RLG00000026242

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000119
Physical Location & Seq
Forward (+)
1515207 .. 1520592
5386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026242

Sequence Viewer

Length: 2274 bp
ATGTCAAAGACGCTGCACCCAACAAAGACGTCACATATCTGCTCGGCCTTGACGGCAACGGCATGCACCTGTTTTCCGACCACCGGTATACGAAGAAAACCGGAGGCCTTGAAGGCGCAGGGTAACCCCAAAGGCGAGGATCCGACTTCAAACCTGGTTGAGGTGGTGGAGGGCTCGGAGAACCCGAAGGGGGTCGGCGCCGGAGCTGGAGAATTCAGCGAAGAAGGCTCGGAGGTCGGCTTCGCGGATGTTGAATGCGGAGTGGAGATCGGAGGATTAGGAAGAAGAGGTCAAGGTTGTCGCCGTTACGGTTCGGAGCTCGACGGCGGTTCAGAAAATTGCGGGACTACGAAGACATTGCTTGGCTCTGTTAGTAATTCAGAAACCATTTCATCCAGCATAGAAGAAGGGCATAAAATAATTATGTCTAAACATCAGGGACCATACGATGAGAGCATCATCGAAATGAGTGTTACACCAGGTATAGGTTATGATTTCAGCAGTCCGGAGGCTCTACTGCAACATCCAGTACGGACACCTGAACCTGGAGAACCTCAAGCCAGCAACAAATGGAAGAGGCCAACAGCTGCGGAAATTCATTCAGTTTTGAATCCATGGTGGAATACGATACTGGTAACTTCATGTGTGATTGCAGTTTTATTTGATCCTTTGTTCTTTTACATTCCATACATCAAAGAGGAAGAAAAGTGCATGGGAATCGATAAAAAAGTGCGGACTGCAGCTCTGGTTTCCCGAACAGTCACGGACATCACTTTCCTAGTGCATATCATATACGAACTTCGTGAAGCTATCAAATTTGCAGCCTCAAAGGTTCCAAGGGATGCAAATTCGGATTGGGAATGGGAATCAGTATCCCGAGTTCAGATGATTCAGTTTGCAAAGGCATTTTCTCACAAGTTGTCATGGCGCTCTTTCCTAACCGACGTTTTCGCTATTTTCCCCATGCCACAACTGCTAATAGTAGGGTTGTTTTTCGAAATGGGAGGCAGTAACTATTTGGAGAGAAGAAAGATTCTTAGCGGTTTTCTTCTGGTCCAATATGTGCCAAGAATATATCGAATTTATCTATCATCTACCGTGGTTACACAGTCCACATTATGGGTTAAAGGTGTATTCAATTTTTTCCTCTACATTCTTGCTAGTCATGTACTAGGATCCTTTTGGTACTTCTTTGCTATTCAGCGAGAGACATCATGTTGGTACCGAACTTGCATTGATGAAAATCTATCAGAATCAAGATGTACTTTTTACTGTCATGACAAAAATGCATATATGACCGAAAAATTCAATAGAACTCTAGGAGAACTTTGCATTGTAAAAGTTCCATATAATGTGACTGATCCACCATTTGACTTTGGAATATTTTTTGATGCCCTCAAAAATGATATCCAGGGGCCAATAAATTTTCCAAAAAAGATTGGTTACTGTTTTTGGTGGGGCTTGCGAAACTTAAGTGATGGAGTTCATATGAAACAGATATATATGGCGAAGGCAACTACAAGAGCGGAGGAGGTAAGAGAGAAGATTCAGACCAAAAAGAACGATATAGAAAAGTGGATGGAAAAAAATGGTCTCCAAGATGACATGAAGGAAGAGATCATGAAAAACATCAAGCAAAAATTGGAAGAGGATATAAATGCAGATCTAGAGGATCTATTCTCTATTCTTCCGTGGTATACCAAGAAAGCTCTAAAGCGCGTTCTCTGCATGAGTGCGCTAAGAAAAGAACCAATGCTTAGCCAGATGGATGAAAAAGTTTTGAAAATGATGTGCGACTATCTGAAGCCGGTGAATTACCCAGAGAATACCCTGGTTTTTCAGATGGGAGAACCACTTGATCGAATGGTATTCATTACAGAAGGGTTTATGTGGACTTACACGACTGCTACTGAGAGTAGTCATTTTGGAAAAGCAACAGGACTGGCTACTTCTCCATCCATGGACACCTACTTCCTCAAGAAGGGTGATTCTTATGGACACGCTCTTCTGCAGTTTGCATCATCATCTCTTGTGGCACTCCCTTCCTCAGCTGCAAATGTCCGGTGTCACACAAAGGTAGAGGCGTTTGTTCTCATGGCCAAGGACTTGAAAAACATAGTAACTAAATGCGAAAATTTTTGGCCTTTCGACTACAATGCTTCTAAAGATGAGGCGGTGGATCAGGTCACACCCCTGGGGCAGTTTCAGCAACAACAAATGCCAAAGAAGCGTGTATCAACATCGATCATCAACCCCACCGGCTGTAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

758

Amino Acids

85.48

Weight (kDa)

6.57

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
Acc65I GGTACC 1 cut(s) 1221
AccB1I GGYRCC 2 cut(s) 197, 1221
AccB7I CCANNNNNTGG 1 cut(s) 1119
AccBSI CCGCTC 1 cut(s) 1526
AccI GTMKAC 2 cut(s) 88, 1697
AccII CGCG 2 cut(s) 245, 1719
AccIII TCCGGA 1 cut(s) 505
AciI CCGC 9 cut(s) 245, 258, 327, 342, 590, 733, 1041, 1526, 2174
AclWI GGATC 8 cut(s) 134, 147, 659, 1170, 1183, 1355, 1680, 2187
AcoI YGGCCR 1 cut(s) 2097
AcsI RAATTY 8 cut(s) 212, 594, 815, 847, 1080, 1304, 1423, 2134
AcuI CTGAAG 1 cut(s) 1823
AcyI GRCGYC 2 cut(s) 29, 198
AfaI GTAC 5 cut(s) 531, 1170, 1187, 1223, 1264
AfiI CCNNNNNNNGG 7 cut(s) 83, 160, 190, 485, 545, 1119, 1981
AflII CTTAAG 1 cut(s) 1471
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 8 cut(s) 112, 150, 254, 610, 1138, 1309, 1783, 2110
AjnI CCWGG 6 cut(s) 153, 478, 544, 1410, 1830, 2193
AluBI AGCT 7 cut(s) 206, 319, 587, 743, 809, 1709, 2051
AluI AGCT 7 cut(s) 206, 319, 587, 743, 809, 1709, 2051
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 1202, 1598
AlwI GGATC 8 cut(s) 134, 147, 659, 1170, 1183, 1355, 1680, 2187
Ama87I CYCGRG 1 cut(s) 876
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 6 cut(s) 45, 105, 578, 1415, 2097, 2141
ApeKI GCWGC 5 cut(s) 13, 587, 740, 821, 2051
ApoI RAATTY 8 cut(s) 212, 594, 815, 847, 1080, 1304, 1423, 2134
AsiGI ACCGGT 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 1221
AspLEI GCGC 5 cut(s) 118, 200, 930, 1719, 1738
AspS9I GGNCC 3 cut(s) 440, 1054, 1415
AsuHPI GGTGA 2 cut(s) 1822, 1997
AsuII TTCGAA 1 cut(s) 996
AvaI CYCGRG 1 cut(s) 876
AvaII GGWCC 2 cut(s) 440, 1054
BalI TGGCCA 1 cut(s) 2099
BamHI GGATCC 2 cut(s) 139, 1175
BanI GGYRCC 2 cut(s) 197, 1221
BanII GRGCYC 2 cut(s) 176, 321
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 2047
BbvI GCAGC 4 cut(s) 574, 752, 833, 2038
BccI CCATC 5 cut(s) 1472, 1573, 1759, 1837, 1963
BceAI ACGGC 4 cut(s) 69, 75, 288, 340
BcgI CGANNNNNNTGC 6 cut(s) 340, 374, 700, 734, 2138, 2172
BciT130I CCWGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
BciVI GTATCC 1 cut(s) 883
BcoDI GTCTC 2 cut(s) 1202, 1598
BfaI CTAG 5 cut(s) 779, 1161, 1172, 1319, 1667
BfmI CTRYAG 3 cut(s) 738, 2009, 2263
BfoI RGCGCY 2 cut(s) 201, 931
BfrI CTTAAG 1 cut(s) 1471
BfuI GTATCC 1 cut(s) 883
BglI GCCNNNNNGGC 2 cut(s) 53, 113
BglII AGATCT 1 cut(s) 1663
BisI GCNGC 5 cut(s) 14, 588, 741, 822, 2052
BlpI GCTNAGC 1 cut(s) 1757
BlsI GCNGC 5 cut(s) 15, 589, 742, 823, 2053
Bme1390I CCNGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
Bme18I GGWCC 2 cut(s) 440, 1054
BmeT110I CYCGRG 1 cut(s) 876
BmgT120I GGNCC 3 cut(s) 440, 1054, 1415
BmiI GGNNCC 7 cut(s) 141, 199, 441, 834, 1177, 1223, 1416
BmrFI CCNGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
BmsI GCATC 4 cut(s) 465, 832, 1381, 2027
BpiI GAAGAC 1 cut(s) 359
BpmI CTGGAG 2 cut(s) 228, 567
Bpu10I CCTNAGC 1 cut(s) 2047
Bpu1102I GCTNAGC 1 cut(s) 1757
Bpu14I TTCGAA 1 cut(s) 996
BpuEI CTTGAG 2 cut(s) 540, 1961
Bsa29I ATCGAT 2 cut(s) 720, 2243
BsaBI GATNNNNATC 1 cut(s) 1242
BsaHI GRCGYC 2 cut(s) 29, 198
BsaI GGTCTC 1 cut(s) 1598
BsaWI WCCGGW 4 cut(s) 83, 100, 505, 2061
Bsc4I CCNNNNNNNGG 7 cut(s) 83, 160, 190, 485, 545, 1119, 1981
Bse118I RCCGGY 3 cut(s) 83, 1807, 2258
Bse1I ACTGG 3 cut(s) 527, 636, 1947
Bse3DI GCAATG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 1242
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
BseCI ATCGAT 2 cut(s) 720, 2243
BseGI GGATG 7 cut(s) 253, 392, 523, 847, 1584, 1774, 1955
BseJI GATNNNNATC 1 cut(s) 1242
BseLI CCNNNNNNNGG 7 cut(s) 83, 160, 190, 485, 545, 1119, 1981
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 1902, 2061
BseNI ACTGG 3 cut(s) 527, 636, 1947
BseRI GAGGAG 1 cut(s) 1544
BseXI GCAGC 4 cut(s) 574, 752, 833, 2038
Bsh1236I CGCG 2 cut(s) 245, 1719
BshFI GGCC 6 cut(s) 47, 107, 580, 1417, 2099, 2143
BshNI GGYRCC 2 cut(s) 197, 1221
BshTI ACCGGT 1 cut(s) 83
BshVI ATCGAT 2 cut(s) 720, 2243
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 876
BsiSI CCGG 7 cut(s) 84, 101, 201, 506, 1808, 2062, 2259
BslFI GGGAC 2 cut(s) 358, 453
BslI CCNNNNNNNGG 7 cut(s) 83, 160, 190, 485, 545, 1119, 1981
BsmAI GTCTC 2 cut(s) 1202, 1598
BsmFI GGGAC 2 cut(s) 358, 453
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 6 cut(s) 47, 107, 580, 1417, 2099, 2143
Bso31I GGTCTC 1 cut(s) 1598
BsoBI CYCGRG 1 cut(s) 876
Bsp119I TTCGAA 1 cut(s) 996
Bsp1286I GDGCHC 2 cut(s) 176, 321
Bsp13I TCCGGA 1 cut(s) 505
Bsp1720I GCTNAGC 1 cut(s) 1757
Bsp19I CCATGG 2 cut(s) 614, 1959
BspACI CCGC 9 cut(s) 245, 258, 327, 342, 590, 733, 1041, 1526, 2174
BspANI GGCC 6 cut(s) 47, 107, 580, 1417, 2099, 2143
BspCNI CTCAG 2 cut(s) 1903, 2060
BspDI ATCGAT 2 cut(s) 720, 2243
BspEI TCCGGA 1 cut(s) 505
BspFNI CGCG 2 cut(s) 245, 1719
BspHI TCATGA 2 cut(s) 1276, 1620
BspLI GGNNCC 7 cut(s) 141, 199, 441, 834, 1177, 1223, 1416
BspMAI CTGCAG 2 cut(s) 742, 2013
BspPI GGATC 8 cut(s) 134, 147, 659, 1170, 1183, 1355, 1680, 2187
BspQI GCTCTTC 1 cut(s) 2010
BspT104I TTCGAA 1 cut(s) 996
BspT107I GGYRCC 2 cut(s) 197, 1221
BspTI CTTAAG 1 cut(s) 1471
BspTNI GGTCTC 1 cut(s) 1598
BsrBI CCGCTC 1 cut(s) 1526
BsrDI GCAATG 1 cut(s) 356
BsrFI RCCGGY 3 cut(s) 83, 1807, 2258
BsrI ACTGG 3 cut(s) 527, 636, 1947
BssAI RCCGGY 3 cut(s) 83, 1807, 2258
BssNAI GTATAC 2 cut(s) 89, 1698
BssNI GRCGYC 2 cut(s) 29, 198
BssT1I CCWWGG 4 cut(s) 614, 836, 1959, 2100
Bst1107I GTATAC 2 cut(s) 89, 1698
Bst2UI CCWGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
Bst4CI ACNGT 6 cut(s) 311, 760, 1099, 1110, 1274, 1448
Bst6I CTCTTC 5 cut(s) 280, 569, 1608, 1641, 2010
BstACI GRCGYC 2 cut(s) 29, 198
BstAFI CTTAAG 1 cut(s) 1471
BstBI TTCGAA 1 cut(s) 996
BstC8I GCNNGC 3 cut(s) 64, 562, 1463
BstDEI CTNAG 5 cut(s) 1037, 1739, 1757, 1911, 2047
BstDSI CCRYGG 4 cut(s) 614, 1098, 1691, 1959
BstEII GGTNACC 1 cut(s) 122
BstENI CCTNNNNNAGG 2 cut(s) 158, 1979
BstF5I GGATG 7 cut(s) 253, 392, 523, 847, 1584, 1774, 1955
BstFNI CGCG 2 cut(s) 245, 1719
BstH2I RGCGCY 2 cut(s) 201, 931
BstHHI GCGC 5 cut(s) 118, 200, 930, 1719, 1738
BstMAI GTCTC 2 cut(s) 1202, 1598
BstMWI GCNNNNNNNGC 7 cut(s) 53, 113, 225, 973, 1725, 2206, 2227
BstNI CCWGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
BstNSI RCATGY 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 6 cut(s) 153, 478, 544, 1410, 1830, 2193
BstSFI CTRYAG 3 cut(s) 738, 2009, 2263
BstUI CGCG 2 cut(s) 245, 1719
BstV1I GCAGC 4 cut(s) 574, 752, 833, 2038
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 4 cut(s) 139, 1175, 1663, 1672
BstYI RGATCY 4 cut(s) 139, 1175, 1663, 1672
BstZ17I GTATAC 2 cut(s) 89, 1698
Bsu15I ATCGAT 2 cut(s) 720, 2243
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 6 cut(s) 47, 107, 580, 1417, 2099, 2143
BsuTUI ATCGAT 2 cut(s) 720, 2243
BtgI CCRYGG 4 cut(s) 614, 1098, 1691, 1959
BtsCI GGATG 7 cut(s) 253, 392, 523, 847, 1584, 1774, 1955
Cac8I GCNNGC 3 cut(s) 64, 562, 1463
CciI TCATGA 2 cut(s) 1276, 1620
CfoI GCGC 5 cut(s) 118, 200, 930, 1719, 1738
Cfr10I RCCGGY 3 cut(s) 83, 1807, 2258
Cfr13I GGNCC 3 cut(s) 440, 1054, 1415
ClaI ATCGAT 2 cut(s) 720, 2243
CseI GACGC 1 cut(s) 19
CsiI ACCWGGT 2 cut(s) 153, 478
Csp6I GTAC 5 cut(s) 530, 1169, 1186, 1222, 1263
CspAI ACCGGT 1 cut(s) 83
CviQI GTAC 5 cut(s) 530, 1169, 1186, 1222, 1263
DdeI CTNAG 5 cut(s) 1037, 1739, 1757, 1911, 2047
DinI GGCGCC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 2097
Eam1104I CTCTTC 5 cut(s) 280, 569, 1608, 1641, 2010
EarI CTCTTC 5 cut(s) 280, 569, 1608, 1641, 2010
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 4 cut(s) 614, 836, 1959, 2100
Eco147I AGGCCT 1 cut(s) 107
Eco24I GRGCYC 2 cut(s) 176, 321
Eco31I GGTCTC 1 cut(s) 1598
Eco32I GATATC 1 cut(s) 1408
Eco47I GGWCC 2 cut(s) 440, 1054
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 1823
Eco88I CYCGRG 1 cut(s) 876
Eco91I GGTNACC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 319
EcoNI CCTNNNNNAGG 2 cut(s) 158, 1979
EcoO65I GGTNACC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 6 cut(s) 153, 478, 544, 1410, 1830, 2193
EcoRV GATATC 1 cut(s) 1408
EcoT14I CCWWGG 4 cut(s) 614, 836, 1959, 2100
EcoT22I ATGCAT 1 cut(s) 1291
EcoT38I GRGCYC 2 cut(s) 176, 321
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
ErhI CCWWGG 4 cut(s) 614, 836, 1959, 2100
FalI AAGNNNNNCTT 2 cut(s) 1249, 1281
FaqI GGGAC 2 cut(s) 358, 453
FauI CCCGC 1 cut(s) 335
FauNDI CATATG 1 cut(s) 1488
FblI GTMKAC 2 cut(s) 88, 1697
Fnu4HI GCNGC 5 cut(s) 14, 588, 741, 822, 2052
FokI GGATG 7 cut(s) 260, 379, 510, 854, 1591, 1781, 1942
FriOI GRGCYC 2 cut(s) 176, 321
Fsp4HI GCNGC 5 cut(s) 14, 588, 741, 822, 2052
FspBI CTAG 5 cut(s) 779, 1161, 1172, 1319, 1667
GlaI GCGC 5 cut(s) 117, 199, 929, 1718, 1737
GluI GCNGC 5 cut(s) 14, 588, 741, 822, 2052
GsuI CTGGAG 2 cut(s) 228, 567
HaeII RGCGCY 2 cut(s) 201, 931
HaeIII GGCC 6 cut(s) 47, 107, 580, 1417, 2099, 2143
HapII CCGG 7 cut(s) 84, 101, 201, 506, 1808, 2062, 2259
HgaI GACGC 1 cut(s) 19
HhaI GCGC 5 cut(s) 118, 200, 930, 1719, 1738
Hin1I GRCGYC 2 cut(s) 29, 198
Hin6I GCGC 5 cut(s) 116, 198, 928, 1717, 1736
HinP1I GCGC 5 cut(s) 116, 198, 928, 1717, 1736
HinfI GANTC 8 cut(s) 610, 717, 866, 889, 1033, 1253, 1546, 1988
HpaII CCGG 7 cut(s) 84, 101, 201, 506, 1808, 2062, 2259
HphI GGTGA 2 cut(s) 1822, 1997
Hpy166II GTNNAC 4 cut(s) 89, 1113, 1698, 1893
Hpy188III TCNNGA 9 cut(s) 506, 753, 803, 876, 1257, 1277, 1621, 1667, 1978
Hpy8I GTNNAC 4 cut(s) 89, 1113, 1698, 1893
Hpy99I CGWCG 2 cut(s) 326, 947
HpyAV CCTTC 9 cut(s) 106, 181, 218, 401, 1504, 1603, 1874, 1975, 2052
HpyCH4III ACNGT 6 cut(s) 311, 760, 1099, 1110, 1274, 1448
HpyCH4IV ACGT 2 cut(s) 29, 945
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 113, 225, 973, 1725, 2206, 2227
HpyF3I CTNAG 5 cut(s) 1037, 1739, 1757, 1911, 2047
HpySE526I ACGT 2 cut(s) 29, 945
Hsp92I GRCGYC 2 cut(s) 29, 198
HspAI GCGC 5 cut(s) 116, 198, 928, 1717, 1736
KasI GGCGCC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 505
KpnI GGTACC 1 cut(s) 1225
LguI GCTCTTC 1 cut(s) 2010
LmnI GCTCC 2 cut(s) 203, 316
Lsp1109I GCAGC 4 cut(s) 574, 752, 833, 2038
LweI GCATC 4 cut(s) 465, 832, 1381, 2027
MabI ACCWGGT 2 cut(s) 153, 478
MaeI CTAG 5 cut(s) 779, 1161, 1172, 1319, 1667
MaeII ACGT 2 cut(s) 29, 945
MbiI CCGCTC 1 cut(s) 1526
MflI RGATCY 4 cut(s) 139, 1175, 1663, 1672
MhlI GDGCHC 2 cut(s) 176, 321
MlsI TGGCCA 1 cut(s) 2099
MluNI TGGCCA 1 cut(s) 2099
Mly113I GGCGCC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 101, 167
Mox20I TGGCCA 1 cut(s) 2099
Mph1103I ATGCAT 1 cut(s) 1291
MroI TCCGGA 1 cut(s) 505
MscI TGGCCA 1 cut(s) 2099
MseI TTAA 2 cut(s) 1125, 1472
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 2099
MspA1I CMGCKG 2 cut(s) 587, 2051
MspCI CTTAAG 1 cut(s) 1471
MspI CCGG 7 cut(s) 84, 101, 201, 506, 1808, 2062, 2259
MspR9I CCNGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
MvnI CGCG 2 cut(s) 245, 1719
MwoI GCNNNNNNNGC 7 cut(s) 53, 113, 225, 973, 1725, 2206, 2227
NarI GGCGCC 1 cut(s) 198
NcoI CCATGG 2 cut(s) 614, 1959
NdeI CATATG 1 cut(s) 1488
NlaIV GGNNCC 7 cut(s) 141, 199, 441, 834, 1177, 1223, 1416
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 5 cut(s) 30, 760, 1354, 2066, 2185
NsiI ATGCAT 1 cut(s) 1291
NspI RCATGY 1 cut(s) 66
NspV TTCGAA 1 cut(s) 996
PaeI GCATGC 1 cut(s) 66
PagI TCATGA 2 cut(s) 1276, 1620
PasI CCCWGGG 1 cut(s) 2194
PceI AGGCCT 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 2010
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 8 cut(s) 610, 717, 866, 889, 1033, 1253, 1546, 1988
PflMI CCANNNNNTGG 1 cut(s) 1119
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 5 cut(s) 15, 589, 742, 823, 2053
PluTI GGCGCC 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 6 cut(s) 153, 478, 544, 1410, 1830, 2193
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 6 cut(s) 153, 478, 544, 1410, 1830, 2193
PspN4I GGNNCC 7 cut(s) 141, 199, 441, 834, 1177, 1223, 1416
PspPI GGNCC 3 cut(s) 440, 1054, 1415
PsrI GAACNNNNNNTAC 2 cut(s) 864, 896
PstI CTGCAG 2 cut(s) 742, 2013
PsuI RGATCY 4 cut(s) 139, 1175, 1663, 1672
PvuII CAGCTG 2 cut(s) 587, 2051
RsaI GTAC 5 cut(s) 531, 1170, 1187, 1223, 1264
RsaNI GTAC 5 cut(s) 530, 1169, 1186, 1222, 1263
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 2010
SaqAI TTAA 2 cut(s) 1125, 1472
SatI GCNGC 5 cut(s) 14, 588, 741, 822, 2052
Sau96I GGNCC 3 cut(s) 440, 1054, 1415
ScrFI CCNGG 6 cut(s) 155, 480, 546, 1412, 1832, 2195
SduI GDGCHC 2 cut(s) 176, 321
SexAI ACCWGGT 2 cut(s) 153, 478
SfaNI GCATC 4 cut(s) 465, 832, 1381, 2027
SfcI CTRYAG 3 cut(s) 738, 2009, 2263
SfoI GGCGCC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 996
SinI GGWCC 2 cut(s) 440, 1054
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 3 cut(s) 555, 1471, 1976
SmoI CTYRAG 3 cut(s) 555, 1471, 1976
SphI GCATGC 1 cut(s) 66
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 9 cut(s) 245, 258, 327, 342, 590, 733, 1041, 1526, 2174
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 1 cut(s) 1383
SspMI CTAG 5 cut(s) 779, 1161, 1172, 1319, 1667
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 6 cut(s) 153, 478, 544, 1410, 1830, 2193
StyI CCWWGG 4 cut(s) 614, 836, 1959, 2100
TaaI ACNGT 6 cut(s) 311, 760, 1099, 1110, 1274, 1448
TaiI ACGT 2 cut(s) 32, 948
TaqI TCGA 8 cut(s) 321, 462, 720, 996, 1078, 1861, 2148, 2243
TaqII GACCGA 1 cut(s) 1313
TatI WGTACW 2 cut(s) 1168, 1262
TfiI GAWTC 8 cut(s) 610, 717, 866, 889, 1033, 1253, 1546, 1988
Tru1I TTAA 2 cut(s) 1125, 1472
Tru9I TTAA 2 cut(s) 1125, 1472
TseFI GTSAC 5 cut(s) 30, 760, 1354, 2066, 2185
TseI GCWGC 5 cut(s) 13, 587, 740, 821, 2051
Tsp45I GTSAC 5 cut(s) 30, 760, 1354, 2066, 2185
TspGWI ACGGA 3 cut(s) 547, 779, 1680
Van91I CCANNNNNTGG 1 cut(s) 1119
Vha464I CTTAAG 1 cut(s) 1471
VpaK11BI GGWCC 2 cut(s) 440, 1054
XagI CCTNNNNNAGG 2 cut(s) 158, 1979
XapI RAATTY 8 cut(s) 212, 594, 815, 847, 1080, 1304, 1423, 2134
XbaI TCTAGA 1 cut(s) 1666
XceI RCATGY 1 cut(s) 66
XmiI GTMKAC 2 cut(s) 88, 1697
XspI CTAG 5 cut(s) 779, 1161, 1172, 1319, 1667
ZraI GACGTC 1 cut(s) 30
Zsp2I ATGCAT 1 cut(s) 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.