Rorug01G0428700

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000119
Physical Location & Seq
Reverse (-)
52778308 .. 52784423
6116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0428700.1

Sequence Viewer

Length: 2394 bp
ATGGCCTCCACAAACTCAAACCCAAACCCATCGGACCCACCTCTCTCGCCGGACGACCTCGCCGCCCGAGCTCTGAACAAACGCTACGAGGGTCTGGTCACCGTTCGGACCAAGGCCATAAAGGGCAAAGGGGCTTGGTACTGGACTCATTTAGAGCCCGTCATGGTTCGCAACCCAAACACCAACGTCCCCAAAGCTGTCAAGCTCAAGTGTCTTCTCTGCGACGCCGTTTTCTCGGCCTCGAACCCCTCCCGAACCGCCTCCGAGCACCTCAAGCGCGGCACGTGTCCGAATTTCACCTCCGTGTTGAGACCCAACTCGTCGGCGTCGCTGTCGCCGCAGCCCATATCGTCTCTGCCGTCGCCGTCTTCCCACAATCACAGAAAACGAAGCTCGCAAATGGGTACTCCTCTCTCTCAAGCTCCTCCCACCTCTGCTTCCATTCAAGTACATTCTTTGGCTATGATTGAGTCGTCTCCCGGCTTTTGCGGCGGAGACCTTGGTTATCATTCGCAGGGTCCGAACCCGAACCCGAACCCGAATCCGAATCCTGTCGGGTTGAGCCACCACCAGCACCACCACCATTTGGTGTTGTCGGGTGGGAAAGACGATTTGGGTGCTTTGGCAATGTTGGAAAATAGTGTCAAAAAGCTTAAAAGCCCCAAGCCTTCTTCTGCTAATGTTTCACTTACTAAGGAGCAGGTTCATTCTGCACTTGACTTGTTGTCTGAGTGGTTCTATGAGTCTTGTGGGTCTGTCTCGTTTTCGAGCCTCGAGCACCCCAAGTTCAAGGCCTTTCTCGGCCAGGTGGGCTTGCCTGCTGTGTTGCAGCGTGAGCTTTCGGGTCCTCGGCTTGATGCTAAGTTTGCTGAGGCTAAAGCCGAGTCTGAGGCTAGGATAAGGGATGCAATGTTTTTTCAAGTGGCTTCAGATGGTTGGGAATGTAATAATTTTTGCGGTGGGGAGGAGAGTATGGTTAAGTTTATGGTTAATCTTCCCAATGGGAGCAGTGTTTTTCAGAAGGCTGTGTTTACTGGAGGGTCAGTTTCGTCGAAATATGCTGAGGAGCTAATGTGGGATGCGGTTACTGGGGTGTGTGGGAATGCTGTGCACCGTTGCGTGGGGATTGTTGCTGACAAGTATAAAGCCAAGGCATTGAGGAACTTGGAGAGTCAGAATCATTGGATGGTGAATGTTTCCTGTCAGCTACAGGGGTTTGTTTCTTTGATCAAGGATTTTAACAAAGAGCATAAGTTGTTTATGGTTGTTACTGATAATTGCGTGAAGGTTGCAAATTTTGTAAATACCACCACCGAGGTTAGGCGGATTTTTCAGAAGTACAAGATGCAGGAGCTTGGCTATGCTGGGCTGCTCCAAGTTTCTTCTTCCAAATGCGATAATTCTAAAAACTATGCGCCTGTTTATGCAATGCTGGAGGATATGTTGACCTGTTCCCGCATACTCCAAATGGTTGTCTTGGATGATTGCTATAAGGTGGCATGTGTGGAGGATCCAAGTGCTAGGGAAGTTGCAGCGATGATTCAAAGTGAAGGATTCTGGAATGAACTAGAGGCAGTTTATTCACTTATGAAGCTGATAAGAGGGATGGCTCAGGAGATTGAAGCTGAGAGGCCATTAATTGGGCAATGCCTGCCTCTTTGGGAAGAGTTGCGAACAAAAGTAAAGGATTGGTGTGCCAAGTTTAACATTGATGAAGGACCTGTTGAGAAAATAGTTGAAAAACGCTTCGCAAAGAATTACCACCCAGCATGGTCGGCTGCATTCATACTTGATCCACAATACCTGATGAAGGATGCTAGTGGAAAGTACCTTCCACCATTCAAGTGCTTGACGCACGAGCAGGAGAAGGATGTAGATAAGCTCATTACCAGACTGGTATCCAGGGAAGAAGCGCATGTTGCATTAATGGAGCTCATGAAATGGAGGACAGAAGGAATGGACCCACTTTATGCTCAGGCAGTTCAGGTTAAACAGCAAGATCCTGTTACTGGAAAAATGAAAATTGCAAACCCGCAGAGCAGTAGACTTGTGTGGGAAACTTGTCTAAGCAAGTTAAACATACTGGGGAAGGTTGCAGTGAGACTTATCTTCCTCCATGCAACCTCATTTGGATTCAAGTGTAATTGGTCTTTCATGAAATGGATTTGTGTACATAGGCACTCAAGGATAGGCCTGGAAAGGGCAGAGAAGATGATATTCATTGCAGCTCATGCAAAGCTTGAAAGAAGGGATCTCTCTAACGACGAAGAAAGGGAAGCAGAGCTGTTTGCGACTGCGAGTGTTGATGAGGACATGCTGAATGAGGTCCTTTCCGATGCACCCACAGTACTAGGGTTGCTTGAATCGGTTGGGTGGATGGCAAACCAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

797

Amino Acids

88.61

Weight (kDa)

8.1

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7963 PF25908 18 - 100 2.6e-45 Domain of unknown function (DUF7963)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 691
AccB7I CCANNNNNTGG 2 cut(s) 586, 1640
AccI GTMKAC 1 cut(s) 2044
AccII CGCG 1 cut(s) 279
AclWI GGATC 5 cut(s) 1505, 1518, 1787, 1994, 2259
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 2 cut(s) 292, 1294
AcuI CTGAAG 1 cut(s) 912
AcvI CACGTG 1 cut(s) 285
AcyI GRCGYC 2 cut(s) 225, 326
AfaI GTAC 7 cut(s) 140, 406, 450, 1340, 1829, 2172, 2349
AfiI CCNNNNNNNGG 7 cut(s) 586, 1120, 1320, 1640, 1810, 2009, 2200
AflIII ACRYGT 1 cut(s) 284
AhdI GACNNNNNGTC 1 cut(s) 724
AjnI CCWGG 4 cut(s) 804, 1901, 2193, 2385
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AleI CACNNNNGTG 1 cut(s) 302
Alw21I GWGCWC 5 cut(s) 73, 270, 780, 1113, 1935
Alw26I GTCTC 6 cut(s) 304, 357, 480, 489, 763, 2095
Alw44I GTGCAC 1 cut(s) 1109
AlwI GGATC 5 cut(s) 1505, 1518, 1787, 1994, 2259
Ama87I CYCGRG 2 cut(s) 66, 773
AoxI GGCC 7 cut(s) 3, 114, 237, 792, 802, 1631, 2191
ApaLI GTGCAC 1 cut(s) 1109
ApeKI GCWGC 6 cut(s) 340, 829, 1369, 1532, 1778, 2225
ApoI RAATTY 2 cut(s) 292, 1294
AseI ATTAAT 2 cut(s) 1637, 1925
AspLEI GCGC 3 cut(s) 279, 1417, 1915
AspS9I GGNCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 3 cut(s) 91, 289, 1201
AvaI CYCGRG 2 cut(s) 66, 773
AvaII GGWCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
BaeGI GKGCMC 1 cut(s) 1113
BamHI GGATCC 1 cut(s) 1510
BanII GRGCYC 3 cut(s) 73, 159, 1935
BauI CACGAG 1 cut(s) 1856
BbrPI CACGTG 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 206, 360
Bbv12I GWGCWC 5 cut(s) 73, 270, 780, 1113, 1935
BbvCI CCTCAGC 2 cut(s) 870, 1062
BbvI GCAGC 6 cut(s) 352, 841, 1356, 1544, 1765, 2237
BccI CCATC 5 cut(s) 37, 926, 1180, 1600, 2371
BceAI ACGGC 3 cut(s) 212, 343, 349
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 4 cut(s) 806, 1903, 2195, 2387
BciVI GTATCC 1 cut(s) 1909
BclI TGATCA 1 cut(s) 1227
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 6 cut(s) 304, 357, 480, 489, 763, 2095
BfaI CTAG 5 cut(s) 894, 1521, 1568, 1818, 2351
BfmI CTRYAG 1 cut(s) 1208
BfuAI ACCTGC 1 cut(s) 691
BfuI GTATCC 1 cut(s) 1909
BglI GCCNNNNNGGC 1 cut(s) 810
BmcAI AGTACT 1 cut(s) 2349
Bme1390I CCNGG 5 cut(s) 480, 806, 1903, 2195, 2387
Bme18I GGWCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
BmeRI GACNNNNNGTC 1 cut(s) 724
BmeT110I CYCGRG 2 cut(s) 66, 773
BmgT120I GGNCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
BmiI GGNNCC 5 cut(s) 36, 519, 846, 1512, 1962
BmrFI CCNGG 5 cut(s) 480, 806, 1903, 2195, 2387
BmrI ACTGGG 2 cut(s) 1098, 2093
BmsI GCATC 6 cut(s) 847, 895, 1069, 1335, 1804, 2326
BmuI ACTGGG 2 cut(s) 1098, 2093
BpiI GAAGAC 2 cut(s) 206, 360
BpmI CTGGAG 2 cut(s) 1056, 1454
Bpu10I CCTNAGC 4 cut(s) 870, 1062, 1611, 1974
BpuEI CTTGAG 4 cut(s) 191, 257, 402, 2167
BpuMI CCSGG 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 285
BsaHI GRCGYC 2 cut(s) 225, 326
BsaI GGTCTC 2 cut(s) 304, 489
BsaJI CCNNGG 6 cut(s) 111, 499, 848, 1149, 1314, 1902
BsaXI ACNNNNNCTCC 6 cut(s) 1029, 1058, 1059, 1088, 1427, 1457
Bsc4I CCNNNNNNNGG 7 cut(s) 586, 1120, 1320, 1640, 1810, 2009, 2200
Bse1I ACTGG 6 cut(s) 146, 1039, 1093, 1899, 2014, 2088
Bse3DI GCAATG 5 cut(s) 633, 915, 1434, 1652, 2220
BseBI CCWGG 4 cut(s) 806, 1903, 2195, 2387
BseDI CCNNGG 6 cut(s) 111, 499, 848, 1149, 1314, 1902
BseGI GGATG 8 cut(s) 910, 1084, 1191, 1486, 1611, 1819, 1876, 2382
BseLI CCNNNNNNNGG 7 cut(s) 586, 1120, 1320, 1640, 1810, 2009, 2200
BseMI GCAATG 5 cut(s) 633, 915, 1434, 1652, 2220
BseMII CTCAG 7 cut(s) 720, 861, 879, 1053, 1617, 1625, 1988
BseNI ACTGG 6 cut(s) 146, 1039, 1093, 1899, 2014, 2088
BseRI GAGGAG 4 cut(s) 399, 414, 980, 1079
BseSI GKGCMC 1 cut(s) 1113
BseXI GCAGC 6 cut(s) 352, 841, 1356, 1544, 1765, 2237
BseYI CCCAGC 2 cut(s) 1364, 1765
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 7 cut(s) 5, 116, 239, 794, 804, 1633, 2193
BsiHKAI GWGCWC 5 cut(s) 73, 270, 780, 1113, 1935
BsiHKCI CYCGRG 2 cut(s) 66, 773
BsiSI CCGG 2 cut(s) 50, 480
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 7 cut(s) 586, 1120, 1320, 1640, 1810, 2009, 2200
BsmAI GTCTC 6 cut(s) 304, 357, 480, 489, 763, 2095
BsmBI CGTCTC 2 cut(s) 357, 480
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 1108, 1781
BsnI GGCC 7 cut(s) 5, 116, 239, 794, 804, 1633, 2193
Bso31I GGTCTC 2 cut(s) 304, 489
BsoBI CYCGRG 2 cut(s) 66, 773
Bsp1286I GDGCHC 6 cut(s) 73, 159, 270, 780, 1113, 1935
Bsp1407I TGTACA 1 cut(s) 2170
Bsp143I GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
BspANI GGCC 7 cut(s) 5, 116, 239, 794, 804, 1633, 2193
BspCNI CTCAG 7 cut(s) 721, 862, 880, 1054, 1618, 1624, 1987
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 2 cut(s) 1935, 2154
BspLI GGNNCC 5 cut(s) 36, 519, 846, 1512, 1962
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 5 cut(s) 1505, 1518, 1787, 1994, 2259
BspTNI GGTCTC 2 cut(s) 304, 489
BsrDI GCAATG 5 cut(s) 633, 915, 1434, 1652, 2220
BsrGI TGTACA 1 cut(s) 2170
BsrI ACTGG 6 cut(s) 146, 1039, 1093, 1899, 2014, 2088
BssECI CCNNGG 6 cut(s) 111, 499, 848, 1149, 1314, 1902
BssMI GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
BssNI GRCGYC 2 cut(s) 225, 326
BssSI CACGAG 1 cut(s) 1856
BssT1I CCWWGG 3 cut(s) 111, 499, 1149
Bst2BI CACGAG 1 cut(s) 1856
Bst2UI CCWGG 4 cut(s) 806, 1903, 2195, 2387
Bst4CI ACNGT 3 cut(s) 103, 1115, 2347
Bst6I CTCTTC 1 cut(s) 1659
BstACI GRCGYC 2 cut(s) 225, 326
BstAPI GCANNNNNTGC 2 cut(s) 1651, 2231
BstAUI TGTACA 1 cut(s) 2170
BstBAI YACGTR 1 cut(s) 285
BstC8I GCNNGC 4 cut(s) 395, 815, 819, 1652
BstEII GGTNACC 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 1808
BstF5I GGATG 8 cut(s) 910, 1084, 1191, 1486, 1611, 1819, 1876, 2382
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 3 cut(s) 279, 1417, 1915
BstKTI GATC 5 cut(s) 1230, 1513, 1795, 2002, 2254
BstMAI GTCTC 6 cut(s) 304, 357, 480, 489, 763, 2095
BstMBI GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
BstNI CCWGG 4 cut(s) 806, 1903, 2195, 2387
BstNSI RCATGY 3 cut(s) 1503, 1919, 2317
BstPI GGTNACC 1 cut(s) 97
BstSCI CCNGG 5 cut(s) 478, 804, 1901, 2193, 2385
BstSFI CTRYAG 1 cut(s) 1208
BstSLI GKGCMC 1 cut(s) 1113
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 6 cut(s) 352, 841, 1356, 1544, 1765, 2237
BstV2I GAAGAC 2 cut(s) 206, 360
BstX2I RGATCY 3 cut(s) 1510, 1999, 2251
BstYI RGATCY 3 cut(s) 1510, 1999, 2251
BsuI GTATCC 1 cut(s) 1909
BsuRI GGCC 7 cut(s) 5, 116, 239, 794, 804, 1633, 2193
BtgZI GCGATG 1 cut(s) 1550
BtsCI GGATG 8 cut(s) 910, 1084, 1191, 1486, 1611, 1819, 1876, 2382
BtsI GCAGTG 2 cut(s) 1015, 2103
BtsIMutI CAGTG 2 cut(s) 1015, 2103
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 4 cut(s) 395, 815, 819, 1652
CciI TCATGA 2 cut(s) 1935, 2154
CfoI GCGC 3 cut(s) 279, 1417, 1915
Cfr13I GGNCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
CseI GACGC 3 cut(s) 233, 315, 1861
Csp6I GTAC 7 cut(s) 139, 405, 449, 1339, 1828, 2171, 2348
CviAII CATG 9 cut(s) 163, 1500, 1770, 1916, 1936, 2117, 2155, 2231, 2314
CviQI GTAC 7 cut(s) 139, 405, 449, 1339, 1828, 2171, 2348
DpnI GATC 5 cut(s) 1229, 1512, 1794, 2001, 2253
DpnII GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
DriI GACNNNNNGTC 1 cut(s) 724
EaeI YGGCCR 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 1659
Eam1105I GACNNNNNGTC 1 cut(s) 724
EarI CTCTTC 1 cut(s) 1659
EciI GGCGGA 2 cut(s) 507, 1339
Ecl136II GAGCTC 2 cut(s) 71, 1933
Eco130I CCWWGG 3 cut(s) 111, 499, 1149
Eco147I AGGCCT 2 cut(s) 794, 2193
Eco24I GRGCYC 3 cut(s) 73, 159, 1935
Eco31I GGTCTC 2 cut(s) 304, 489
Eco47I GGWCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
Eco53kI GAGCTC 2 cut(s) 71, 1933
Eco57I CTGAAG 1 cut(s) 912
Eco72I CACGTG 1 cut(s) 285
Eco88I CYCGRG 2 cut(s) 66, 773
Eco91I GGTNACC 1 cut(s) 97
EcoICRI GAGCTC 2 cut(s) 71, 1933
EcoNI CCTNNNNNAGG 1 cut(s) 1808
EcoO109I RGGNCCY 3 cut(s) 845, 1718, 2326
EcoO65I GGTNACC 1 cut(s) 97
EcoRII CCWGG 4 cut(s) 804, 1901, 2193, 2385
EcoT14I CCWWGG 3 cut(s) 111, 499, 1149
EcoT38I GRGCYC 3 cut(s) 73, 159, 1935
ErhI CCWWGG 3 cut(s) 111, 499, 1149
Esp3I CGTCTC 2 cut(s) 357, 480
FaeI CATG 9 cut(s) 166, 1503, 1773, 1919, 1939, 2120, 2158, 2234, 2317
FaqI GGGAC 1 cut(s) 173
FatI CATG 9 cut(s) 162, 1499, 1769, 1915, 1935, 2116, 2154, 2230, 2313
FauI CCCGC 2 cut(s) 1463, 2040
FbaI TGATCA 1 cut(s) 1227
FblI GTMKAC 1 cut(s) 2044
FokI GGATG 8 cut(s) 917, 1091, 1198, 1493, 1618, 1826, 1883, 2389
FriOI GRGCYC 3 cut(s) 73, 159, 1935
FspBI CTAG 5 cut(s) 894, 1521, 1568, 1818, 2351
GlaI GCGC 3 cut(s) 278, 1416, 1914
GsaI CCCAGC 2 cut(s) 1368, 1769
GsuI CTGGAG 2 cut(s) 1056, 1454
HaeIII GGCC 7 cut(s) 5, 116, 239, 794, 804, 1633, 2193
HapII CCGG 2 cut(s) 50, 480
HgaI GACGC 3 cut(s) 233, 315, 1861
HhaI GCGC 3 cut(s) 279, 1417, 1915
Hin1I GRCGYC 2 cut(s) 225, 326
Hin1II CATG 9 cut(s) 166, 1503, 1773, 1919, 1939, 2120, 2158, 2234, 2317
Hin6I GCGC 3 cut(s) 277, 1415, 1913
HinP1I GCGC 3 cut(s) 277, 1415, 1913
HincII GTYRAC 1 cut(s) 1446
HindII GTYRAC 1 cut(s) 1446
HindIII AAGCTT 2 cut(s) 650, 2237
HpaII CCGG 2 cut(s) 50, 480
HphI GGTGA 3 cut(s) 91, 289, 1201
Hpy166II GTNNAC 5 cut(s) 1032, 1111, 1446, 2045, 2171
Hpy188III TCNNGA 5 cut(s) 252, 1558, 1613, 1936, 2155
Hpy8I GTNNAC 5 cut(s) 1032, 1111, 1446, 2045, 2171
Hpy99I CGWCG 6 cut(s) 227, 325, 331, 364, 1054, 2267
HpyCH4III ACNGT 3 cut(s) 103, 1115, 2347
HpyCH4IV ACGT 2 cut(s) 186, 284
HpySE526I ACGT 2 cut(s) 186, 284
Hsp92I GRCGYC 2 cut(s) 225, 326
Hsp92II CATG 9 cut(s) 166, 1503, 1773, 1919, 1939, 2120, 2158, 2234, 2317
HspAI GCGC 3 cut(s) 277, 1415, 1913
Ksp22I TGATCA 1 cut(s) 1227
Kzo9I GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
LmnI GCTCC 7 cut(s) 427, 697, 1005, 1066, 1351, 1377, 1930
Lsp1109I GCAGC 6 cut(s) 352, 841, 1356, 1544, 1765, 2237
LweI GCATC 6 cut(s) 847, 895, 1069, 1335, 1804, 2326
MaeI CTAG 5 cut(s) 894, 1521, 1568, 1818, 2351
MaeII ACGT 2 cut(s) 186, 284
MaeIII GTNAC 4 cut(s) 97, 1084, 1267, 2005
MalI GATC 5 cut(s) 1229, 1512, 1794, 2001, 2253
MboI GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
MflI RGATCY 3 cut(s) 1510, 1999, 2251
MhlI GDGCHC 6 cut(s) 73, 159, 270, 780, 1113, 1935
MluCI AATT 9 cut(s) 292, 949, 1276, 1294, 1399, 1638, 1756, 2022, 2143
MlyI GAGTC 5 cut(s) 139, 479, 752, 893, 1180
MmeI TCCRAC 1 cut(s) 612
MseI TTAA 9 cut(s) 654, 978, 990, 1239, 1637, 1704, 1925, 1989, 2075
MslI CAYNNNNRTG 2 cut(s) 302, 1843
MspI CCGG 2 cut(s) 50, 480
MspR9I CCNGG 5 cut(s) 480, 806, 1903, 2195, 2387
Mva1269I GAATGC 2 cut(s) 1108, 1781
MvaI CCWGG 4 cut(s) 806, 1903, 2195, 2387
MvnI CGCG 1 cut(s) 279
NciI CCSGG 1 cut(s) 480
NdeII GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
NlaIII CATG 9 cut(s) 166, 1503, 1773, 1919, 1939, 2120, 2158, 2234, 2317
NlaIV GGNNCC 5 cut(s) 36, 519, 846, 1512, 1962
NmeAIII GCCGAG 4 cut(s) 215, 780, 829, 907
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 3 cut(s) 1503, 1919, 2317
OliI CACNNNNGTG 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 773
PagI TCATGA 2 cut(s) 1935, 2154
PceI AGGCCT 2 cut(s) 794, 2193
PcsI WCGNNNNNNNCGW 2 cut(s) 356, 518
PctI GAATGC 2 cut(s) 1108, 1781
PfeI GAWTC 7 cut(s) 541, 547, 1177, 1540, 1554, 2133, 2363
PflMI CCANNNNNTGG 2 cut(s) 586, 1640
PleI GAGTC 5 cut(s) 139, 478, 751, 892, 1179
PmaCI CACGTG 1 cut(s) 285
PmlI CACGTG 1 cut(s) 285
PpsI GAGTC 5 cut(s) 139, 478, 751, 892, 1179
Ppu21I YACGTR 1 cut(s) 285
PpuMI RGGWCCY 3 cut(s) 845, 1718, 2326
PshBI ATTAAT 2 cut(s) 1637, 1925
Psp124BI GAGCTC 2 cut(s) 73, 1935
Psp5II RGGWCCY 3 cut(s) 845, 1718, 2326
Psp6I CCWGG 4 cut(s) 804, 1901, 2193, 2385
PspCI CACGTG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 97
PspFI CCCAGC 2 cut(s) 1364, 1765
PspGI CCWGG 4 cut(s) 804, 1901, 2193, 2385
PspN4I GGNNCC 5 cut(s) 36, 519, 846, 1512, 1962
PspPI GGNCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
PspPPI RGGWCCY 3 cut(s) 845, 1718, 2326
PspXI VCTCGAGB 1 cut(s) 773
PsrI GAACNNNNNNTAC 2 cut(s) 68, 100
PsuI RGATCY 3 cut(s) 1510, 1999, 2251
RsaI GTAC 7 cut(s) 140, 406, 450, 1340, 1829, 2172, 2349
RsaNI GTAC 7 cut(s) 139, 405, 449, 1339, 1828, 2171, 2348
RseI CAYNNNNRTG 2 cut(s) 302, 1843
SacI GAGCTC 2 cut(s) 73, 1935
SaqAI TTAA 9 cut(s) 654, 978, 990, 1239, 1637, 1704, 1925, 1989, 2075
Sau3AI GATC 5 cut(s) 1227, 1510, 1792, 1999, 2251
Sau96I GGNCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
ScaI AGTACT 1 cut(s) 2349
SchI GAGTC 5 cut(s) 139, 479, 752, 893, 1180
ScrFI CCNGG 5 cut(s) 480, 806, 1903, 2195, 2387
SduI GDGCHC 6 cut(s) 73, 159, 270, 780, 1113, 1935
SfaNI GCATC 6 cut(s) 847, 895, 1069, 1335, 1804, 2326
SfcI CTRYAG 1 cut(s) 1208
Sfr274I CTCGAG 1 cut(s) 773
SinI GGWCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 2 cut(s) 302, 1843
SmlI CTYRAG 5 cut(s) 206, 272, 417, 773, 2182
SmoI CTYRAG 5 cut(s) 206, 272, 417, 773, 2182
Sse9I AATT 9 cut(s) 292, 949, 1276, 1294, 1399, 1638, 1756, 2022, 2143
SseBI AGGCCT 2 cut(s) 794, 2193
SspMI CTAG 5 cut(s) 894, 1521, 1568, 1818, 2351
SstI GAGCTC 2 cut(s) 73, 1935
StuI AGGCCT 2 cut(s) 794, 2193
StyD4I CCNGG 5 cut(s) 478, 804, 1901, 2193, 2385
StyI CCWWGG 3 cut(s) 111, 499, 1149
TaaI ACNGT 3 cut(s) 103, 1115, 2347
TaiI ACGT 2 cut(s) 189, 287
TaqI TCGA 4 cut(s) 242, 767, 774, 1052
TasI AATT 9 cut(s) 292, 949, 1276, 1294, 1399, 1638, 1756, 2022, 2143
TatI WGTACW 4 cut(s) 448, 1338, 2170, 2347
TauI GCSGC 4 cut(s) 65, 282, 340, 492
TfiI GAWTC 7 cut(s) 541, 547, 1177, 1540, 1554, 2133, 2363
Tru1I TTAA 9 cut(s) 654, 978, 990, 1239, 1637, 1704, 1925, 1989, 2075
Tru9I TTAA 9 cut(s) 654, 978, 990, 1239, 1637, 1704, 1925, 1989, 2075
TscAI CASTG 2 cut(s) 1015, 2103
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 6 cut(s) 340, 829, 1369, 1532, 1778, 2225
Tsp45I GTSAC 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 2 cut(s) 1015, 2103
Van91I CCANNNNNTGG 2 cut(s) 586, 1640
VneI GTGCAC 1 cut(s) 1109
VpaK11BI GGWCC 7 cut(s) 34, 108, 518, 845, 1718, 1960, 2326
VspI ATTAAT 2 cut(s) 1637, 1925
XagI CCTNNNNNAGG 1 cut(s) 1808
XapI RAATTY 2 cut(s) 292, 1294
XceI RCATGY 3 cut(s) 1503, 1919, 2317
XhoI CTCGAG 1 cut(s) 773
XmiI GTMKAC 1 cut(s) 2044
XspI CTAG 5 cut(s) 894, 1521, 1568, 1818, 2351
ZrmI AGTACT 1 cut(s) 2349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.