MD07G1291500.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000119
Physical Location & Seq
Reverse (-)
35245361 .. 35245953
593 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1291500.v1.1.491

Sequence Viewer

Length: 489 bp
ATGTTTCACAACAAATTCCCTGATGATATCAAGAACGATATCAGGAATAGCATAGAGAAAGCATTGAAAAAATACCCAGATGCTGAAGTCCACAACCCATTACTTATCCTTTCTTGGCAAAGCAAAAGATCTATAAAACGCTTTCTTTTCATGGATACACTTAAAAAAGTAAATATGCTTAAGGACAGGGATGAAAAAGTGTTGACGTTGATATGCGACTATCTGAAGCCAGTGACGTGCAGTGAGAACACCTTCGTTTTTCGAATGGGAGATCCACTCGATTGCATGTTGTTCATTATCAAAGGAACAATGTGGGCCTACGCGTCATCGAGTGATGGTCATGCTGGGCAAGGAATCTCATCAATGTCCATCAAGCCCCTCGGGAAAGGTAACTTTTACGGGGAAGAACTTCTCGATTGGGCATCAAACTGTTTCACCAAAGTTCCAGTCTCCCGCAAACATGTTAAAACTGTTAAAGTCCCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

163

Amino Acids

18.59

Weight (kDa)

9.25

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 323
AciI CCGC 1 cut(s) 454
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 2 cut(s) 105, 245
AflII CTTAAG 1 cut(s) 179
AflIII ACRYGT 2 cut(s) 321, 460
AgsI TTSAA 1 cut(s) 67
AjiI CACGTC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 432, 464
Asp700I GAANNNNTTC 2 cut(s) 251, 408
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 427
AsuII TTCGAA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 380
BccI CCATC 2 cut(s) 329, 377
BciVI GTATCC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 454
BfrI CTTAAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 148
BglII AGATCT 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 380
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 315
BmsI GCATC 2 cut(s) 70, 431
BplI GAGNNNNNCTC 2 cut(s) 261, 293
Bpu14I TTCGAA 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 379
Bse1I ACTGG 2 cut(s) 230, 446
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 1 cut(s) 196
BseNI ACTGG 2 cut(s) 230, 446
BseYI CCCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 454
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 262
Bsp143I GATC 2 cut(s) 128, 271
BspACI CCGC 1 cut(s) 454
BspANI GGCC 1 cut(s) 317
BspFNI CGCG 1 cut(s) 323
BspPI GGATC 1 cut(s) 266
BspT104I TTCGAA 1 cut(s) 262
BspTI CTTAAG 1 cut(s) 179
BsrI ACTGG 2 cut(s) 230, 446
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 2 cut(s) 128, 271
Bst4CI ACNGT 2 cut(s) 431, 472
BstAFI CTTAAG 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 262
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 323
BstKTI GATC 2 cut(s) 131, 274
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 2 cut(s) 128, 271
BstNSI RCATGY 2 cut(s) 289, 464
BstUI CGCG 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 128, 271
BstYI RGATCY 2 cut(s) 128, 271
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 317
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 237, 247
CaiI CAGNNNCTG 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 312
CviAII CATG 4 cut(s) 151, 286, 341, 461
CviJI RGCY 3 cut(s) 229, 317, 376
CviKI_1 RGCY 3 cut(s) 229, 317, 376
DpnI GATC 2 cut(s) 130, 273
DpnII GATC 2 cut(s) 128, 271
Eco32I GATATC 2 cut(s) 28, 40
Eco57I CTGAAG 2 cut(s) 105, 245
Eco88I CYCGRG 1 cut(s) 380
EcoRV GATATC 2 cut(s) 28, 40
FaeI CATG 4 cut(s) 154, 289, 344, 464
FaiI YATR 8 cut(s) 53, 134, 152, 176, 214, 287, 342, 462
FaqI GGGAC 1 cut(s) 464
FatI CATG 4 cut(s) 150, 285, 340, 460
FauI CCCGC 1 cut(s) 461
FokI GGATG 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 348
HaeIII GGCC 1 cut(s) 317
HgaI GACGC 1 cut(s) 312
Hin1II CATG 4 cut(s) 154, 289, 344, 464
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 1 cut(s) 354
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 2 cut(s) 91, 204
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 4 cut(s) 31, 43, 382, 413
Hpy8I GTNNAC 2 cut(s) 91, 204
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 431, 472
HpyCH4IV ACGT 2 cut(s) 206, 236
HpyCH4V TGCA 2 cut(s) 240, 285
HpySE526I ACGT 2 cut(s) 206, 236
Hsp92II CATG 4 cut(s) 154, 289, 344, 464
Kzo9I GATC 2 cut(s) 128, 271
LpnPI CCDG 7 cut(s) 28, 33, 90, 172, 243, 330, 459
LweI GCATC 2 cut(s) 70, 431
MaeII ACGT 2 cut(s) 206, 236
MaeIII GTNAC 2 cut(s) 232, 389
MalI GATC 2 cut(s) 130, 273
MboI GATC 2 cut(s) 128, 271
MboII GAAGA 1 cut(s) 416
MflI RGATCY 2 cut(s) 128, 271
MluCI AATT 1 cut(s) 14
MluI ACGCGT 1 cut(s) 321
MnlI CCTC 1 cut(s) 389
MroXI GAANNNNTTC 2 cut(s) 251, 408
MseI TTAA 4 cut(s) 162, 180, 465, 474
MspCI CTTAAG 1 cut(s) 179
MvnI CGCG 1 cut(s) 323
NdeII GATC 2 cut(s) 128, 271
NlaIII CATG 4 cut(s) 154, 289, 344, 464
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 2 cut(s) 289, 464
NspV TTCGAA 1 cut(s) 262
PciI ACATGT 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 251, 408
PfeI GAWTC 1 cut(s) 354
PscI ACATGT 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 344
PspPI GGNCC 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 2 cut(s) 128, 271
SaqAI TTAA 4 cut(s) 162, 180, 465, 474
Sau3AI GATC 2 cut(s) 128, 271
Sau96I GGNCC 1 cut(s) 315
SetI ASST 4 cut(s) 209, 239, 254, 391
SfaNI GCATC 2 cut(s) 70, 431
SfuI TTCGAA 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 14
SsiI CCGC 1 cut(s) 454
TaaI ACNGT 2 cut(s) 431, 472
TaiI ACGT 2 cut(s) 209, 239
TaqI TCGA 4 cut(s) 262, 279, 329, 414
TasI AATT 1 cut(s) 14
TfiI GAWTC 1 cut(s) 354
Tru1I TTAA 4 cut(s) 162, 180, 465, 474
Tru9I TTAA 4 cut(s) 162, 180, 465, 474
TscAI CASTG 2 cut(s) 237, 247
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 139, 207, 283
TspRI CASTG 2 cut(s) 237, 247
Vha464I CTTAAG 1 cut(s) 179
XapI RAATTY 1 cut(s) 14
XceI RCATGY 2 cut(s) 289, 464
XmnI GAANNNNTTC 2 cut(s) 251, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.