pycom07g26580

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000119
Physical Location & Seq
Reverse (-)
26567797 .. 26568189
393 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26580.1

Sequence Viewer

Length: 393 bp
ATGCTTAAAGACAAGGATGAAAAAGTGTTGAAGATGATGTGCGACTATCTAAAGCCAGCGACGTACGTTGAGAACAGCTTCGTTTTTCGAACGGGAGATCCACTCGATTGCATGCTGTTCATTATCGAAGGGACAATGTGGACCTACACGTCGAGTGATAGTCATGCTGGGCAAGTAATCTCATCAATGGCCATCGAGCCCCTCAGGAAAGGTGACTTTTACGGTAAAGAGCTTCTCGATTGCGCATCAGACTTCACCCAAGTTCCAGTCTCCAGCAAACATGTCAAAAGTCATACAAAAGTAGAAGCATTTGTGCTCATGGCCGAGGACTTAGTCTCCATACTCAGACAACATGGGGACTTGCTTAATCGTAACAATCCTGAAAAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

5.5

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
Acc16I TGCGCA 1 cut(s) 244
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 2 cut(s) 189, 321
AfaI GTAC 1 cut(s) 65
AflIII ACRYGT 2 cut(s) 147, 280
AgsI TTSAA 1 cut(s) 31
AjiI CACGTC 1 cut(s) 150
AloI GAACNNNNNNTCC 2 cut(s) 82, 114
AluBI AGCT 2 cut(s) 78, 232
AluI AGCT 2 cut(s) 78, 232
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 2 cut(s) 274, 340
AlwI GGATC 1 cut(s) 92
AoxI GGCC 2 cut(s) 189, 321
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 224, 247
AsuII TTCGAA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 203
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 318
BccI CCATC 1 cut(s) 200
BcoDI GTCTC 2 cut(s) 274, 340
Bme18I GGWCC 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 254
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 1 cut(s) 256
Bpu14I TTCGAA 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse1I ACTGG 1 cut(s) 266
Bse21I CCTNAGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 22
BseMII CTCAG 2 cut(s) 217, 358
BseNI ACTGG 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 167
BshFI GGCC 2 cut(s) 191, 323
BsiHKAI GWGCWC 1 cut(s) 318
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 2 cut(s) 145, 371
BsmAI GTCTC 2 cut(s) 274, 340
BsmFI GGGAC 2 cut(s) 145, 371
BsnI GGCC 2 cut(s) 191, 323
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 201, 318
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 2 cut(s) 191, 323
BspCNI CTCAG 2 cut(s) 216, 357
BspPI GGATC 1 cut(s) 92
BspT104I TTCGAA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 57, 113
BstDEI CTNAG 3 cut(s) 203, 331, 344
BstF5I GGATG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 274, 340
BstMBI GATC 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 115, 284
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 2 cut(s) 191, 323
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 57, 113
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 64
CviAII CATG 5 cut(s) 112, 164, 281, 319, 353
CviJI RGCY 6 cut(s) 55, 78, 191, 199, 232, 323
CviKI_1 RGCY 6 cut(s) 55, 78, 191, 199, 232, 323
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 203, 331, 344
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 2 cut(s) 189, 321
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 5 cut(s) 115, 167, 284, 322, 356
FaiI YATR 7 cut(s) 113, 165, 282, 294, 320, 341, 354
FaqI GGGAC 2 cut(s) 145, 371
FatI CATG 5 cut(s) 111, 163, 280, 318, 352
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 201
FspI TGCGCA 1 cut(s) 244
GlaI GCGC 1 cut(s) 244
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 2 cut(s) 191, 323
HhaI GCGC 1 cut(s) 245
Hin1II CATG 5 cut(s) 115, 167, 284, 322, 356
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HphI GGTGA 2 cut(s) 224, 247
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 250, 347
Hpy188III TCNNGA 3 cut(s) 205, 236, 380
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 2 cut(s) 64, 154
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 3 cut(s) 62, 66, 149
HpyCH4V TGCA 1 cut(s) 111
HpyF3I CTNAG 3 cut(s) 203, 331, 344
HpySE526I ACGT 3 cut(s) 62, 66, 149
Hsp92II CATG 5 cut(s) 115, 167, 284, 322, 356
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 69, 153, 190, 279, 286
LweI GCATC 1 cut(s) 254
MaeII ACGT 3 cut(s) 62, 66, 149
MaeIII GTNAC 2 cut(s) 212, 371
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 43
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 2 cut(s) 201, 318
MlsI TGGCCA 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 191
MnlI CCTC 2 cut(s) 212, 319
Mox20I TGGCCA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 77
MscI TGGCCA 1 cut(s) 191
MseI TTAA 2 cut(s) 6, 366
Msp20I TGGCCA 1 cut(s) 191
NdeII GATC 1 cut(s) 97
NlaIII CATG 5 cut(s) 115, 167, 284, 322, 356
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 212
NsbI TGCGCA 1 cut(s) 244
NspI RCATGY 2 cut(s) 115, 284
NspV TTCGAA 1 cut(s) 88
PaeI GCATGC 1 cut(s) 115
PciI ACATGT 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 77
Pfl23II CGTACG 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 332
PscI ACATGT 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 167
PspLI CGTACG 1 cut(s) 63
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 97
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 6, 366
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 141
SduI GDGCHC 2 cut(s) 201, 318
SetI ASST 7 cut(s) 65, 69, 80, 146, 152, 214, 234
SfaNI GCATC 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 1 cut(s) 141
SphI GCATGC 1 cut(s) 115
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 3 cut(s) 65, 69, 152
TaqI TCGA 6 cut(s) 88, 105, 126, 152, 195, 237
Tru1I TTAA 2 cut(s) 6, 366
Tru9I TTAA 2 cut(s) 6, 366
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 33, 109
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 141
XceI RCATGY 2 cut(s) 115, 284
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.