Rorug01G0427100

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000119
Physical Location & Seq
Reverse (-)
52697997 .. 52699568
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0427100.1

Sequence Viewer

Length: 1017 bp
ATGCGCCGGTCACCGGCTCCGTTGCTCCTCTCCCTCCTCACCCTACTCTCCCTACTCCTCTCCGCCGCTTCATGGCGGCCCTGGCCCCACCTCAAGGCCAACAACACTGACCTCGCCCTCGGCAACAACAAAAAATTCGAAGGCTCCTCCGACTTTGTCCACCTTAAATACCACATGGGGCCGGTCCTCACTGCCGACATAACCGTCCACACAATCTGGTACGGCACGTGGCAGCGCCGCCAGAAGAAGATCATTCGTGAGTTCCTCAGCTCCATCTCCGCCGCCGACTCCAAGCCCCCCTCCGTCGCCGGCTGGTGGAAGACCGTACAGCTCTACACCGACCAGACCGGCCAGAACGTCTCCCGCACCGTCCACCTCGGCGCCGAGAAAAACGACCGCTTCTACTCCCACGGCAAATCCCTCACCCGCCTCTCCATCCAGTCCGTCATCAAGTCCGCCGTCACCGCCAAAACCCGCCCCTTACCCACCAACCCTCAGGGCGGCCTCTACCTCCTGCTGACGTCAGACGACGTCACCGTCCAGGACTTCTGCGGCCAGGTCTGCGGCTTCCACTACTTCACGTTCCCGTCCATCGTCGGCTACACTCTGCCGTACGCGTGGGTCGGGAACTCCGCGAAGCTCTGCCCCGGGGTCTGCGCGTACCCGTACGCCGTGCCGGAGTACATGCCGGGGCTGAAGCCGTTCAAGTCTCCGAACGGCGACGTCGGCGTGGAGGGGATGATAAGCGTTATAGCTCACGAGATTGCCGAGCTGGCCAGCAACCCTCTAGTGAACGCTTGGTACGCCGGCCAGGACCCCAGTTTTCCGGTGGAGATCGCCGACCTCTGCGAGGGGATCTACGGCACCGGAGGAGGGGGGTCGTACACGGGGCAGCTGATGGACGACCACGACGGCGCCACGTACAACATGAACGGAATCCGGCGCAAGTTTTTGGTGCAGTGGATTTGGAGTCACGTTTTGAGTTACTGTACCGGACCTAATGCACTCGACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

338

Amino Acids

37.23

Weight (kDa)

8.42

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 55 - 332 4.9e-101 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 203, 536
AatII GACGTC 3 cut(s) 524, 534, 726
AccB1I GGYRCC 3 cut(s) 380, 863, 914
AccII CGCG 3 cut(s) 617, 635, 659
AclWI GGATC 1 cut(s) 863
AcoI YGGCCR 4 cut(s) 349, 553, 774, 808
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 716
AcvI CACGTG 1 cut(s) 228
AcyI GRCGYC 5 cut(s) 381, 521, 531, 723, 915
AfiI CCNNNNNNNGG 7 cut(s) 13, 72, 94, 315, 500, 850, 873
AflIII ACRYGT 1 cut(s) 615
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 4 cut(s) 80, 540, 555, 810
AluBI AGCT 6 cut(s) 270, 331, 640, 755, 772, 895
AluI AGCT 6 cut(s) 270, 331, 640, 755, 772, 895
Alw26I GTCTC 2 cut(s) 364, 714
AlwI GGATC 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 647
AoxI GGCC 9 cut(s) 77, 83, 96, 179, 349, 502, 553, 774, 808
ApeKI GCWGC 2 cut(s) 232, 892
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 6 cut(s) 6, 237, 383, 659, 917, 945
AspS9I GGNCC 6 cut(s) 78, 84, 179, 184, 814, 995
AsuC2I CCSGG 3 cut(s) 648, 649, 690
AsuHPI GGTGA 5 cut(s) 3, 31, 415, 454, 526
AsuII TTCGAA 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 647
AvaII GGWCC 3 cut(s) 184, 814, 995
AxyI CCTNAGG 1 cut(s) 495
BalI TGGCCA 1 cut(s) 776
BanI GGYRCC 3 cut(s) 380, 863, 914
BauI CACGAG 1 cut(s) 758
BbrPI CACGTG 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 244, 904
BccI CCATC 4 cut(s) 281, 443, 599, 892
BceAI ACGGC 9 cut(s) 238, 427, 443, 595, 656, 685, 733, 877, 928
BciT130I CCWGG 4 cut(s) 82, 542, 557, 812
BcnI CCSGG 3 cut(s) 648, 649, 690
BcoDI GTCTC 2 cut(s) 364, 714
BfaI CTAG 1 cut(s) 788
BfoI RGCGCY 3 cut(s) 238, 384, 918
BglI GCCNNNNNGGC 1 cut(s) 773
BisI GCNGC 9 cut(s) 66, 77, 233, 238, 282, 502, 553, 565, 893
BlsI GCNGC 9 cut(s) 67, 78, 234, 239, 283, 503, 554, 566, 894
Bme1390I CCNGG 7 cut(s) 82, 542, 557, 648, 649, 690, 812
Bme18I GGWCC 3 cut(s) 184, 814, 995
BmeT110I CYCGRG 1 cut(s) 647
BmgT120I GGNCC 6 cut(s) 78, 84, 179, 184, 814, 995
BmiI GGNNCC 8 cut(s) 18, 86, 145, 180, 382, 816, 865, 916
BmrFI CCNGG 7 cut(s) 82, 542, 557, 648, 649, 690, 812
BmrI ACTGGG 1 cut(s) 813
BmuI ACTGGG 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 3 cut(s) 648, 649, 690
BsaAI YACGTR 2 cut(s) 228, 921
BsaHI GRCGYC 5 cut(s) 381, 521, 531, 723, 915
BsaJI CCNNGG 8 cut(s) 80, 118, 376, 409, 646, 647, 648, 689
BsaWI WCCGGW 3 cut(s) 826, 866, 992
Bsc4I CCNNNNNNNGG 7 cut(s) 13, 72, 94, 315, 500, 850, 873
Bse118I RCCGGY 6 cut(s) 6, 13, 181, 308, 347, 806
Bse1I ACTGG 3 cut(s) 439, 819, 1012
Bse21I CCTNAGG 1 cut(s) 495
BseBI CCWGG 4 cut(s) 82, 542, 557, 812
BseDI CCNNGG 8 cut(s) 80, 118, 376, 409, 646, 647, 648, 689
BseGI GGATG 2 cut(s) 435, 744
BseLI CCNNNNNNNGG 7 cut(s) 13, 72, 94, 315, 500, 850, 873
BseMII CTCAG 2 cut(s) 280, 509
BseNI ACTGG 3 cut(s) 439, 819, 1012
BseRI GAGGAG 5 cut(s) 17, 26, 47, 136, 885
BseXI GCAGC 2 cut(s) 244, 904
BsgI GTGCAG 1 cut(s) 977
Bsh1236I CGCG 3 cut(s) 617, 635, 659
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 9 cut(s) 79, 85, 98, 181, 351, 504, 555, 776, 810
BshNI GGYRCC 3 cut(s) 380, 863, 914
BsiEI CGRYCG 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 647
BsiWI CGTACG 2 cut(s) 612, 666
BslI CCNNNNNNNGG 7 cut(s) 13, 72, 94, 315, 500, 850, 873
BsmAI GTCTC 2 cut(s) 364, 714
BsmBI CGTCTC 1 cut(s) 364
BsnI GGCC 9 cut(s) 79, 85, 98, 181, 351, 504, 555, 776, 810
BsoBI CYCGRG 1 cut(s) 647
Bsp119I TTCGAA 1 cut(s) 138
Bsp143I GATC 3 cut(s) 249, 834, 855
BspANI GGCC 9 cut(s) 79, 85, 98, 181, 351, 504, 555, 776, 810
BspCNI CTCAG 2 cut(s) 279, 508
BspFNI CGCG 3 cut(s) 617, 635, 659
BspLI GGNNCC 8 cut(s) 18, 86, 145, 180, 382, 816, 865, 916
BspPI GGATC 1 cut(s) 863
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 3 cut(s) 380, 863, 914
BsrFI RCCGGY 6 cut(s) 6, 13, 181, 308, 347, 806
BsrI ACTGG 3 cut(s) 439, 819, 1012
BssAI RCCGGY 6 cut(s) 6, 13, 181, 308, 347, 806
BssECI CCNNGG 8 cut(s) 80, 118, 376, 409, 646, 647, 648, 689
BssMI GATC 3 cut(s) 249, 834, 855
BssNI GRCGYC 5 cut(s) 381, 521, 531, 723, 915
BssSI CACGAG 1 cut(s) 758
Bst2BI CACGAG 1 cut(s) 758
Bst2UI CCWGG 4 cut(s) 82, 542, 557, 812
Bst4CI ACNGT 5 cut(s) 205, 325, 370, 538, 989
BstACI GRCGYC 5 cut(s) 381, 521, 531, 723, 915
BstBAI YACGTR 2 cut(s) 228, 921
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 4 cut(s) 310, 774, 778, 808
BstDEI CTNAG 2 cut(s) 266, 495
BstDSI CCRYGG 1 cut(s) 409
BstEII GGTNACC 1 cut(s) 9
BstENI CCTNNNNNAGG 1 cut(s) 848
BstF5I GGATG 2 cut(s) 435, 744
BstFNI CGCG 3 cut(s) 617, 635, 659
BstH2I RGCGCY 3 cut(s) 238, 384, 918
BstHHI GCGC 6 cut(s) 6, 237, 383, 659, 917, 945
BstKTI GATC 3 cut(s) 252, 837, 858
BstMAI GTCTC 2 cut(s) 364, 714
BstMBI GATC 3 cut(s) 249, 834, 855
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 6 cut(s) 82, 464, 561, 726, 773, 803
BstNI CCWGG 4 cut(s) 82, 542, 557, 812
BstNSI RCATGY 1 cut(s) 688
BstPI GGTNACC 1 cut(s) 9
BstSCI CCNGG 7 cut(s) 80, 540, 555, 646, 647, 688, 810
BstUI CGCG 3 cut(s) 617, 635, 659
BstV1I GCAGC 2 cut(s) 244, 904
BstV2I GAAGAC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 855
BstYI RGATCY 1 cut(s) 855
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 9 cut(s) 79, 85, 98, 181, 351, 504, 555, 776, 810
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 2 cut(s) 435, 744
BtsI GCAGTG 2 cut(s) 189, 965
BtsIMutI CAGTG 3 cut(s) 105, 189, 965
Cac8I GCNNGC 4 cut(s) 310, 774, 778, 808
CfoI GCGC 6 cut(s) 6, 237, 383, 659, 917, 945
Cfr10I RCCGGY 6 cut(s) 6, 13, 181, 308, 347, 806
Cfr13I GGNCC 6 cut(s) 78, 84, 179, 184, 814, 995
Cfr9I CCCGGG 1 cut(s) 647
CviAII CATG 4 cut(s) 72, 175, 685, 928
DdeI CTNAG 2 cut(s) 266, 495
DinI GGCGCC 2 cut(s) 382, 916
DpnI GATC 3 cut(s) 251, 836, 857
DpnII GATC 3 cut(s) 249, 834, 855
DrdI GACNNNNNNGTC 2 cut(s) 203, 536
DseDI GACNNNNNNGTC 2 cut(s) 203, 536
EaeI YGGCCR 4 cut(s) 349, 553, 774, 808
EciI GGCGGA 3 cut(s) 52, 268, 445
Eco47I GGWCC 3 cut(s) 184, 814, 995
Eco57I CTGAAG 1 cut(s) 716
Eco72I CACGTG 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 647
Eco91I GGTNACC 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 848
EcoO109I RGGNCCY 1 cut(s) 814
EcoO65I GGTNACC 1 cut(s) 9
EcoRII CCWGG 4 cut(s) 80, 540, 555, 810
EgeI GGCGCC 2 cut(s) 382, 916
EheI GGCGCC 2 cut(s) 382, 916
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 4 cut(s) 75, 178, 688, 931
FaiI YATR 6 cut(s) 73, 176, 200, 686, 752, 929
FatI CATG 4 cut(s) 71, 174, 684, 927
FauI CCCGC 3 cut(s) 371, 434, 482
Fnu4HI GCNGC 9 cut(s) 66, 77, 233, 238, 282, 502, 553, 565, 893
FokI GGATG 2 cut(s) 422, 751
Fsp4HI GCNGC 9 cut(s) 66, 77, 233, 238, 282, 502, 553, 565, 893
FspBI CTAG 1 cut(s) 788
GlaI GCGC 6 cut(s) 5, 236, 382, 658, 916, 944
GluI GCNGC 9 cut(s) 66, 77, 233, 238, 282, 502, 553, 565, 893
HaeII RGCGCY 3 cut(s) 238, 384, 918
HaeIII GGCC 9 cut(s) 79, 85, 98, 181, 351, 504, 555, 776, 810
HhaI GCGC 6 cut(s) 6, 237, 383, 659, 917, 945
Hin1I GRCGYC 5 cut(s) 381, 521, 531, 723, 915
Hin1II CATG 4 cut(s) 75, 178, 688, 931
Hin6I GCGC 6 cut(s) 4, 235, 381, 657, 915, 943
HinP1I GCGC 6 cut(s) 4, 235, 381, 657, 915, 943
HinfI GANTC 3 cut(s) 287, 936, 970
HphI GGTGA 5 cut(s) 3, 31, 415, 454, 526
Hpy166II GTNNAC 5 cut(s) 160, 208, 373, 793, 885
Hpy188I TCNGA 3 cut(s) 151, 526, 714
Hpy188III TCNNGA 3 cut(s) 257, 625, 758
Hpy8I GTNNAC 5 cut(s) 160, 208, 373, 793, 885
Hpy99I CGWCG 6 cut(s) 308, 533, 599, 725, 728, 914
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 5 cut(s) 205, 325, 370, 538, 989
HpyCH4IV ACGT 8 cut(s) 227, 357, 521, 531, 581, 723, 920, 975
HpyCH4V TGCA 2 cut(s) 958, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 464, 561, 726, 773, 803
HpyF3I CTNAG 2 cut(s) 266, 495
HpySE526I ACGT 8 cut(s) 227, 357, 521, 531, 581, 723, 920, 975
Hsp92I GRCGYC 5 cut(s) 381, 521, 531, 723, 915
Hsp92II CATG 4 cut(s) 75, 178, 688, 931
HspAI GCGC 6 cut(s) 4, 235, 381, 657, 915, 943
KasI GGCGCC 2 cut(s) 380, 914
KroI GCCGGC 2 cut(s) 308, 806
KroNI GCCGGC 2 cut(s) 310, 808
Kzo9I GATC 3 cut(s) 249, 834, 855
LmnI GCTCC 4 cut(s) 22, 30, 149, 275
Lsp1109I GCAGC 2 cut(s) 244, 904
MaeI CTAG 1 cut(s) 788
MaeII ACGT 8 cut(s) 227, 357, 521, 531, 581, 723, 920, 975
MaeIII GTNAC 5 cut(s) 9, 460, 532, 971, 983
MalI GATC 3 cut(s) 251, 836, 857
MboI GATC 3 cut(s) 249, 834, 855
MboII GAAGA 3 cut(s) 256, 259, 331
MflI RGATCY 1 cut(s) 855
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 1 cut(s) 134
MluI ACGCGT 1 cut(s) 615
MluNI TGGCCA 1 cut(s) 776
Mly113I GGCGCC 2 cut(s) 381, 915
MlyI GAGTC 2 cut(s) 281, 979
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 776
MroNI GCCGGC 2 cut(s) 308, 806
MroXI GAANNNNTTC 1 cut(s) 701
MscI TGGCCA 1 cut(s) 776
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 895
MspR9I CCNGG 7 cut(s) 82, 542, 557, 648, 649, 690, 812
MvaI CCWGG 4 cut(s) 82, 542, 557, 812
MvnI CGCG 3 cut(s) 617, 635, 659
MwoI GCNNNNNNNGC 6 cut(s) 82, 464, 561, 726, 773, 803
NaeI GCCGGC 2 cut(s) 310, 808
NarI GGCGCC 2 cut(s) 381, 915
NciI CCSGG 3 cut(s) 648, 649, 690
NdeII GATC 3 cut(s) 249, 834, 855
NgoMIV GCCGGC 2 cut(s) 308, 806
NlaIII CATG 4 cut(s) 75, 178, 688, 931
NlaIV GGNNCC 8 cut(s) 18, 86, 145, 180, 382, 816, 865, 916
NmeAIII GCCGAG 4 cut(s) 99, 357, 409, 793
NmuCI GTSAC 4 cut(s) 9, 460, 532, 971
NspI RCATGY 1 cut(s) 688
NspV TTCGAA 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 534, 765
PdiI GCCGGC 2 cut(s) 310, 808
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 936
Pfl23II CGTACG 2 cut(s) 612, 666
PflFI GACNNNGTC 2 cut(s) 155, 530
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 9 cut(s) 67, 78, 234, 239, 283, 503, 554, 566, 894
PleI GAGTC 2 cut(s) 281, 978
PluTI GGCGCC 2 cut(s) 384, 918
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
PpsI GAGTC 2 cut(s) 281, 978
Ppu21I YACGTR 2 cut(s) 228, 921
PpuMI RGGWCCY 1 cut(s) 814
Psp5II RGGWCCY 1 cut(s) 814
Psp6I CCWGG 4 cut(s) 80, 540, 555, 810
PspCI CACGTG 1 cut(s) 228
PspEI GGTNACC 1 cut(s) 9
PspGI CCWGG 4 cut(s) 80, 540, 555, 810
PspLI CGTACG 2 cut(s) 612, 666
PspN4I GGNNCC 8 cut(s) 18, 86, 145, 180, 382, 816, 865, 916
PspPI GGNCC 6 cut(s) 78, 84, 179, 184, 814, 995
PspPPI RGGWCCY 1 cut(s) 814
PsrI GAACNNNNNNTAC 2 cut(s) 785, 817
PsuI RGATCY 1 cut(s) 855
PsyI GACNNNGTC 2 cut(s) 155, 530
PvuII CAGCTG 1 cut(s) 895
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 9 cut(s) 66, 77, 233, 238, 282, 502, 553, 565, 893
Sau3AI GATC 3 cut(s) 249, 834, 855
Sau96I GGNCC 6 cut(s) 78, 84, 179, 184, 814, 995
SchI GAGTC 2 cut(s) 281, 979
ScrFI CCNGG 7 cut(s) 82, 542, 557, 648, 649, 690, 812
SfoI GGCGCC 2 cut(s) 382, 916
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 3 cut(s) 184, 814, 995
SmaI CCCGGG 1 cut(s) 649
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 134
SspDI GGCGCC 2 cut(s) 380, 914
SspMI CTAG 1 cut(s) 788
StyD4I CCNGG 7 cut(s) 80, 540, 555, 646, 647, 688, 810
TaaI ACNGT 5 cut(s) 205, 325, 370, 538, 989
TaiI ACGT 8 cut(s) 230, 360, 524, 534, 584, 726, 923, 978
TaqI TCGA 2 cut(s) 138, 1008
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 681
TauI GCSGC 7 cut(s) 68, 79, 240, 284, 504, 555, 567
TfiI GAWTC 1 cut(s) 936
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 3 cut(s) 112, 196, 965
TseFI GTSAC 4 cut(s) 9, 460, 532, 971
TseI GCWGC 2 cut(s) 232, 892
Tsp45I GTSAC 4 cut(s) 9, 460, 532, 971
TspDTI ATGAA 2 cut(s) 60, 944
TspGWI ACGGA 4 cut(s) 9, 292, 433, 948
TspMI CCCGGG 1 cut(s) 647
TspRI CASTG 3 cut(s) 112, 196, 965
Tth111I GACNNNGTC 2 cut(s) 155, 530
VpaK11BI GGWCC 3 cut(s) 184, 814, 995
XagI CCTNNNNNAGG 1 cut(s) 848
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 826
XmaI CCCGGG 1 cut(s) 647
XmnI GAANNNNTTC 1 cut(s) 701
XspI CTAG 1 cut(s) 788
ZraI GACGTC 3 cut(s) 522, 532, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.