pycom01g23100

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000119
Physical Location & Seq
Reverse (-)
20539990 .. 20540444
455 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23100.2

Sequence Viewer

Length: 408 bp
ATGAATGAGACAGTGTTGACGTTGATGTGCGACTACCTGAAGACAGTGACATACATTGAGAACAGCTTCGTTTTCCGAATGGGAGATCCGCTCGACTGCATGCTGTTTATTGTCGAGGGGACAATGTGGACCTACGCGTCTAGAAAATGGCACTTTTATGGGGAAGAACTTCTCGATTGGGCATCACACACTTTCACCAAACTTCCAGTCTCCAGCAAACATGTCAAAAGTCAGACAAAAGTAGAAGCATTTGTGCTCATGGCCAAGGACTTGGAAGTTGTCGTCTACAGATACAAACAATGTTGGGACTTGGTATATTCTAACAATCTTAAAGAGTGGTACTTTCTACCTTCCGTCGTTTCCGTACCAAGGTGCAACAACGCCCATCCTCGTCCCCGGCTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

136

Amino Acids

16.02

Weight (kDa)

6.89

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
AccBSI CCGCTC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 341, 366
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 2 cut(s) 135, 220
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 2, 214
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 261
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp700I GAANNNNTTC 2 cut(s) 65, 168
AspS9I GGNCC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 129
BalI TGGCCA 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 1 cut(s) 393
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 2, 214
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpmI CTGGAG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 397
BsaJI CCNNGG 3 cut(s) 264, 368, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 264, 368, 395
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 397
BslFI GGGAC 3 cut(s) 133, 320, 378
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 2 cut(s) 2, 214
BsmFI GGGAC 3 cut(s) 133, 320, 378
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 263
BspFNI CGCG 1 cut(s) 137
BspPI GGATC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 264, 368, 395
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 2 cut(s) 264, 368
Bst4CI ACNGT 2 cut(s) 13, 46
BstC8I GCNNGC 1 cut(s) 101
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 137
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 2, 214
BstMBI GATC 1 cut(s) 85
BstNSI RCATGY 2 cut(s) 103, 224
BstSCI CCNGG 1 cut(s) 395
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 18, 51
Cac8I GCNNGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 129
CseI GACGC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 340, 365
CviAII CATG 3 cut(s) 100, 221, 259
CviJI RGCY 3 cut(s) 66, 263, 400
CviKI_1 RGCY 3 cut(s) 66, 263, 400
CviQI GTAC 2 cut(s) 340, 365
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 261
Eco130I CCWWGG 2 cut(s) 264, 368
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 264, 368
ErhI CCWWGG 2 cut(s) 264, 368
FaeI CATG 3 cut(s) 103, 224, 262
FaiI YATR 6 cut(s) 52, 101, 159, 222, 260, 316
FaqI GGGAC 3 cut(s) 133, 320, 378
FatI CATG 3 cut(s) 99, 220, 258
FblI GTMKAC 1 cut(s) 285
FokI GGATG 1 cut(s) 372
FspBI CTAG 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 397
HgaI GACGC 1 cut(s) 126
Hin1II CATG 3 cut(s) 103, 224, 262
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HpaII CCGG 1 cut(s) 397
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 18, 129, 286
Hpy188I TCNGA 2 cut(s) 77, 234
Hpy188III TCNNGA 2 cut(s) 141, 173
Hpy8I GTNNAC 3 cut(s) 18, 129, 286
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 1 cut(s) 360
HpyCH4III ACNGT 2 cut(s) 13, 46
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 99, 375
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 3 cut(s) 103, 224, 262
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 4 cut(s) 50, 219, 226, 386
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 91
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 52, 176
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 263
MluI ACGCGT 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 263
MnlI CCTC 2 cut(s) 109, 399
Mox20I TGGCCA 1 cut(s) 263
MroXI GAANNNNTTC 2 cut(s) 65, 168
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 1 cut(s) 397
MvnI CGCG 1 cut(s) 137
NciI CCSGG 1 cut(s) 397
NdeII GATC 1 cut(s) 85
NlaIII CATG 3 cut(s) 103, 224, 262
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 2 cut(s) 103, 224
PaeI GCATGC 1 cut(s) 103
PciI ACATGT 1 cut(s) 220
PdmI GAANNNNTTC 2 cut(s) 65, 168
PscI ACATGT 1 cut(s) 220
PspPI GGNCC 1 cut(s) 129
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 341, 366
RsaNI GTAC 2 cut(s) 340, 365
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 1 cut(s) 258
SetI ASST 6 cut(s) 23, 39, 68, 134, 352, 374
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 156
SphI GCATGC 1 cut(s) 103
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 395
StyI CCWWGG 2 cut(s) 264, 368
TaaI ACNGT 2 cut(s) 13, 46
TaiI ACGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 93, 114, 174
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 18, 51
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 343, 352
TspRI CASTG 2 cut(s) 18, 51
VpaK11BI GGWCC 1 cut(s) 129
XbaI TCTAGA 1 cut(s) 140
XceI RCATGY 2 cut(s) 103, 224
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 2 cut(s) 65, 168
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.