MD07G1292800.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000119
Physical Location & Seq
Reverse (-)
35429937 .. 35442566
12630 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1292800.v1.1.491

Sequence Viewer

Length: 1920 bp
ATGGCTAACAGAGATGTGGAGAACCAGGCAGCGGGATCTGTTTCAGGACCTTGGAAAGTATTGCTTACACTGGTATTATATGCTGTAAGAACGCAAAAACATGAACCGAGGAAATTCCTTCACATATGGAGTAAGATATTTGTTATGTCCTGTGTATTTGCCGTCTCACTAGATCCTCTGTTCTTGTACACTTTAATCATTGATCAAGATAACAAGTGTCTTCAAATGGACAAAAAGCTCAGCACTACTGTTCTTGTGTTGCGATCATTCACGGATATCATTTTTGTTGTGCCTTTTCTATATAAAGTTCACAAAAGCGTTAAATTTCAAATGCACAAAAATTTGGGGGCTAATGTGGCTGCAAATACCACGAGAACTGTGGCCTCAAGTACCAAGCAAATTGAAGGAAATTTATACAGGAAATCAAAAGGAAGAGCGTTGACTAAAGTTGGCAAGAAAATAGCCCAGAAGATGTCGTGGTTTTCTTTCTCCATCATAAATGATTTTCTCTCTCTTCTTCCTGTCCCACAACTACTAATAATAGTTACATTTTACAATATGAGAGGCGCTGAATATGTAGAACATAGAAAGGTTCTGAATGTCTTTATTCTGGGTCAATATCTACCAAGGGTATATCGAGTTCACCAATCGTCCAAGAAACTTCAAGAGACTGCTGGAATTTGGATTAAAGGCCTATTCAATTTTTTTCTCTACATGCTTGCCAGTCATATACTTGGAGGTTTTTGGTATTTCTTTTCTATTCAACAAGAGACATTATGCTGGTATAATGCTTGTGCAAAACATAGTCCAGATCCTATCGGATGTATGAATACTTTTTACTGTGGGCGTCAAACTACTACTTCGAGAAATATAACACTTCTAAACGAGCATTGCCCGTTAGATACTCCAGATGGTGTCTTACCACCATTTAATTTTGGAATATTTCTTGATTCTCTTAAGAATCGTAACTTAGACCATATAAAGTTCGAAAAGAAGTTCTTTTACTCCTTCTGGTGGGGCTTGCGAAATCTAAGTAATTTTGGGACAAATCTGATAACAAGTACGTACGTGTGGGAAAACTTGTTTGCGATTCTCATTTCTGTTGTTGGCTTGCTGCTGTTTTTATATCTCATTGGAAACGTGCAGATGGAAGCTACAAAAACAGAGGAGAGGAGACAAAAAGCAGAGGAAGACGAGGAGACGAAACAGAAGATTTCGATGAAGATGCTAGATGTACGCAGGTGGATATCTGAAAATAAATTCCCTGATGATGTCAAGGAAGAGATCATGGATAGCATGGCGAAAATATTGAAACAAGACAAAGATGCTGATGTGCACAAGCCATTCCTTATTCTTCCCTGGCAAACCAAAAGATCTGTTAAACGCCATCTTTTCATGGGTACACTTAAAAAAGTAAACAGGCTTAAAGGCATGAATGAAAAAGTGTTGACGTTGATGTGCGACTGTCTGAAGCCAGTGACGTACGGTGAGACCAGCTTCGTTTTTCGAATGGGAGATCCACTCGATTGCATGATGTTCATTATCCAAGGAACAGTGTGGACCTACGGGTCGAGTGATAATCAAGTTGGGCAAGGAGTCTCATCAATGGCCATCAAGCGCGTCGGGAAAGGTTACATTTATGGGGAGGAGCTTCTCGACTGGGCATCAGACTGTTTCAACGAACTTCCAGTCTCCAGCAAACATGTCAAAAGTCAGACAAAAGTGGAAGCATTTGTGCTCCTGGCCAAGGACTTGGAAACCGTAGTCTCCAGATGCAAAACATATTGGGACTTGCACAATTGTAACAATCCCGAAGAGGTGGCAGTCTCTACCGTTCGTCGTTTCTTTAGAAGGCCGCAACGACGTCCGCCCCTGTCCTCGGCTGAAATATGGAATGACATTAATCGTAGAACGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

640

Amino Acids

73.95

Weight (kDa)

9.44

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 80 - 392 9.8e-09 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1230
AasI GACNNNNNNGTC 1 cut(s) 1567
AatII GACGTC 1 cut(s) 1867
Acc36I ACCTGC 1 cut(s) 1230
AccII CGCG 1 cut(s) 1620
AciI CCGC 3 cut(s) 32, 1856, 1868
AclWI GGATC 4 cut(s) 43, 167, 806, 1511
AcoI YGGCCR 2 cut(s) 1608, 1743
AcsI RAATTY 6 cut(s) 113, 323, 340, 409, 678, 1259
AcuI CTGAAG 1 cut(s) 1490
AcyI GRCGYC 2 cut(s) 847, 1864
AfaI GTAC 7 cut(s) 188, 391, 1063, 1067, 1236, 1402, 1484
AfiI CCNNNNNNNGG 4 cut(s) 31, 1014, 1747, 1879
AflII CTTAAG 1 cut(s) 956
AflIII ACRYGT 2 cut(s) 1068, 1702
AgsI TTSAA 8 cut(s) 224, 329, 404, 665, 700, 764, 1312, 1678
AjnI CCWGG 3 cut(s) 24, 1358, 1740
AluBI AGCT 4 cut(s) 238, 1154, 1497, 1651
AluI AGCT 4 cut(s) 238, 1154, 1497, 1651
Alw21I GWGCWC 2 cut(s) 1338, 1740
Alw44I GTGCAC 1 cut(s) 1334
AlwI GGATC 4 cut(s) 43, 167, 806, 1511
AoxI GGCC 5 cut(s) 381, 691, 1608, 1743, 1853
ApaLI GTGCAC 1 cut(s) 1334
ApeKI GCWGC 3 cut(s) 29, 359, 1114
ApoI RAATTY 6 cut(s) 113, 323, 340, 409, 678, 1259
ArsI GACNNNNNNTTYG 2 cut(s) 1674, 1706
AseI ATTAAT 1 cut(s) 1902
AspLEI GCGC 2 cut(s) 569, 1620
AspS9I GGNCC 2 cut(s) 47, 1560
AsuHPI GGTGA 2 cut(s) 635, 1499
AsuII TTCGAA 2 cut(s) 987, 1507
AvaII GGWCC 2 cut(s) 47, 1560
BaeGI GKGCMC 1 cut(s) 1338
BalI TGGCCA 2 cut(s) 1610, 1745
BarI GAAGNNNNNNTAC 2 cut(s) 986, 1018
BauI CACGAG 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 212, 1197
Bbv12I GWGCWC 2 cut(s) 1338, 1740
BbvI GCAGC 3 cut(s) 41, 346, 1101
BccI CCATC 5 cut(s) 500, 905, 1141, 1395, 1619
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 1207, 1241
BciT130I CCWGG 3 cut(s) 26, 1360, 1742
BclI TGATCA 1 cut(s) 202
BfaI CTAG 2 cut(s) 170, 1229
BfoI RGCGCY 1 cut(s) 570
BfrI CTTAAG 1 cut(s) 956
BfuAI ACCTGC 1 cut(s) 1230
BglII AGATCT 1 cut(s) 1373
BisI GCNGC 4 cut(s) 30, 360, 1115, 1856
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 4 cut(s) 31, 361, 1116, 1857
Bme1390I CCNGG 3 cut(s) 26, 1360, 1742
Bme18I GGWCC 2 cut(s) 47, 1560
BmgT120I GGNCC 2 cut(s) 47, 1560
BmrFI CCNGG 3 cut(s) 26, 1360, 1742
BmrI ACTGGG 1 cut(s) 1669
BmsI GCATC 4 cut(s) 1215, 1315, 1673, 1763
BmuI ACTGGG 1 cut(s) 1669
BpiI GAAGAC 2 cut(s) 212, 1197
BplI GAGNNNNNCTC 2 cut(s) 1506, 1538
BpmI CTGGAG 3 cut(s) 891, 1678, 1753
Bpu1102I GCTNAGC 1 cut(s) 239
Bpu14I TTCGAA 2 cut(s) 987, 1507
BpuEI CTTGAG 1 cut(s) 370
BsaAI YACGTR 2 cut(s) 1065, 1069
BsaHI GRCGYC 2 cut(s) 847, 1864
BsaI GGTCTC 1 cut(s) 1484
BsaJI CCNNGG 7 cut(s) 50, 107, 626, 1358, 1546, 1746, 1878
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 1014, 1747, 1879
Bse1I ACTGG 5 cut(s) 75, 723, 1475, 1664, 1688
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 3 cut(s) 26, 1360, 1742
BseDI CCNNGG 7 cut(s) 50, 107, 626, 1358, 1546, 1746, 1878
BseGI GGATG 1 cut(s) 827
BseLI CCNNNNNNNGG 4 cut(s) 31, 1014, 1747, 1879
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 5 cut(s) 75, 723, 1475, 1664, 1688
BseRI GAGGAG 4 cut(s) 1181, 1186, 1211, 1661
BseSI GKGCMC 1 cut(s) 1338
BseXI GCAGC 3 cut(s) 41, 346, 1101
BsgI GTGCAG 1 cut(s) 1163
Bsh1236I CGCG 1 cut(s) 1620
BshFI GGCC 5 cut(s) 383, 693, 1610, 1745, 1855
BsiHKAI GWGCWC 2 cut(s) 1338, 1740
BsiWI CGTACG 2 cut(s) 1065, 1482
BslFI GGGAC 3 cut(s) 509, 1057, 1802
BslI CCNNNNNNNGG 4 cut(s) 31, 1014, 1747, 1879
BsmBI CGTCTC 2 cut(s) 169, 1193
BsmFI GGGAC 3 cut(s) 509, 1057, 1802
BsnI GGCC 5 cut(s) 383, 693, 1610, 1745, 1855
Bso31I GGTCTC 1 cut(s) 1484
Bsp119I TTCGAA 2 cut(s) 987, 1507
Bsp1286I GDGCHC 2 cut(s) 1338, 1740
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 3 cut(s) 32, 1856, 1868
BspANI GGCC 5 cut(s) 383, 693, 1610, 1745, 1855
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 1620
BspMI ACCTGC 1 cut(s) 1230
BspPI GGATC 4 cut(s) 43, 167, 806, 1511
BspQI GCTCTTC 1 cut(s) 427
BspT104I TTCGAA 2 cut(s) 987, 1507
BspTI CTTAAG 1 cut(s) 956
BspTNI GGTCTC 1 cut(s) 1484
BsrDI GCAATG 1 cut(s) 889
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 5 cut(s) 75, 723, 1475, 1664, 1688
BssECI CCNNGG 7 cut(s) 50, 107, 626, 1358, 1546, 1746, 1878
BssMI GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
BssNI GRCGYC 2 cut(s) 847, 1864
BssSI CACGAG 1 cut(s) 370
BssT1I CCWWGG 4 cut(s) 50, 626, 1546, 1746
Bst2BI CACGAG 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 26, 1360, 1742
Bst4CI ACNGT 9 cut(s) 250, 379, 842, 1466, 1487, 1555, 1673, 1762, 1834
Bst6I CTCTTC 4 cut(s) 427, 519, 1275, 1809
BstACI GRCGYC 2 cut(s) 847, 1864
BstAFI CTTAAG 1 cut(s) 956
BstAUI TGTACA 1 cut(s) 186
BstBAI YACGTR 2 cut(s) 1065, 1069
BstBI TTCGAA 2 cut(s) 987, 1507
BstC8I GCNNGC 3 cut(s) 720, 1022, 1112
BstDEI CTNAG 3 cut(s) 239, 970, 1031
BstENI CCTNNNNNAGG 1 cut(s) 1745
BstF5I GGATG 1 cut(s) 827
BstFNI CGCG 1 cut(s) 1620
BstH2I RGCGCY 1 cut(s) 570
BstHHI GCGC 2 cut(s) 569, 1620
BstKTI GATC 8 cut(s) 38, 175, 205, 266, 814, 1287, 1376, 1519
BstMBI GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 3 cut(s) 26, 1360, 1742
BstNSI RCATGY 2 cut(s) 718, 1706
BstSCI CCNGG 3 cut(s) 24, 1358, 1740
BstSLI GKGCMC 1 cut(s) 1338
BstSNI TACGTA 1 cut(s) 1065
BstUI CGCG 1 cut(s) 1620
BstV1I GCAGC 3 cut(s) 41, 346, 1101
BstV2I GAAGAC 2 cut(s) 212, 1197
BstX2I RGATCY 5 cut(s) 35, 172, 811, 1373, 1516
BstXI CCANNNNNNTGG 1 cut(s) 1753
BstYI RGATCY 5 cut(s) 35, 172, 811, 1373, 1516
BsuRI GGCC 5 cut(s) 383, 693, 1610, 1745, 1855
BtsCI GGATG 1 cut(s) 827
BtsIMutI CAGTG 3 cut(s) 68, 1482, 1560
BveI ACCTGC 1 cut(s) 1230
Cac8I GCNNGC 3 cut(s) 720, 1022, 1112
CfoI GCGC 2 cut(s) 569, 1620
Cfr13I GGNCC 2 cut(s) 47, 1560
CseI GACGC 2 cut(s) 836, 1609
Csp6I GTAC 7 cut(s) 187, 390, 1062, 1066, 1235, 1401, 1483
CviAII CATG 8 cut(s) 101, 715, 1288, 1297, 1396, 1432, 1531, 1703
CviQI GTAC 7 cut(s) 187, 390, 1062, 1066, 1235, 1401, 1483
DdeI CTNAG 3 cut(s) 239, 970, 1031
DpnI GATC 8 cut(s) 37, 174, 204, 265, 813, 1286, 1375, 1518
DpnII GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
DrdI GACNNNNNNGTC 1 cut(s) 1567
DseDI GACNNNNNNGTC 1 cut(s) 1567
EaeI YGGCCR 2 cut(s) 1608, 1743
Eam1104I CTCTTC 4 cut(s) 427, 519, 1275, 1809
EarI CTCTTC 4 cut(s) 427, 519, 1275, 1809
EciI GGCGGA 1 cut(s) 1857
Eco105I TACGTA 1 cut(s) 1065
Eco130I CCWWGG 4 cut(s) 50, 626, 1546, 1746
Eco147I AGGCCT 1 cut(s) 693
Eco31I GGTCTC 1 cut(s) 1484
Eco32I GATATC 2 cut(s) 277, 1248
Eco47I GGWCC 2 cut(s) 47, 1560
Eco57I CTGAAG 1 cut(s) 1490
EcoNI CCTNNNNNAGG 1 cut(s) 1745
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 3 cut(s) 24, 1358, 1740
EcoRV GATATC 2 cut(s) 277, 1248
EcoT14I CCWWGG 4 cut(s) 50, 626, 1546, 1746
ErhI CCWWGG 4 cut(s) 50, 626, 1546, 1746
Esp3I CGTCTC 2 cut(s) 169, 1193
FaeI CATG 8 cut(s) 104, 718, 1291, 1300, 1399, 1435, 1534, 1706
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 983, 1015
FaqI GGGAC 3 cut(s) 509, 1057, 1802
FatI CATG 8 cut(s) 100, 714, 1287, 1296, 1395, 1431, 1530, 1702
FauI CCCGC 1 cut(s) 25
FauNDI CATATG 1 cut(s) 125
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 30, 360, 1115, 1856
FokI GGATG 1 cut(s) 834
Fsp4HI GCNGC 4 cut(s) 30, 360, 1115, 1856
FspBI CTAG 2 cut(s) 170, 1229
GlaI GCGC 2 cut(s) 568, 1619
GluI GCNGC 4 cut(s) 30, 360, 1115, 1856
GsuI CTGGAG 3 cut(s) 891, 1678, 1753
HaeII RGCGCY 1 cut(s) 570
HaeIII GGCC 5 cut(s) 383, 693, 1610, 1745, 1855
HgaI GACGC 2 cut(s) 836, 1609
HhaI GCGC 2 cut(s) 569, 1620
Hin1I GRCGYC 2 cut(s) 847, 1864
Hin1II CATG 8 cut(s) 104, 718, 1291, 1300, 1399, 1435, 1534, 1706
Hin6I GCGC 2 cut(s) 567, 1618
HinP1I GCGC 2 cut(s) 567, 1618
HincII GTYRAC 2 cut(s) 441, 1449
HindII GTYRAC 2 cut(s) 441, 1449
HinfI GANTC 4 cut(s) 950, 961, 1090, 1596
HphI GGTGA 2 cut(s) 635, 1499
Hpy166II GTNNAC 9 cut(s) 189, 310, 441, 643, 1336, 1403, 1417, 1449, 1560
Hpy188I TCNGA 7 cut(s) 597, 821, 1053, 1252, 1470, 1669, 1716
Hpy8I GTNNAC 9 cut(s) 189, 310, 441, 643, 1336, 1403, 1417, 1449, 1560
Hpy99I CGWCG 3 cut(s) 1625, 1842, 1866
HpyAV CCTTC 4 cut(s) 128, 398, 1018, 1845
HpyCH4III ACNGT 9 cut(s) 250, 379, 842, 1466, 1487, 1555, 1673, 1762, 1834
HpyCH4IV ACGT 6 cut(s) 1064, 1068, 1140, 1451, 1481, 1864
HpyCH4V TGCA 8 cut(s) 334, 362, 797, 1144, 1336, 1530, 1776, 1795
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 3 cut(s) 239, 970, 1031
HpySE526I ACGT 6 cut(s) 1064, 1068, 1140, 1451, 1481, 1864
Hsp92I GRCGYC 2 cut(s) 847, 1864
Hsp92II CATG 8 cut(s) 104, 718, 1291, 1300, 1399, 1435, 1534, 1706
HspAI GCGC 2 cut(s) 567, 1618
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
LguI GCTCTTC 1 cut(s) 427
LmnI GCTCC 2 cut(s) 1648, 1743
Lsp1109I GCAGC 3 cut(s) 41, 346, 1101
LweI GCATC 4 cut(s) 1215, 1315, 1673, 1763
MaeI CTAG 2 cut(s) 170, 1229
MaeII ACGT 6 cut(s) 1064, 1068, 1140, 1451, 1481, 1864
MaeIII GTNAC 5 cut(s) 544, 965, 1477, 1631, 1802
MalI GATC 8 cut(s) 37, 174, 204, 265, 813, 1286, 1375, 1518
MboI GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
MfeI CAATTG 1 cut(s) 1798
MflI RGATCY 5 cut(s) 35, 172, 811, 1373, 1516
MhlI GDGCHC 2 cut(s) 1338, 1740
MlsI TGGCCA 2 cut(s) 1610, 1745
MluNI TGGCCA 2 cut(s) 1610, 1745
MlyI GAGTC 1 cut(s) 1605
Mox20I TGGCCA 2 cut(s) 1610, 1745
MscI TGGCCA 2 cut(s) 1610, 1745
MseI TTAA 9 cut(s) 194, 321, 687, 930, 957, 1380, 1407, 1425, 1902
Msp20I TGGCCA 2 cut(s) 1610, 1745
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 956
MspR9I CCNGG 3 cut(s) 26, 1360, 1742
MunI CAATTG 1 cut(s) 1798
MvaI CCWGG 3 cut(s) 26, 1360, 1742
MvnI CGCG 1 cut(s) 1620
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeI CATATG 1 cut(s) 125
NdeII GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
NlaIII CATG 8 cut(s) 104, 718, 1291, 1300, 1399, 1435, 1534, 1706
NmeAIII GCCGAG 1 cut(s) 1859
NmuCI GTSAC 1 cut(s) 1477
NspI RCATGY 2 cut(s) 718, 1706
NspV TTCGAA 2 cut(s) 987, 1507
PaqCI CACCTGC 1 cut(s) 1230
PceI AGGCCT 1 cut(s) 693
PciI ACATGT 1 cut(s) 1702
PciSI GCTCTTC 1 cut(s) 427
PfeI GAWTC 3 cut(s) 950, 961, 1090
Pfl23II CGTACG 2 cut(s) 1065, 1482
PkrI GCNGC 4 cut(s) 31, 361, 1116, 1857
PleI GAGTC 1 cut(s) 1604
PpsI GAGTC 1 cut(s) 1604
Ppu21I YACGTR 2 cut(s) 1065, 1069
PpuMI RGGWCCY 1 cut(s) 47
PscI ACATGT 1 cut(s) 1702
PshBI ATTAAT 1 cut(s) 1902
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 3 cut(s) 24, 1358, 1740
PspGI CCWGG 3 cut(s) 24, 1358, 1740
PspLI CGTACG 2 cut(s) 1065, 1482
PspPI GGNCC 2 cut(s) 47, 1560
PspPPI RGGWCCY 1 cut(s) 47
PsrI GAACNNNNNNTAC 2 cut(s) 624, 656
PsuI RGATCY 5 cut(s) 35, 172, 811, 1373, 1516
RsaI GTAC 7 cut(s) 188, 391, 1063, 1067, 1236, 1402, 1484
RsaNI GTAC 7 cut(s) 187, 390, 1062, 1066, 1235, 1401, 1483
SapI GCTCTTC 1 cut(s) 427
SaqAI TTAA 9 cut(s) 194, 321, 687, 930, 957, 1380, 1407, 1425, 1902
SatI GCNGC 4 cut(s) 30, 360, 1115, 1856
Sau3AI GATC 8 cut(s) 35, 172, 202, 263, 811, 1284, 1373, 1516
Sau96I GGNCC 2 cut(s) 47, 1560
SchI GAGTC 1 cut(s) 1605
ScrFI CCNGG 3 cut(s) 26, 1360, 1742
SduI GDGCHC 2 cut(s) 1338, 1740
SfaNI GCATC 4 cut(s) 1215, 1315, 1673, 1763
SfuI TTCGAA 2 cut(s) 987, 1507
SinI GGWCC 2 cut(s) 47, 1560
SmlI CTYRAG 2 cut(s) 385, 956
SmoI CTYRAG 2 cut(s) 385, 956
SnaBI TACGTA 1 cut(s) 1065
SseBI AGGCCT 1 cut(s) 693
SsiI CCGC 3 cut(s) 32, 1856, 1868
SspI AATATT 2 cut(s) 942, 1308
SspMI CTAG 2 cut(s) 170, 1229
StuI AGGCCT 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 24, 1358, 1740
StyI CCWWGG 4 cut(s) 50, 626, 1546, 1746
TaaI ACNGT 9 cut(s) 250, 379, 842, 1466, 1487, 1555, 1673, 1762, 1834
TaiI ACGT 6 cut(s) 1067, 1071, 1143, 1454, 1484, 1867
TaqI TCGA 8 cut(s) 637, 863, 987, 1217, 1507, 1524, 1571, 1656
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 1858
TfiI GAWTC 3 cut(s) 950, 961, 1090
Tru1I TTAA 9 cut(s) 194, 321, 687, 930, 957, 1380, 1407, 1425, 1902
Tru9I TTAA 9 cut(s) 194, 321, 687, 930, 957, 1380, 1407, 1425, 1902
TscAI CASTG 3 cut(s) 75, 1482, 1560
TseFI GTSAC 1 cut(s) 1477
TseI GCWGC 3 cut(s) 29, 359, 1114
Tsp45I GTSAC 1 cut(s) 1477
TspDTI ATGAA 7 cut(s) 117, 842, 1235, 1384, 1448, 1452, 1528
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 3 cut(s) 75, 1482, 1560
Vha464I CTTAAG 1 cut(s) 956
VneI GTGCAC 1 cut(s) 1334
VpaK11BI GGWCC 2 cut(s) 47, 1560
VspI ATTAAT 1 cut(s) 1902
XagI CCTNNNNNAGG 1 cut(s) 1745
XapI RAATTY 6 cut(s) 113, 323, 340, 409, 678, 1259
XceI RCATGY 2 cut(s) 718, 1706
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XspI CTAG 2 cut(s) 170, 1229
ZraI GACGTC 1 cut(s) 1865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.