Rmu_co8309149.1_g000001

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8309149.1
OG0000119
Physical Location & Seq
Reverse (-)
305 .. 802
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8309149.1_g000001.1.cds

Sequence Viewer

Length: 498 bp
atgatatgtgactatctgaagcctgtgacataccctgagcatcactatgttgccaaggtggatgaaccagttgatcagatggtgcttgtcagagaaggaactatgtggatctactcgtcgaatactagtactccatccaagatccacaggacggttgagaacggtggcatttatggagatgaacaacttctgagttgggcgtcgaaggacatgcaacacgtctcgtttgaaaacttcccgatctcaaaagaaaatgtgaaatgtcatacaaaagtggaagggtttgctatcgcggccaaggacttgaaagatgtggccaccaagtgcaaaatgttttggaattacgatgatcctcgagaggagagggtggcgagctctaccataggaaggacattccgtcgaaaccgcaataacccaaataggccggctaccgtaggagtaggagctgcgacctcgtcaagaacaggaattgagtatcagcagatcgagagaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

165

Amino Acids

18.82

Weight (kDa)

7.73

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 293
AciI CCGC 2 cut(s) 293, 406
AclWI GGATC 3 cut(s) 116, 136, 344
AcoI YGGCCR 2 cut(s) 294, 315
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 151, 387
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 2 cut(s) 230, 307
AhdI GACNNNNNGTC 1 cut(s) 396
AhlI ACTAGT 1 cut(s) 125
AjiI CACGTC 1 cut(s) 220
AluBI AGCT 2 cut(s) 375, 446
AluI AGCT 2 cut(s) 375, 446
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 3 cut(s) 116, 136, 344
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 3 cut(s) 294, 315, 422
ApeKI GCWGC 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 354
BalI TGGCCA 1 cut(s) 317
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 73, 142
BcgI CGANNNNNNTGC 2 cut(s) 193, 227
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 1 cut(s) 126
BisI GCNGC 2 cut(s) 294, 447
BlsI GCNGC 2 cut(s) 295, 448
BmcAI AGTACT 1 cut(s) 130
BmeRI GACNNNNNGTC 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 354
BmgBI CACGTC 1 cut(s) 220
BmsI GCATC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 54, 297
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 387
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 54, 297
BseGI GGATG 2 cut(s) 67, 134
BseLI CCNNNNNNNGG 2 cut(s) 151, 387
BseMII CTCAG 2 cut(s) 27, 182
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 296, 317, 424
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 151, 387
BsmAI GTCTC 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 226
BsnI GGCC 3 cut(s) 296, 317, 424
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 6 cut(s) 73, 108, 141, 240, 349, 483
BspACI CCGC 2 cut(s) 293, 406
BspANI GGCC 3 cut(s) 296, 317, 424
BspCNI CTCAG 2 cut(s) 28, 183
BspFNI CGCG 1 cut(s) 293
BspPI GGATC 3 cut(s) 116, 136, 344
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 54, 297
BssMI GATC 6 cut(s) 73, 108, 141, 240, 349, 483
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 2 cut(s) 54, 297
Bst4CI ACNGT 3 cut(s) 154, 164, 433
BstACI GRCGYC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 373, 426
BstDEI CTNAG 2 cut(s) 36, 191
BstF5I GGATG 2 cut(s) 67, 134
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 6 cut(s) 76, 111, 144, 243, 352, 486
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 6 cut(s) 73, 108, 141, 240, 349, 483
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 214
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 2 cut(s) 108, 141
BstYI RGATCY 2 cut(s) 108, 141
BsuRI GGCC 3 cut(s) 296, 317, 424
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 2 cut(s) 67, 134
Cac8I GCNNGC 2 cut(s) 373, 426
Cfr10I RCCGGY 1 cut(s) 424
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 211
CviJI RGCY 7 cut(s) 22, 296, 317, 375, 424, 428, 446
CviKI_1 RGCY 7 cut(s) 22, 296, 317, 375, 424, 428, 446
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 2 cut(s) 36, 191
DpnI GATC 6 cut(s) 75, 110, 143, 242, 351, 485
DpnII GATC 6 cut(s) 73, 108, 141, 240, 349, 483
DraIII CACNNNGTG 1 cut(s) 324
DriI GACNNNNNGTC 1 cut(s) 396
EaeI YGGCCR 2 cut(s) 294, 315
Eam1105I GACNNNNNGTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 375
Eco130I CCWWGG 2 cut(s) 54, 297
Eco24I GRGCYC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 54, 297
EcoT38I GRGCYC 1 cut(s) 377
ErhI CCWWGG 2 cut(s) 54, 297
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 1 cut(s) 214
FaiI YATR 8 cut(s) 7, 31, 48, 104, 174, 212, 267, 383
FatI CATG 1 cut(s) 210
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 294, 447
FokI GGATG 2 cut(s) 74, 121
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 294, 447
FspBI CTAG 1 cut(s) 126
GluI GCNGC 2 cut(s) 294, 447
HaeIII GGCC 3 cut(s) 296, 317, 424
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 1 cut(s) 214
HpaII CCGG 1 cut(s) 425
Hpy188I TCNGA 4 cut(s) 18, 78, 92, 192
Hpy188III TCNNGA 4 cut(s) 238, 356, 459, 487
Hpy99I CGWCG 3 cut(s) 121, 205, 402
HpyAV CCTTC 4 cut(s) 89, 199, 272, 381
HpyCH4III ACNGT 3 cut(s) 154, 164, 433
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 214, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 2 cut(s) 36, 191
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 214
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 6 cut(s) 73, 108, 141, 240, 349, 483
LmnI GCTCC 1 cut(s) 443
LpnPI CCDG 6 cut(s) 36, 48, 81, 133, 438, 450
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 8, 25
MalI GATC 6 cut(s) 75, 110, 143, 242, 351, 485
MboI GATC 6 cut(s) 73, 108, 141, 240, 349, 483
MflI RGATCY 2 cut(s) 108, 141
MhlI GDGCHC 1 cut(s) 377
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 2 cut(s) 340, 468
MluNI TGGCCA 1 cut(s) 317
MnlI CCTC 4 cut(s) 352, 357, 363, 463
Mox20I TGGCCA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 293
NaeI GCCGGC 1 cut(s) 426
NdeII GATC 6 cut(s) 73, 108, 141, 240, 349, 483
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 8, 25
NspI RCATGY 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 354
PdiI GCCGGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 454
PkrI GCNGC 2 cut(s) 295, 448
Psp124BI GAGCTC 1 cut(s) 377
PsuI RGATCY 2 cut(s) 108, 141
PsyI GACNNNGTC 1 cut(s) 454
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 45
SacI GAGCTC 1 cut(s) 377
SatI GCNGC 2 cut(s) 294, 447
Sau3AI GATC 6 cut(s) 73, 108, 141, 240, 349, 483
ScaI AGTACT 1 cut(s) 130
SduI GDGCHC 1 cut(s) 377
SetI ASST 6 cut(s) 60, 222, 377, 448, 455, 497
SfaNI GCATC 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 2 cut(s) 340, 468
SsiI CCGC 2 cut(s) 293, 406
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 377
StyI CCWWGG 2 cut(s) 54, 297
TaaI ACNGT 3 cut(s) 154, 164, 433
TaiI ACGT 1 cut(s) 222
TaqI TCGA 5 cut(s) 119, 203, 355, 400, 486
TasI AATT 2 cut(s) 340, 468
TatI WGTACW 1 cut(s) 128
TauI GCSGC 1 cut(s) 296
TseFI GTSAC 2 cut(s) 8, 25
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 8, 25
TspDTI ATGAA 2 cut(s) 78, 195
TspGWI ACGGA 1 cut(s) 386
Tth111I GACNNNGTC 1 cut(s) 454
XceI RCATGY 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.