MD07G1140800.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000119
Physical Location & Seq
Reverse (-)
20398222 .. 20401371
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1140800.v1.1.491

Sequence Viewer

Length: 1638 bp
ATGAATAGGATATTTGTAGTTGCATGCATGGTTGCAATCTCAATAGATCCCTTGTTTTTGTACATTCCTATCATCGATGGCGAAAGTAAGTGCCTCGGAGTGGACAAGAAGTTGAGGATTGTAGCTCTTCTTTTCCGATCACTCATAGATATCACTTACATACTGCATATTACATTTCAAATTCGTCAAGCTATTAAATCAGCGTCACCAGACCACCAGTCTCATCTCAACGAACAAACAATTACTTGGAAGGCGAAGTGTTTCGATTTATTTGAAAGTCTTCATAAAATATTTGAGAAGTTGTCGTGGCCTTCCATCATAATTGACGTTCTCGCTGTTCTTCCAATCCCACAAGTGTTAATGGGAGCTGTTTATTTCAAAATGGGTGGCTCTAGATATTTGGATAAGATAAAGATTGTGAATGTCTTTCTTCTCGTCCAATATTTGCCAATGTTATATGGAATTTACCTGGTGGATAGGAAATTTAGGAAAAACACTTCGGTGTGGATTAAAGGTGCTTTCTATTTTTTTCTGTACATCCTTGCCAGTCATATGCTTGGAGCATTTTGGTACCTTTTCTCCATTCAACGAGAAACAGATTGTTGGCACCAGGCATGCAGAAATACTGCAGGATGTAAACTAAGTTTCTATTGCGATGACAATGTTCCAACCAATGTCACAACATTGCTTACTGAATTCTGTCCCACAAGTCCCATAAATTCTACGGTATTTGATTTTGGAATGTTTTCCAACGGAATTGAGTCTGGTAACACCGGACCAATAAATTTTTTGACAAAGCTCTTTTACTCTTGGTGGTGGGGTCTCCTAAATCTAAGTAATTTTGGCACCAGTCTGCAAACAAGTTCGTACGTTTGGGAGAGCCTCTTTGCAATTCTGATTTCCACTATTGGGTTGCTACTAATTTCTTATCTTATTGGAAACGTACAGAATTGTCTACTGTGGGAGGAGGAAAAGAAAGTGCAAGAACCGAAGCTGAAGATCATAGAGGAAGGTCTAAGATTGTGGGCCTTCAAAAATAATCTCCCTCAACATTTGGAGAAAGAAGTCATAAAAAACATAAAACAAGCAATTGAACTAGACAAAGATGCAGACGTCGAGAATCTATTCTCTCTTCTTCCATGGCGTACCAGGCGAACTCTAAAGCGTTTTCTCTTCATGAACCGAATGATGGCAATACCAAGGCTTAAAAATATGGATGATAAAGTTCTGAAAATGATATGTGACTATCTCAAGCCAGTGGTCTACCCTCAGAATACAATCATCCGTCGGATGGGAGAACCATTTGATAGCATTCTCTTCGTTGCAGAAGGCACTGTGTGGGTTTACTCGACTACTGATAGAAGTCAGCAGATCGGAAAGATGAAGCAATTCCTTCAGAAAGGTGATATTTATGGAGCCGAAGAACTGCTGAGTTGGGCAACATCCCACAGTAGCAGCCTCTCCTTTGTCGACCTTCCTTTCTCGACGGAAAATGTGAAATGTCACACAAAGGTACAAGGTTTTGTTCTCAGCGCTATGGACTTGCAAGCTATAGTTTCCAACTGCGGACATTTGTGGAGCCCTAGTAATTCTGATGAGGCGGAGGTACCCCATACCACTACTTTAGTGATAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

546

Amino Acids

62.66

Weight (kDa)

8.31

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 420 - 481 6.5e-06 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1116
Acc65I GGTACC 2 cut(s) 570, 1606
AccB1I GGYRCC 4 cut(s) 570, 606, 845, 1606
AccI GTMKAC 3 cut(s) 955, 1263, 1470
AciI CCGC 2 cut(s) 1566, 1601
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 6 cut(s) 180, 462, 482, 695, 718, 784
AcuI CTGAAG 2 cut(s) 1016, 1379
AcyI GRCGYC 1 cut(s) 1113
AdeI CACNNNGTG 1 cut(s) 1338
AfaI GTAC 8 cut(s) 62, 536, 572, 869, 945, 1147, 1515, 1608
AfeI AGCGCT 1 cut(s) 1534
AfiI CCNNNNNNNGG 4 cut(s) 100, 909, 1189, 1291
AgsI TTSAA 6 cut(s) 179, 275, 379, 587, 1033, 1094
AhdI GACNNNNNGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 468, 609, 1148
AleI CACNNNNGTG 1 cut(s) 500
AluBI AGCT 6 cut(s) 125, 191, 368, 799, 994, 1550
AluI AGCT 6 cut(s) 125, 191, 368, 799, 994, 1550
Alw26I GTCTC 2 cut(s) 225, 827
AlwI GGATC 1 cut(s) 41
Aor51HI AGCGCT 1 cut(s) 1534
AoxI GGCC 2 cut(s) 308, 1026
ApeKI GCWGC 1 cut(s) 1455
ApoI RAATTY 6 cut(s) 180, 462, 482, 695, 718, 784
Asp700I GAANNNNTTC 5 cut(s) 260, 279, 745, 1124, 1388
Asp718I GGTACC 2 cut(s) 570, 1606
AspLEI GCGC 1 cut(s) 1535
AspS9I GGNCC 2 cut(s) 776, 1026
AsuHPI GGTGA 2 cut(s) 198, 1415
AvaII GGWCC 1 cut(s) 776
BanI GGYRCC 4 cut(s) 570, 606, 845, 1606
BanII GRGCYC 1 cut(s) 1583
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 1467
BccI CCATC 4 cut(s) 71, 323, 1183, 1285
BcgI CGANNNNNNTGC 2 cut(s) 1300, 1334
BciT130I CCWGG 3 cut(s) 470, 611, 1150
BcoDI GTCTC 2 cut(s) 225, 827
BfaI CTAG 3 cut(s) 393, 1097, 1584
BfmI CTRYAG 2 cut(s) 627, 1551
BfoI RGCGCY 1 cut(s) 1536
BisI GCNGC 1 cut(s) 1456
BlsI GCNGC 1 cut(s) 1457
Bme1390I CCNGG 3 cut(s) 470, 611, 1150
Bme18I GGWCC 1 cut(s) 776
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 776, 1026
BmiI GGNNCC 6 cut(s) 572, 608, 847, 1417, 1580, 1608
BmrFI CCNGG 3 cut(s) 470, 611, 1150
BmsI GCATC 1 cut(s) 1096
BpiI GAAGAC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 1235
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 1113
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 3 cut(s) 94, 1139, 1199
BsaWI WCCGGW 1 cut(s) 773
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 1570, 1600
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 909, 1189, 1291
Bse1I ACTGG 4 cut(s) 217, 546, 849, 1256
Bse3DI GCAATG 1 cut(s) 683
BseBI CCWGG 3 cut(s) 470, 611, 1150
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 94, 1139, 1199
BseGI GGATG 6 cut(s) 537, 638, 1222, 1281, 1296, 1442
BseLI CCNNNNNNNGG 4 cut(s) 100, 909, 1189, 1291
BseMI GCAATG 1 cut(s) 683
BseMII CTCAG 3 cut(s) 1283, 1421, 1543
BseNI ACTGG 4 cut(s) 217, 546, 849, 1256
BseRI GAGGAG 1 cut(s) 980
BseXI GCAGC 1 cut(s) 1467
BshFI GGCC 2 cut(s) 310, 1028
BshNI GGYRCC 4 cut(s) 570, 606, 845, 1606
BshVI ATCGAT 1 cut(s) 75
BsiSI CCGG 1 cut(s) 774
BsiWI CGTACG 1 cut(s) 867
BslFI GGGAC 2 cut(s) 687, 696
BslI CCNNNNNNNGG 4 cut(s) 100, 909, 1189, 1291
BsmAI GTCTC 2 cut(s) 225, 827
BsmFI GGGAC 2 cut(s) 687, 696
BsmI GAATGC 1 cut(s) 1311
BsnI GGCC 2 cut(s) 310, 1028
Bso31I GGTCTC 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 1583
Bsp1407I TGTACA 2 cut(s) 60, 534
Bsp143I GATC 4 cut(s) 46, 137, 999, 1371
Bsp19I CCATGG 1 cut(s) 1139
BspACI CCGC 2 cut(s) 1566, 1601
BspANI GGCC 2 cut(s) 310, 1028
BspCNI CTCAG 3 cut(s) 1282, 1422, 1542
BspDI ATCGAT 1 cut(s) 75
BspHI TCATGA 1 cut(s) 1176
BspLI GGNNCC 6 cut(s) 572, 608, 847, 1417, 1580, 1608
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 132
BspT107I GGYRCC 4 cut(s) 570, 606, 845, 1606
BspTNI GGTCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 683
BsrGI TGTACA 2 cut(s) 60, 534
BsrI ACTGG 4 cut(s) 217, 546, 849, 1256
BssECI CCNNGG 3 cut(s) 94, 1139, 1199
BssMI GATC 4 cut(s) 46, 137, 999, 1371
BssNI GRCGYC 1 cut(s) 1113
BssT1I CCWWGG 2 cut(s) 1139, 1199
Bst2UI CCWGG 3 cut(s) 470, 611, 1150
Bst4CI ACNGT 4 cut(s) 727, 960, 1336, 1451
Bst6I CTCTTC 4 cut(s) 132, 1137, 1178, 1322
BstACI GRCGYC 1 cut(s) 1113
BstAUI TGTACA 2 cut(s) 60, 534
BstC8I GCNNGC 3 cut(s) 25, 616, 1548
BstDEI CTNAG 6 cut(s) 641, 833, 1016, 1269, 1430, 1529
BstDSI CCRYGG 1 cut(s) 1139
BstF5I GGATG 6 cut(s) 537, 638, 1222, 1281, 1296, 1442
BstH2I RGCGCY 1 cut(s) 1536
BstHHI GCGC 1 cut(s) 1535
BstKTI GATC 4 cut(s) 49, 140, 1002, 1374
BstMAI GTCTC 2 cut(s) 225, 827
BstMBI GATC 4 cut(s) 46, 137, 999, 1371
BstMWI GCNNNNNNNGC 1 cut(s) 1150
BstNI CCWGG 3 cut(s) 470, 611, 1150
BstNSI RCATGY 2 cut(s) 27, 618
BstSCI CCNGG 3 cut(s) 468, 609, 1148
BstSFI CTRYAG 2 cut(s) 627, 1551
BstV1I GCAGC 1 cut(s) 1467
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 2 cut(s) 310, 1028
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 1139
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 6 cut(s) 537, 638, 1222, 1281, 1296, 1442
BtsIMutI CAGTG 2 cut(s) 1263, 1332
Cac8I GCNNGC 3 cut(s) 25, 616, 1548
CciI TCATGA 1 cut(s) 1176
CfoI GCGC 1 cut(s) 1535
Cfr13I GGNCC 2 cut(s) 776, 1026
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 1 cut(s) 192
CsiI ACCWGGT 1 cut(s) 468
Csp6I GTAC 8 cut(s) 61, 535, 571, 868, 944, 1146, 1514, 1607
CspCI CAANNNNNGTGG 2 cut(s) 367, 402
CviAII CATG 5 cut(s) 24, 28, 615, 1140, 1177
CviQI GTAC 8 cut(s) 61, 535, 571, 868, 944, 1146, 1514, 1607
DdeI CTNAG 6 cut(s) 641, 833, 1016, 1269, 1430, 1529
DpnI GATC 4 cut(s) 48, 139, 1001, 1373
DpnII GATC 4 cut(s) 46, 137, 999, 1371
DraIII CACNNNGTG 1 cut(s) 1338
DriI GACNNNNNGTC 1 cut(s) 217
Eam1104I CTCTTC 4 cut(s) 132, 1137, 1178, 1322
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 4 cut(s) 132, 1137, 1178, 1322
EciI GGCGGA 1 cut(s) 1616
Eco130I CCWWGG 2 cut(s) 1139, 1199
Eco24I GRGCYC 1 cut(s) 1583
Eco31I GGTCTC 1 cut(s) 827
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 776
Eco47III AGCGCT 1 cut(s) 1534
Eco57I CTGAAG 2 cut(s) 1016, 1379
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 3 cut(s) 468, 609, 1148
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 2 cut(s) 1139, 1199
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 1583
ErhI CCWWGG 2 cut(s) 1139, 1199
FaeI CATG 5 cut(s) 27, 31, 618, 1143, 1180
FaqI GGGAC 2 cut(s) 687, 696
FatI CATG 5 cut(s) 23, 27, 614, 1139, 1176
FauNDI CATATG 1 cut(s) 552
FblI GTMKAC 3 cut(s) 955, 1263, 1470
Fnu4HI GCNGC 1 cut(s) 1456
FokI GGATG 6 cut(s) 524, 645, 1229, 1268, 1303, 1429
FriOI GRGCYC 1 cut(s) 1583
Fsp4HI GCNGC 1 cut(s) 1456
FspBI CTAG 3 cut(s) 393, 1097, 1584
GlaI GCGC 1 cut(s) 1534
GluI GCNGC 1 cut(s) 1456
HaeII RGCGCY 1 cut(s) 1536
HaeIII GGCC 2 cut(s) 310, 1028
HapII CCGG 1 cut(s) 774
HgaI GACGC 1 cut(s) 192
HhaI GCGC 1 cut(s) 1535
Hin1I GRCGYC 1 cut(s) 1113
Hin1II CATG 5 cut(s) 27, 31, 618, 1143, 1180
Hin6I GCGC 1 cut(s) 1533
HinP1I GCGC 1 cut(s) 1533
HincII GTYRAC 1 cut(s) 1471
HindII GTYRAC 1 cut(s) 1471
HinfI GANTC 2 cut(s) 761, 1120
HpaII CCGG 1 cut(s) 774
HphI GGTGA 2 cut(s) 198, 1415
Hpy166II GTNNAC 6 cut(s) 103, 638, 956, 1264, 1345, 1471
Hpy188I TCNGA 9 cut(s) 98, 137, 897, 1230, 1272, 1290, 1376, 1398, 1594
Hpy188III TCNNGA 4 cut(s) 393, 1117, 1177, 1483
Hpy8I GTNNAC 6 cut(s) 103, 638, 956, 1264, 1345, 1471
Hpy99I CGWCG 3 cut(s) 1118, 1290, 1489
HpyAV CCTTC 7 cut(s) 244, 321, 1004, 1039, 1322, 1403, 1484
HpyCH4III ACNGT 4 cut(s) 727, 960, 1336, 1451
HpyCH4IV ACGT 4 cut(s) 327, 870, 942, 1113
HpyF10VI GCNNNNNNNGC 1 cut(s) 1150
HpyF3I CTNAG 6 cut(s) 641, 833, 1016, 1269, 1430, 1529
HpySE526I ACGT 4 cut(s) 327, 870, 942, 1113
Hsp92I GRCGYC 1 cut(s) 1113
Hsp92II CATG 5 cut(s) 27, 31, 618, 1143, 1180
HspAI GCGC 1 cut(s) 1533
KpnI GGTACC 2 cut(s) 574, 1610
Kzo9I GATC 4 cut(s) 46, 137, 999, 1371
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 4 cut(s) 365, 560, 1415, 1578
Lsp1109I GCAGC 1 cut(s) 1467
LweI GCATC 1 cut(s) 1096
MabI ACCWGGT 1 cut(s) 468
MaeI CTAG 3 cut(s) 393, 1097, 1584
MaeII ACGT 4 cut(s) 327, 870, 942, 1113
MaeIII GTNAC 5 cut(s) 204, 676, 767, 1241, 1502
MalI GATC 4 cut(s) 48, 139, 1001, 1373
MboI GATC 4 cut(s) 46, 137, 999, 1371
MfeI CAATTG 1 cut(s) 1089
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 1583
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 4 cut(s) 692, 774, 1268, 1584
Mph1103I ATGCAT 1 cut(s) 29
MroXI GAANNNNTTC 5 cut(s) 260, 279, 745, 1124, 1388
MseI TTAA 4 cut(s) 195, 359, 510, 1206
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 774
MspR9I CCNGG 3 cut(s) 470, 611, 1150
MunI CAATTG 1 cut(s) 1089
Mva1269I GAATGC 1 cut(s) 1311
MvaI CCWGG 3 cut(s) 470, 611, 1150
MwoI GCNNNNNNNGC 1 cut(s) 1150
NcoI CCATGG 1 cut(s) 1139
NdeI CATATG 1 cut(s) 552
NdeII GATC 4 cut(s) 46, 137, 999, 1371
NlaIII CATG 5 cut(s) 27, 31, 618, 1143, 1180
NlaIV GGNNCC 6 cut(s) 572, 608, 847, 1417, 1580, 1608
NmuCI GTSAC 4 cut(s) 204, 676, 1241, 1502
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 2 cut(s) 27, 618
OliI CACNNNNGTG 1 cut(s) 500
PaeI GCATGC 2 cut(s) 27, 618
PagI TCATGA 1 cut(s) 1176
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 1311
PdmI GAANNNNTTC 5 cut(s) 260, 279, 745, 1124, 1388
PfeI GAWTC 1 cut(s) 1120
Pfl23II CGTACG 1 cut(s) 867
PkrI GCNGC 1 cut(s) 1457
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp6I CCWGG 3 cut(s) 468, 609, 1148
PspGI CCWGG 3 cut(s) 468, 609, 1148
PspLI CGTACG 1 cut(s) 867
PspN4I GGNNCC 6 cut(s) 572, 608, 847, 1417, 1580, 1608
PspPI GGNCC 2 cut(s) 776, 1026
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 8 cut(s) 62, 536, 572, 869, 945, 1147, 1515, 1608
RsaNI GTAC 8 cut(s) 61, 535, 571, 868, 944, 1146, 1514, 1607
RseI CAYNNNNRTG 1 cut(s) 500
SalI GTCGAC 1 cut(s) 1469
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 4 cut(s) 195, 359, 510, 1206
SatI GCNGC 1 cut(s) 1456
Sau3AI GATC 4 cut(s) 46, 137, 999, 1371
Sau96I GGNCC 2 cut(s) 776, 1026
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 3 cut(s) 470, 611, 1150
SduI GDGCHC 1 cut(s) 1583
SexAI ACCWGGT 1 cut(s) 468
SfaNI GCATC 1 cut(s) 1096
SfcI CTRYAG 2 cut(s) 627, 1551
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 1250
SmoI CTYRAG 1 cut(s) 1250
SphI GCATGC 2 cut(s) 27, 618
SsiI CCGC 2 cut(s) 1566, 1601
SspI AATATT 2 cut(s) 291, 443
SspMI CTAG 3 cut(s) 393, 1097, 1584
StyD4I CCNGG 3 cut(s) 468, 609, 1148
StyI CCWWGG 2 cut(s) 1139, 1199
TaaI ACNGT 4 cut(s) 727, 960, 1336, 1451
TaiI ACGT 4 cut(s) 330, 873, 945, 1116
TaqI TCGA 6 cut(s) 75, 264, 1116, 1349, 1470, 1484
TatI WGTACW 2 cut(s) 60, 534
TfiI GAWTC 1 cut(s) 1120
Tru1I TTAA 4 cut(s) 195, 359, 510, 1206
Tru9I TTAA 4 cut(s) 195, 359, 510, 1206
TscAI CASTG 2 cut(s) 1263, 1339
TseFI GTSAC 4 cut(s) 204, 676, 1241, 1502
TseI GCWGC 1 cut(s) 1455
Tsp45I GTSAC 4 cut(s) 204, 676, 1241, 1502
TspDTI ATGAA 5 cut(s) 17, 272, 1165, 1193, 1397
TspGWI ACGGA 3 cut(s) 768, 1274, 1502
TspRI CASTG 2 cut(s) 1263, 1339
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 6 cut(s) 180, 462, 482, 695, 718, 784
XbaI TCTAGA 1 cut(s) 392
XceI RCATGY 2 cut(s) 27, 618
XmiI GTMKAC 3 cut(s) 955, 1263, 1470
XmnI GAANNNNTTC 5 cut(s) 260, 279, 745, 1124, 1388
XspI CTAG 3 cut(s) 393, 1097, 1584
ZraI GACGTC 1 cut(s) 1114
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.