Rroxscaffold_4G00278790

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000119
Physical Location & Seq
Forward (+)
1682406 .. 1685928
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278790.1

Sequence Viewer

Length: 1875 bp
ATGTCTAATCGTCAGGTACCCTGCTACGATGACAGCATCATCGAAATGAGCGCTACAAAAGGAATAGGTTATGATTTCAACTGTCCTGAGGCTCTATTGCAACGTCCAGTACCGCGGACAGGTGAAGTTGGAGAAGCTCAAGCAAGCAACAAAGGGAAAATGCCAACAGTTGCGGAAATTCTTTCAGTTTTGAACCCATGGTGGAATACGATACTATTAACTTCATGTGTGATTGCAGTTATATTTGATCCTTTGTTCGTTTACATTCCATACATCAGTGAGGAACAAAAGTGCATGGGAATCGATAAACAAGTGCTGATTGCGGCTCTGGTTTTCCGATCAGTCACGGACATCACTTTCCTAGTGCATATCATATACCAACTTCATGAAGCTATCAAATTTGCAGCCTCAAAGGTTCCAAGGGATACAAATGCGGATTGGGAACGGGTATCCCGAGTTCGGATGATTCAGTTTGCAAGGGAATTTTCTCGCAAATTGTCATGGCGCTCTTTCCTAACTGACGTTTTCGCTATTTTCCCCATGCCACAACTAATAGTGGGGTTGTTTTTCAAAATGGGAGGCAGTAACTATTTGGAGAGAAGAAGGATTCTGAGCGGTTTTCTTCTAGTCCAATATGTGCCAAGAATTTATCGAATTTATCTATCGTATACCGCGGTTACACATTCTGCATTATGGGTTAAAGGTGCATTCAATCTTTTCCTCTACATCCTTGCCAGTCATGTACTGGGAGCCTTTTGGTACTTCTTTTCTATTCAGCGAGAGACATCATGTTGGTACCGAACTTGCATTGATACAAAACTACCAGAATCAGATTGTATTTTTTACTGTCATGACAATACACATATATCTGAAGAATTCAATAAAACTCTAGGAGAACGTTGCATTGTGAAAGTTCCATATAATGTGACTGATCCACCGTTTGATTTTGGAATATTTTTTGATGCCCTCAAAAATGATATCCAAGGGCCAATAAATTTTCCACAAAAGATTGGTTATTGTTTTTGGTGGGGCTTGCGAAATTTGAGTAATTTTGGCACTAGTTTGGAAACAAGTACCTATCTGTGGGAAAACACCTTTGCAATTCTTATTTCTATCATCGGCTTGCTATTGTTTTTATATCTCATTGGAAATGTGCAGTTATATATGGCGAAGGCAACTACAAGAGCGGAGGAGGTAAGAGAGAAGATTCAGACCAAAAAGAACGATATAGAAAAGTGGATGGAAAAAAATGGTCTTCAAGATGACATGAAGGAAGAGATCATGAAAAACATCAAGCAAAAATTGGAAGAGGACATAAATGCAGATCTGGAGGATCTATTCTCTATTCTTCCGTGGTATACCAAGAAAGCTCTAAAGCGCGTTCTCTGCATGAGTGCGCTAAGAAAAGTACCAATGCTCAGCAAGATGGATGAAAAAGTTTTGAAACTGATGTGCGACTATCTGAAGCCGGTGAATTACCCAGAAAATACCCTGGTTTTTCAGATGGGAGAACCACTTGATCGAATGGTCTTCATTACAGAAGGATTTATGTGGACGTACACGACTGCTACTGACAGTAGTCATTATCGAAAAGCAACAGAACCGGCTACTTCTCCATCCATGGATACCAACTTCCTCAAGAAGGGTGATTCATATGGACACGCGCTTCTGCAGTTTGCATCATCATCTCTTGCGGCACTTCCTACCTCGGACGCAAATGTCCGGTGTCACACAAAGGTAGAGGCGTTTGTTCTCATGGCCAAGGACTTGAAAAACATAGTAGCTAAATGCGAAAATTTGTGGCCTTTCGACTACAATGCTTCTAAAGATGAGGCGGCGGATCAGGTGGCACCACTGAGGCAGTTTCAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

624

Amino Acids

71.93

Weight (kDa)

7.07

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 65 - 396 1e-08 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1718
Acc65I GGTACC 2 cut(s) 16, 795
AccB1I GGYRCC 3 cut(s) 16, 795, 1849
AccBSI CCGCTC 2 cut(s) 615, 1187
AccI GTMKAC 2 cut(s) 668, 1358
AccII CGCG 4 cut(s) 115, 674, 1380, 1664
AclI AACGTT 1 cut(s) 898
AclWI GGATC 4 cut(s) 242, 926, 1341, 1848
AcoI YGGCCR 1 cut(s) 1758
AcsI RAATTY 9 cut(s) 177, 398, 482, 645, 654, 875, 994, 1039, 1795
AcuI CTGAAG 2 cut(s) 891, 1484
AfaI GTAC 8 cut(s) 18, 111, 744, 761, 797, 1075, 1410, 1559
AfeI AGCGCT 1 cut(s) 52
AfiI CCNNNNNNNGG 4 cut(s) 119, 459, 1083, 1642
AgsI TTSAA 8 cut(s) 79, 193, 571, 712, 880, 1259, 1444, 1771
AhlI ACTAGT 1 cut(s) 1058
AjnI CCWGG 1 cut(s) 1491
AluBI AGCT 4 cut(s) 137, 392, 1370, 1784
AluI AGCT 4 cut(s) 137, 392, 1370, 1784
Alw26I GTCTC 1 cut(s) 776
AlwI GGATC 4 cut(s) 242, 926, 1341, 1848
Ama87I CYCGRG 1 cut(s) 453
Aor51HI AGCGCT 1 cut(s) 52
AoxI GGCC 3 cut(s) 986, 1758, 1802
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 9 cut(s) 177, 398, 482, 645, 654, 875, 994, 1039, 1795
Asp718I GGTACC 2 cut(s) 16, 795
AspLEI GCGC 5 cut(s) 53, 507, 1380, 1399, 1666
AspS9I GGNCC 1 cut(s) 986
AsuHPI GGTGA 3 cut(s) 134, 1483, 1658
AvaI CYCGRG 1 cut(s) 453
AxyI CCTNAGG 1 cut(s) 87
BalI TGGCCA 1 cut(s) 1760
BanI GGYRCC 3 cut(s) 16, 795, 1849
BbsI GAAGAC 2 cut(s) 1247, 1522
BbvI GCAGC 1 cut(s) 416
BccI CCATC 4 cut(s) 1234, 1420, 1498, 1624
BcgI CGANNNNNNTGC 4 cut(s) 283, 317, 1799, 1833
BciT130I CCWGG 1 cut(s) 1493
BciVI GTATCC 3 cut(s) 418, 460, 1618
BcoDI GTCTC 1 cut(s) 776
BcuI ACTAGT 1 cut(s) 1058
BfaI CTAG 4 cut(s) 362, 626, 890, 1059
BfmI CTRYAG 1 cut(s) 1670
BfoI RGCGCY 2 cut(s) 54, 508
BfuI GTATCC 3 cut(s) 418, 460, 1618
BglII AGATCT 1 cut(s) 1324
BisI GCNGC 4 cut(s) 324, 405, 1695, 1836
BlpI GCTNAGC 1 cut(s) 1418
BlsI GCNGC 4 cut(s) 325, 406, 1696, 1837
Bme1390I CCNGG 1 cut(s) 1493
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 986
BmiI GGNNCC 5 cut(s) 18, 417, 751, 797, 1851
BmrFI CCNGG 1 cut(s) 1493
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 3 cut(s) 45, 952, 1688
BmuI ACTGGG 1 cut(s) 755
BoxI GACNNNNGTC 1 cut(s) 1578
BpiI GAAGAC 2 cut(s) 1247, 1522
BpmI CTGGAG 1 cut(s) 1349
Bpu1102I GCTNAGC 1 cut(s) 1418
BpuEI CTTGAG 2 cut(s) 123, 1622
Bsa29I ATCGAT 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 1722
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 459, 1083, 1642
Bse118I RCCGGY 2 cut(s) 1468, 1603
Bse1I ACTGG 3 cut(s) 107, 735, 750
Bse21I CCTNAGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 1493
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 5 cut(s) 468, 726, 1245, 1435, 1616
BseLI CCNNNNNNNGG 4 cut(s) 119, 459, 1083, 1642
BseMII CTCAG 4 cut(s) 78, 602, 1432, 1847
BseNI ACTGG 3 cut(s) 107, 735, 750
BseRI GAGGAG 1 cut(s) 1205
BseXI GCAGC 1 cut(s) 416
BsgI GTGCAG 1 cut(s) 1175
Bsh1236I CGCG 4 cut(s) 115, 674, 1380, 1664
BshFI GGCC 3 cut(s) 988, 1760, 1804
BshNI GGYRCC 3 cut(s) 16, 795, 1849
BshVI ATCGAT 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 3 cut(s) 1469, 1604, 1723
BslI CCNNNNNNNGG 4 cut(s) 119, 459, 1083, 1642
BsmAI GTCTC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 3 cut(s) 988, 1760, 1804
BsoBI CYCGRG 1 cut(s) 453
Bsp143I GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
Bsp1720I GCTNAGC 1 cut(s) 1418
Bsp19I CCATGG 2 cut(s) 197, 1620
BspANI GGCC 3 cut(s) 988, 1760, 1804
BspCNI CTCAG 4 cut(s) 79, 603, 1431, 1848
BspDI ATCGAT 1 cut(s) 303
BspFNI CGCG 4 cut(s) 115, 674, 1380, 1664
BspHI TCATGA 3 cut(s) 385, 850, 1281
BspLI GGNNCC 5 cut(s) 18, 417, 751, 797, 1851
BspMAI CTGCAG 1 cut(s) 1674
BspPI GGATC 4 cut(s) 242, 926, 1341, 1848
BspT107I GGYRCC 3 cut(s) 16, 795, 1849
BsrBI CCGCTC 2 cut(s) 615, 1187
BsrFI RCCGGY 2 cut(s) 1468, 1603
BsrI ACTGG 3 cut(s) 107, 735, 750
BssAI RCCGGY 2 cut(s) 1468, 1603
BssMI GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
BssNAI GTATAC 2 cut(s) 669, 1359
BssT1I CCWWGG 5 cut(s) 197, 419, 982, 1620, 1761
Bst1107I GTATAC 2 cut(s) 669, 1359
Bst2UI CCWGG 1 cut(s) 1493
Bst4CI ACNGT 5 cut(s) 83, 169, 848, 939, 1577
Bst6I CTCTTC 2 cut(s) 1269, 1302
BstC8I GCNNGC 3 cut(s) 145, 1034, 1124
BstDEI CTNAG 5 cut(s) 87, 611, 1400, 1418, 1856
BstDSI CCRYGG 5 cut(s) 113, 197, 672, 1352, 1620
BstENI CCTNNNNNAGG 1 cut(s) 1640
BstF5I GGATG 5 cut(s) 468, 726, 1245, 1435, 1616
BstFNI CGCG 4 cut(s) 115, 674, 1380, 1664
BstH2I RGCGCY 2 cut(s) 54, 508
BstHHI GCGC 5 cut(s) 53, 507, 1380, 1399, 1666
BstKTI GATC 8 cut(s) 250, 341, 934, 1281, 1327, 1336, 1522, 1843
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
BstMWI GCNNNNNNNGC 2 cut(s) 1386, 1867
BstNI CCWGG 1 cut(s) 1493
BstPAI GACNNNNGTC 1 cut(s) 1578
BstSCI CCNGG 1 cut(s) 1491
BstSFI CTRYAG 1 cut(s) 1670
BstUI CGCG 4 cut(s) 115, 674, 1380, 1664
BstV1I GCAGC 1 cut(s) 416
BstV2I GAAGAC 2 cut(s) 1247, 1522
BstX2I RGATCY 2 cut(s) 1324, 1333
BstYI RGATCY 2 cut(s) 1324, 1333
BstZ17I GTATAC 2 cut(s) 669, 1359
Bsu15I ATCGAT 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 87
BsuI GTATCC 3 cut(s) 418, 460, 1618
BsuRI GGCC 3 cut(s) 988, 1760, 1804
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 5 cut(s) 113, 197, 672, 1352, 1620
BtsCI GGATG 5 cut(s) 468, 726, 1245, 1435, 1616
BtsIMutI CAGTG 2 cut(s) 283, 1853
Cac8I GCNNGC 3 cut(s) 145, 1034, 1124
CciI TCATGA 3 cut(s) 385, 850, 1281
CfoI GCGC 5 cut(s) 53, 507, 1380, 1399, 1666
Cfr10I RCCGGY 2 cut(s) 1468, 1603
Cfr13I GGNCC 1 cut(s) 986
Cfr42I CCGCGG 2 cut(s) 116, 675
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 1721
Csp6I GTAC 8 cut(s) 17, 110, 743, 760, 796, 1074, 1409, 1558
CviQI GTAC 8 cut(s) 17, 110, 743, 760, 796, 1074, 1409, 1558
DdeI CTNAG 5 cut(s) 87, 611, 1400, 1418, 1856
DpnI GATC 8 cut(s) 249, 340, 933, 1280, 1326, 1335, 1521, 1842
DpnII GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
DrdI GACNNNNNNGTC 1 cut(s) 1718
DseDI GACNNNNNNGTC 1 cut(s) 1718
EaeI YGGCCR 1 cut(s) 1758
Eam1104I CTCTTC 2 cut(s) 1269, 1302
EarI CTCTTC 2 cut(s) 1269, 1302
EciI GGCGGA 1 cut(s) 1853
Eco130I CCWWGG 5 cut(s) 197, 419, 982, 1620, 1761
Eco32I GATATC 1 cut(s) 979
Eco47III AGCGCT 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 891, 1484
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 453
EcoNI CCTNNNNNAGG 1 cut(s) 1640
EcoRI GAATTC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 1491
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 5 cut(s) 197, 419, 982, 1620, 1761
ErhI CCWWGG 5 cut(s) 197, 419, 982, 1620, 1761
FauNDI CATATG 1 cut(s) 1654
FblI GTMKAC 2 cut(s) 668, 1358
Fnu4HI GCNGC 4 cut(s) 324, 405, 1695, 1836
FokI GGATG 5 cut(s) 475, 713, 1252, 1442, 1603
Fsp4HI GCNGC 4 cut(s) 324, 405, 1695, 1836
FspBI CTAG 4 cut(s) 362, 626, 890, 1059
GlaI GCGC 5 cut(s) 52, 506, 1379, 1398, 1665
GluI GCNGC 4 cut(s) 324, 405, 1695, 1836
GsuI CTGGAG 1 cut(s) 1349
HaeII RGCGCY 2 cut(s) 54, 508
HaeIII GGCC 3 cut(s) 988, 1760, 1804
HapII CCGG 3 cut(s) 1469, 1604, 1723
HgaI GACGC 1 cut(s) 1721
HhaI GCGC 5 cut(s) 53, 507, 1380, 1399, 1666
Hin6I GCGC 5 cut(s) 51, 505, 1378, 1397, 1664
HinP1I GCGC 5 cut(s) 51, 505, 1378, 1397, 1664
HinfI GANTC 6 cut(s) 300, 466, 607, 827, 1207, 1649
HpaII CCGG 3 cut(s) 1469, 1604, 1723
HphI GGTGA 3 cut(s) 134, 1483, 1658
Hpy166II GTNNAC 5 cut(s) 262, 669, 1359, 1554, 1560
Hpy188I TCNGA 9 cut(s) 338, 462, 612, 832, 871, 1212, 1464, 1503, 1711
Hpy188III TCNNGA 8 cut(s) 86, 386, 453, 851, 1259, 1282, 1328, 1639
Hpy8I GTNNAC 5 cut(s) 262, 669, 1359, 1554, 1560
HpyAV CCTTC 5 cut(s) 597, 1165, 1264, 1535, 1636
HpyCH4III ACNGT 5 cut(s) 83, 169, 848, 939, 1577
HpyCH4IV ACGT 4 cut(s) 103, 522, 898, 1556
HpyF10VI GCNNNNNNNGC 2 cut(s) 1386, 1867
HpyF3I CTNAG 5 cut(s) 87, 611, 1400, 1418, 1856
HpySE526I ACGT 4 cut(s) 103, 522, 898, 1556
HspAI GCGC 5 cut(s) 51, 505, 1378, 1397, 1664
KpnI GGTACC 2 cut(s) 20, 799
KspI CCGCGG 2 cut(s) 116, 675
Kzo9I GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
LmnI GCTCC 1 cut(s) 749
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 3 cut(s) 45, 952, 1688
MaeI CTAG 4 cut(s) 362, 626, 890, 1059
MaeII ACGT 4 cut(s) 103, 522, 898, 1556
MaeIII GTNAC 5 cut(s) 343, 584, 676, 925, 1727
MalI GATC 8 cut(s) 249, 340, 933, 1280, 1326, 1335, 1521, 1842
MbiI CCGCTC 2 cut(s) 615, 1187
MboI GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
MboII GAAGA 9 cut(s) 612, 614, 884, 1216, 1247, 1286, 1319, 1340, 1522
MflI RGATCY 2 cut(s) 1324, 1333
MlsI TGGCCA 1 cut(s) 1760
MluNI TGGCCA 1 cut(s) 1760
MmeI TCCRAC 1 cut(s) 109
Mox20I TGGCCA 1 cut(s) 1760
MscI TGGCCA 1 cut(s) 1760
MseI TTAA 2 cut(s) 218, 699
MslI CAYNNNNRTG 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 1760
MspA1I CMGCKG 2 cut(s) 115, 674
MspI CCGG 3 cut(s) 1469, 1604, 1723
MspR9I CCNGG 1 cut(s) 1493
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 1 cut(s) 1493
MvnI CGCG 4 cut(s) 115, 674, 1380, 1664
MwoI GCNNNNNNNGC 2 cut(s) 1386, 1867
NcoI CCATGG 2 cut(s) 197, 1620
NdeI CATATG 1 cut(s) 1654
NdeII GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
NlaIV GGNNCC 5 cut(s) 18, 417, 751, 797, 1851
NmuCI GTSAC 3 cut(s) 343, 925, 1727
PagI TCATGA 3 cut(s) 385, 850, 1281
PcsI WCGNNNNNNNCGW 1 cut(s) 451
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 6 cut(s) 300, 466, 607, 827, 1207, 1649
PkrI GCNGC 4 cut(s) 325, 406, 1696, 1837
PshAI GACNNNNGTC 1 cut(s) 1578
Psp1406I AACGTT 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 1491
PspGI CCWGG 1 cut(s) 1491
PspN4I GGNNCC 5 cut(s) 18, 417, 751, 797, 1851
PspPI GGNCC 1 cut(s) 986
PsrI GAACNNNNNNTAC 2 cut(s) 441, 473
PstI CTGCAG 1 cut(s) 1674
PsuI RGATCY 2 cut(s) 1324, 1333
RsaI GTAC 8 cut(s) 18, 111, 744, 761, 797, 1075, 1410, 1559
RsaNI GTAC 8 cut(s) 17, 110, 743, 760, 796, 1074, 1409, 1558
RseI CAYNNNNRTG 1 cut(s) 44
SacII CCGCGG 2 cut(s) 116, 675
SaqAI TTAA 2 cut(s) 218, 699
SatI GCNGC 4 cut(s) 324, 405, 1695, 1836
Sau3AI GATC 8 cut(s) 247, 338, 931, 1278, 1324, 1333, 1519, 1840
Sau96I GGNCC 1 cut(s) 986
ScrFI CCNGG 1 cut(s) 1493
SfaNI GCATC 3 cut(s) 45, 952, 1688
SfcI CTRYAG 1 cut(s) 1670
Sfr303I CCGCGG 2 cut(s) 116, 675
SgrBI CCGCGG 2 cut(s) 116, 675
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 138, 1637
SmoI CTYRAG 2 cut(s) 138, 1637
SpeI ACTAGT 1 cut(s) 1058
SspI AATATT 1 cut(s) 954
SspMI CTAG 4 cut(s) 362, 626, 890, 1059
StyD4I CCNGG 1 cut(s) 1491
StyI CCWWGG 5 cut(s) 197, 419, 982, 1620, 1761
TaaI ACNGT 5 cut(s) 83, 169, 848, 939, 1577
TaiI ACGT 4 cut(s) 106, 525, 901, 1559
TaqI TCGA 6 cut(s) 42, 303, 652, 1522, 1588, 1809
TatI WGTACW 1 cut(s) 742
TauI GCSGC 3 cut(s) 326, 1697, 1838
TfiI GAWTC 6 cut(s) 300, 466, 607, 827, 1207, 1649
Tru1I TTAA 2 cut(s) 218, 699
Tru9I TTAA 2 cut(s) 218, 699
TscAI CASTG 2 cut(s) 283, 1860
TseFI GTSAC 3 cut(s) 343, 925, 1727
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 3 cut(s) 343, 925, 1727
TspDTI ATGAA 8 cut(s) 213, 374, 402, 1283, 1298, 1446, 1522, 1641
TspGWI ACGGA 2 cut(s) 362, 1341
TspRI CASTG 2 cut(s) 283, 1860
XagI CCTNNNNNAGG 1 cut(s) 1640
XapI RAATTY 9 cut(s) 177, 398, 482, 645, 654, 875, 994, 1039, 1795
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XmiI GTMKAC 2 cut(s) 668, 1358
XspI CTAG 4 cut(s) 362, 626, 890, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.