
HinfI GANTC 9 cut(s) 331, 472, 920, 1054, 1238, 1250, 1874, 1896, 1954
HpaII CCGG 2 cut(s) 669, 1782
HphI GGTGA 5 cut(s) 388, 991, 1247, 1514, 1856
Hpy166II GTNNAC 1 cut(s) 379
Hpy8I GTNNAC 1 cut(s) 379
HpyCH4III ACNGT 8 cut(s) 296, 348, 409, 577, 751, 894, 1947, 2135
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 26, 1552
HpyF3I CTNAG 8 cut(s) 116, 200, 260, 1547, 1848, 1853, 2120, 2198
Hsp92II CATG 4 cut(s) 1409, 1541, 1981, 2027
HspAI GCGC 2 cut(s) 50, 1135
KflI GGGWCCC 1 cut(s) 230
KpnI GGTACC 1 cut(s) 810
LmnI GCTCC 4 cut(s) 661, 1089, 1310, 2517
Lsp1109I GCAGC 3 cut(s) 4, 427, 1363
LweI GCATC 7 cut(s) 142, 1036, 1082, 1282, 1480, 1995, 2295
MaeI CTAG 7 cut(s) 87, 1095, 1412, 1475, 1727, 2402, 2457
MaeIII GTNAC 9 cut(s) 296, 466, 571, 745, 979, 1432, 1477, 1528, 1822
MfeI CAATTG 1 cut(s) 2002
MflI RGATCY 4 cut(s) 162, 665, 1579, 1965
MhlI GDGCHC 1 cut(s) 1094
MlsI TGGCCA 1 cut(s) 686
MluNI TGGCCA 1 cut(s) 686
MlyI GAGTC 2 cut(s) 1048, 1963
MmeI TCCRAC 3 cut(s) 559, 1150, 2154
Mox20I TGGCCA 1 cut(s) 686
Mph1103I ATGCAT 3 cut(s) 1777, 2029, 2052
MroXI GAANNNNTTC 1 cut(s) 1266
MscI TGGCCA 1 cut(s) 686
MseI TTAA 8 cut(s) 45, 66, 96, 479, 621, 1161, 2255, 2327
MslI CAYNNNNRTG 1 cut(s) 1163
Msp20I TGGCCA 1 cut(s) 686
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 2 cut(s) 669, 1782
MspR9I CCNGG 6 cut(s) 660, 670, 902, 1079, 1427, 1782
MssI GTTTAAAC 1 cut(s) 97
MunI CAATTG 1 cut(s) 2002
Mva1269I GAATGC 1 cut(s) 2354
MvaI CCWGG 4 cut(s) 660, 902, 1079, 1427
MvnI CGCG 2 cut(s) 500, 1185
MwoI GCNNNNNNNGC 3 cut(s) 14, 26, 1552
NciI CCSGG 2 cut(s) 670, 1782
NlaIII CATG 4 cut(s) 1409, 1541, 1981, 2027
NlaIV GGNNCC 6 cut(s) 231, 232, 667, 808, 2445, 2513
NmuCI GTSAC 5 cut(s) 745, 979, 1477, 1528, 1822
NsiI ATGCAT 3 cut(s) 1777, 2029, 2052
NspI RCATGY 1 cut(s) 2027
NspV TTCGAA 1 cut(s) 825
PaqCI CACCTGC 2 cut(s) 11, 1449
PasI CCCWGGG 1 cut(s) 1078
PctI GAATGC 1 cut(s) 2354
PdmI GAANNNNTTC 1 cut(s) 1266
PfeI GAWTC 7 cut(s) 331, 472, 920, 1238, 1250, 1874, 1896
PfoI TCCNGGA 4 cut(s) 658, 668, 900, 1780
PkrI GCNGC 5 cut(s) 7, 19, 417, 439, 1378
PleI GAGTC 2 cut(s) 1048, 1962
PmeI GTTTAAAC 1 cut(s) 97
PpsI GAGTC 2 cut(s) 1048, 1962
PpuMI RGGWCCY 2 cut(s) 230, 2202
Psp124BI GAGCTC 1 cut(s) 1094
Psp5II RGGWCCY 2 cut(s) 230, 2202
Psp6I CCWGG 4 cut(s) 658, 900, 1077, 1425
PspGI CCWGG 4 cut(s) 658, 900, 1077, 1425
PspN4I GGNNCC 6 cut(s) 231, 232, 667, 808, 2445, 2513
PspPI GGNCC 6 cut(s) 230, 590, 898, 959, 1107, 2202
PspPPI RGGWCCY 2 cut(s) 230, 2202
PsrI GAACNNNNNNTAC 2 cut(s) 2436, 2468
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 334
PsuI RGATCY 4 cut(s) 162, 665, 1579, 1965
RsaI GTAC 9 cut(s) 39, 345, 496, 531, 783, 808, 816, 891, 1511
RsaNI GTAC 9 cut(s) 38, 344, 495, 530, 782, 807, 815, 890, 1510
RseI CAYNNNNRTG 1 cut(s) 1163
SacI GAGCTC 1 cut(s) 1094
SaqAI TTAA 8 cut(s) 45, 66, 96, 479, 621, 1161, 2255, 2327
SatI GCNGC 5 cut(s) 6, 18, 416, 438, 1377
Sau96I GGNCC 6 cut(s) 230, 590, 898, 959, 1107, 2202
ScaI AGTACT 1 cut(s) 1511
SchI GAGTC 2 cut(s) 1048, 1963
ScrFI CCNGG 6 cut(s) 660, 670, 902, 1079, 1427, 1782
SduI GDGCHC 1 cut(s) 1094
SfaNI GCATC 7 cut(s) 142, 1036, 1082, 1282, 1480, 1995, 2295
SfcI CTRYAG 2 cut(s) 18, 1943
SfuI TTCGAA 1 cut(s) 825
SinI GGWCC 4 cut(s) 230, 898, 1107, 2202
SmiMI CAYNNNNRTG 1 cut(s) 1163
SmlI CTYRAG 8 cut(s) 245, 620, 845, 1636, 2246, 2281, 2353, 2390
SmoI CTYRAG 8 cut(s) 245, 620, 845, 1636, 2246, 2281, 2353, 2390
SsiI CCGC 5 cut(s) 5, 437, 498, 563, 1185
SspMI CTAG 7 cut(s) 87, 1095, 1412, 1475, 1727, 2402, 2457
SstI GAGCTC 1 cut(s) 1094
StyD4I CCNGG 6 cut(s) 658, 668, 900, 1077, 1425, 1780
StyI CCWWGG 3 cut(s) 520, 1296, 1339
TaaI ACNGT 8 cut(s) 296, 348, 409, 577, 751, 894, 1947, 2135
TaqI TCGA 8 cut(s) 122, 150, 538, 825, 1290, 1654, 1758, 2487
TatI WGTACW 4 cut(s) 343, 781, 889, 1509
TauI GCSGC 2 cut(s) 8, 440
TfiI GAWTC 7 cut(s) 331, 472, 920, 1238, 1250, 1874, 1896
Tru1I TTAA 8 cut(s) 45, 66, 96, 479, 621, 1161, 2255, 2327
Tru9I TTAA 8 cut(s) 45, 66, 96, 479, 621, 1161, 2255, 2327
TscAI CASTG 5 cut(s) 357, 754, 1500, 2138, 2373
TseFI GTSAC 5 cut(s) 745, 979, 1477, 1528, 1822
TseI GCWGC 3 cut(s) 17, 415, 1376
Tsp45I GTSAC 5 cut(s) 745, 979, 1477, 1528, 1822
TspDTI ATGAA 8 cut(s) 72, 476, 626, 963, 1317, 1335, 1533, 1966
TspGWI ACGGA 2 cut(s) 1052, 1664
TspRI CASTG 5 cut(s) 357, 754, 1500, 2138, 2373
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 4 cut(s) 230, 898, 1107, 2202
XapI RAATTY 6 cut(s) 939, 964, 1365, 1753, 2035, 2495
XbaI TCTAGA 1 cut(s) 2401
XceI RCATGY 1 cut(s) 2027
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 1266
XspI CTAG 7 cut(s) 87, 1095, 1412, 1475, 1727, 2402, 2457
ZrmI AGTACT 1 cut(s) 1511
Zsp2I ATGCAT 3 cut(s) 1777, 2029, 2052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.