Rorug02G0166400

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000119
Physical Location & Seq
Reverse (-)
14899825 .. 14901977
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0166400.1

Sequence Viewer

Length: 2079 bp
ATGAAATTGTTGAATGAGACAATCTCAAAGTCCTTTCCTCTACTACTATGCTTCAACAGAACCCGCTCATTTTCTTCTCAAACAAACATAAATAAACCGTTAACTCAAAAATCTTTCTTCAAATCAAACACCAAAGACGGCCTGGTTAGCCGTTTATGCAAAGACGGGAAATTTACGCAAGCCATAGACATTCTTTGCGACCAAAACCGCTTAGCCGAAGCAGTTCAATTACTCAACCACATTGTTAAACCCTCTACTTCTCTATACTCGACCCTCTTACAGCATTGTCTTCAGCACCGTGCTCTTGATCAGGCCAAATTGGTCCATTCCCACACAAGAGTCTCCGGTTTCGAGCCCGGGCTGTTCCTTTGTAACCGTTTCATTGATTTGTACGCAAAATGTGGGAGTCTTTTGGATGCCCAGAAGGTGTTTGATGAAATGCCTGAGAGGGATTTGTGTTCTTGGAATACTATGATTTCTGGGTATGCCAAAGTGGGGAAGATCGGTGAAGCTAGGAAACTGTTTGATGAAATGCCTCAAAGAGATAATTTTTCTTGGACGGCGATGATTTCCGGGTACGTTCGGCACGAAAGGCCTAATGAGGCTTTGGAGTTGTATAGGATGATGCAGAGACGAGAGAGTTCAAAGTCTAATAAGTTCACTGTGTCTAGCGTTCTTGCTGCTTCAGCAGCTATTCACAGTTTGAGAATGGGGAAGGAGATTCATGGTTATATAACGCGAACTGGGTTGGACTCGGATGAGGTGGTTTGGAGTGCCTTGTCGGATATGTATGGGAAATGTGGGAGTATAGAGGAAGCTAGGCGCATTTTCGATAAGATGGTGAATCGAGATGTTGTGACATGGACGGCGATGATTGGGAGATACTTTGAGGATGGGAAGAAGGGCGAGGGACTTGCCTTGTTTTCGGAGTTGATGAAATCCGGGATTAGACCTAATGAGTTCACGTTTGCAGGGGTTTTGAATGCCTGTGCTGATCATGCTACTGAGAACCTAGGCAAGCAGGTACATGGATACATGACACGGATGGGATTCGATCCCTTTTCATTTGCAGCAGGTGCCCTTGTTCATATGTATTCAAAGTGTGGAAACACTGCTAATGCGAATAAGGTGTTTAAAGGGATGCCCAGTCCAGATTTGGTTTCGTGGACTTCCCTCATTGTTGGATATGCTCGGAATGGTCAAGCTGACGAAGCTCTTCAGTTGTTTGAGTCACTACTTAAATCAGGTACTCGGCCTGATCACGTAACATTTGTAGGTGTTCTTTCAGCTTGTACTCATGCTGGATTAGTAGATAGAGGACTTGAATATTTCCATTCTCTTAAGGCAAAACATGGGTTAAAACATACTGCGGACCACTATGCATGCGTAGTTGATTTGTTAGCCCGAGCTGGCCGATTTGATGAAGCCGAGAATATTATAAGTGAAATGCCCATGAAGCCTAGTAAGTTCTTGTGGGCCTCCTTGATTGGTGGTTGTAGAATTCATGGAAACGTCAAGCTGGCAAAGCGAGCTGCAGAGGCATTGTTTGAGATAGAACCTGAGAATCCTGCTACTTATGTTACTCTGGCCAACATTTACGCTACCACTGGCATGTGGAGTGAAGTAACAAAGGTTAGAAAGGAAATGGATGAAAGTGGTATAATAAAGAAACCAGGTCTGAGTTGGATTGAGATCAAGAGAGAGATGCATGTTTTCTTAGTTGGAGATCAGTCTCACCCCAGATACAATGAAATAGATCACTTTTTGAGTGAAATTTCAAAGAGGATGAAAGAAGAAGGCTATGTTCCTGACACGAACTTTGTGCTGCATGATGTTGAGGAGGAGCAGAAAGAGCAGAACCTCTCGTACCACAGTGAGAAGCTTGCAGTTGCATTCGGGATTATTTCTACTCCACTAGGAACTCCAATCAAGGTTTTTAAGAATATAAGAACATGTGTAGATTGTCATAATGCAATTAAATTTATTTCCAAGATTTCCGACAGAAAAATAATAGTGCGGGATTCAAATCGATTCCATTGTTTTGAGGATGGGAAGTGTTCATGTCTCGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

692

Amino Acids

78.03

Weight (kDa)

8.47

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 150 - 178 1.9e-07 PPR repeat
PPR_2 PF13041 151 - 181 8.8e-08 PPR repeat family
PPR PF01535 154 - 181 6.8e-09 PPR repeat
PPR_2 PF13041 182 - 226 5e-07 PPR repeat family
PPR PF01535 184 - 212 7.6e-08 PPR repeat
PPR_2 PF13041 283 - 331 9.4e-11 PPR repeat family
PPR_long PF17177 304 - 448 9.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 384 - 431 6.1e-11 PPR repeat family
PPR PF01535 387 - 416 2.9e-07 PPR repeat
E_motif PF20431 502 - 564 2.7e-21 E motif
DYW_deaminase PF14432 600 - 692 3.3e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1439
AarI CACCTGC 1 cut(s) 1064
Acc36I ACCTGC 2 cut(s) 1012, 1064
AccB1I GGYRCC 1 cut(s) 1076
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 1 cut(s) 739
AciI CCGC 4 cut(s) 64, 208, 1370, 2017
AclWI GGATC 1 cut(s) 1049
AcoI YGGCCR 2 cut(s) 1411, 1587
AcsI RAATTY 4 cut(s) 170, 1500, 1773, 1979
AcuI CTGAAG 3 cut(s) 275, 669, 1202
AfaI GTAC 6 cut(s) 392, 578, 1026, 1249, 1294, 1868
AfiI CCNNNNNNNGG 1 cut(s) 495
AflII CTTAAG 1 cut(s) 1340
AflIII ACRYGT 1 cut(s) 1952
AjnI CCWGG 2 cut(s) 141, 1672
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 5 cut(s) 11, 346, 625, 1737, 2069
AlwI GGATC 1 cut(s) 1049
Ama87I CYCGRG 2 cut(s) 356, 1404
AoxI GGCC 7 cut(s) 139, 312, 593, 1253, 1411, 1476, 1587
ApeKI GCWGC 5 cut(s) 680, 689, 1070, 1532, 1825
ApoI RAATTY 4 cut(s) 170, 1500, 1773, 1979
ArsI GACNNNNNNTTYG 2 cut(s) 1802, 1834
Asp700I GAANNNNTTC 2 cut(s) 222, 1215
AspA2I CCTAGG 1 cut(s) 1012
AspLEI GCGC 1 cut(s) 825
AspS9I GGNCC 3 cut(s) 322, 1372, 1476
AsuC2I CCSGG 4 cut(s) 357, 358, 574, 943
AsuHPI GGTGA 3 cut(s) 518, 853, 1727
AvaI CYCGRG 2 cut(s) 356, 1404
AvaII GGWCC 2 cut(s) 322, 1372
AvrII CCTAGG 1 cut(s) 1012
BaeGI GKGCMC 1 cut(s) 1081
BalI TGGCCA 1 cut(s) 1589
BanI GGYRCC 1 cut(s) 1076
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 5 cut(s) 667, 701, 1082, 1519, 1812
BccI CCATC 4 cut(s) 832, 887, 1039, 2042
BceAI ACGGC 4 cut(s) 135, 154, 576, 882
BcgI CGANNNNNNTGC 4 cut(s) 896, 930, 1804, 1838
BciT130I CCWGG 2 cut(s) 143, 1674
BciVI GTATCC 1 cut(s) 1025
BclI TGATCA 3 cut(s) 307, 994, 1258
BcnI CCSGG 4 cut(s) 357, 358, 574, 943
BcoDI GTCTC 5 cut(s) 11, 346, 625, 1737, 2069
BfaI CTAG 6 cut(s) 513, 669, 819, 1013, 1461, 1916
BfmI CTRYAG 1 cut(s) 1533
BfrI CTTAAG 1 cut(s) 1340
BfuAI ACCTGC 2 cut(s) 1012, 1064
BfuI GTATCC 1 cut(s) 1025
BisI GCNGC 5 cut(s) 681, 690, 1071, 1533, 1826
BlnI CCTAGG 1 cut(s) 1012
BlpI GCTNAGC 1 cut(s) 211
BlsI GCNGC 5 cut(s) 682, 691, 1072, 1534, 1827
Bme1390I CCNGG 6 cut(s) 143, 357, 358, 574, 943, 1674
Bme18I GGWCC 2 cut(s) 322, 1372
BmeT110I CYCGRG 2 cut(s) 356, 1404
BmgT120I GGNCC 3 cut(s) 322, 1372, 1476
BmiI GGNNCC 1 cut(s) 1078
BmrFI CCNGG 6 cut(s) 143, 357, 358, 574, 943, 1674
BmrI ACTGGG 2 cut(s) 753, 1140
BmsI GCATC 4 cut(s) 406, 615, 1131, 1695
BmuI ACTGGG 2 cut(s) 753, 1140
BpiI GAAGAC 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu1102I GCTNAGC 1 cut(s) 211
BpuMI CCSGG 4 cut(s) 357, 358, 574, 943
Bsa29I ATCGAT 1 cut(s) 2029
BsaAI YACGTR 1 cut(s) 1264
BsaBI GATNNNNATC 2 cut(s) 1691, 2025
BsaJI CCNNGG 2 cut(s) 356, 1012
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse1I ACTGG 3 cut(s) 748, 1146, 1612
Bse8I GATNNNNATC 2 cut(s) 1691, 2025
BseBI CCWGG 2 cut(s) 143, 1674
BseCI ATCGAT 1 cut(s) 2029
BseDI CCNNGG 2 cut(s) 356, 1012
BseGI GGATG 9 cut(s) 421, 627, 763, 898, 1050, 1146, 1654, 1791, 2053
BseJI GATNNNNATC 2 cut(s) 1691, 2025
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMII CTCAG 4 cut(s) 435, 996, 1551, 1670
BseNI ACTGG 3 cut(s) 748, 1146, 1612
BseRI GAGGAG 2 cut(s) 1853, 1856
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 5 cut(s) 667, 701, 1082, 1519, 1812
Bsh1236I CGCG 1 cut(s) 739
BshFI GGCC 7 cut(s) 141, 314, 595, 1255, 1413, 1478, 1589
BshNI GGYRCC 1 cut(s) 1076
BshVI ATCGAT 1 cut(s) 2029
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 2 cut(s) 356, 1404
BsiSI CCGG 4 cut(s) 345, 357, 573, 942
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 5 cut(s) 11, 346, 625, 1737, 2069
BsmBI CGTCTC 1 cut(s) 625
BsmFI GGGAC 1 cut(s) 924
BsmI GAATGC 2 cut(s) 988, 1892
BsnI GGCC 7 cut(s) 141, 314, 595, 1255, 1413, 1478, 1589
BsoBI CYCGRG 2 cut(s) 356, 1404
Bsp1286I GDGCHC 3 cut(s) 304, 357, 1081
Bsp143I GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
Bsp1720I GCTNAGC 1 cut(s) 211
BspACI CCGC 4 cut(s) 64, 208, 1370, 2017
BspANI GGCC 7 cut(s) 141, 314, 595, 1255, 1413, 1478, 1589
BspCNI CTCAG 4 cut(s) 436, 997, 1552, 1671
BspDI ATCGAT 1 cut(s) 2029
BspFNI CGCG 1 cut(s) 739
BspLI GGNNCC 1 cut(s) 1078
BspMAI CTGCAG 1 cut(s) 1537
BspMI ACCTGC 2 cut(s) 1012, 1064
BspPI GGATC 1 cut(s) 1049
BspQI GCTCTTC 1 cut(s) 1221
BspT107I GGYRCC 1 cut(s) 1076
BspTI CTTAAG 1 cut(s) 1340
BsrBI CCGCTC 1 cut(s) 66
BsrI ACTGG 3 cut(s) 748, 1146, 1612
BssECI CCNNGG 2 cut(s) 356, 1012
BssMI GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
BssT1I CCWWGG 1 cut(s) 1012
Bst2UI CCWGG 2 cut(s) 143, 1674
Bst4CI ACNGT 7 cut(s) 99, 299, 377, 522, 664, 701, 1874
Bst6I CTCTTC 1 cut(s) 1221
BstAFI CTTAAG 1 cut(s) 1340
BstAPI GCANNNNNTGC 1 cut(s) 1076
BstBAI YACGTR 1 cut(s) 1264
BstC8I GCNNGC 7 cut(s) 180, 1019, 1384, 1411, 1521, 1530, 1884
BstDEI CTNAG 6 cut(s) 211, 444, 1005, 1560, 1679, 1717
BstF5I GGATG 9 cut(s) 421, 627, 763, 898, 1050, 1146, 1654, 1791, 2053
BstFNI CGCG 1 cut(s) 739
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 8 cut(s) 310, 504, 997, 1057, 1261, 1695, 1729, 1759
BstMAI GTCTC 5 cut(s) 11, 346, 625, 1737, 2069
BstMBI GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
BstNI CCWGG 2 cut(s) 143, 1674
BstNSI RCATGY 4 cut(s) 1386, 1615, 1712, 1956
BstSCI CCNGG 6 cut(s) 141, 355, 356, 572, 941, 1672
BstSFI CTRYAG 1 cut(s) 1533
BstSLI GKGCMC 1 cut(s) 1081
BstUI CGCG 1 cut(s) 739
BstV1I GCAGC 5 cut(s) 667, 701, 1082, 1519, 1812
BstV2I GAAGAC 1 cut(s) 281
Bsu15I ATCGAT 1 cut(s) 2029
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 7 cut(s) 141, 314, 595, 1255, 1413, 1478, 1589
BsuTUI ATCGAT 1 cut(s) 2029
BtgZI GCGATG 2 cut(s) 578, 884
BtsCI GGATG 9 cut(s) 421, 627, 763, 898, 1050, 1146, 1654, 1791, 2053
BtsI GCAGTG 1 cut(s) 1110
BtsIMutI CAGTG 4 cut(s) 660, 1110, 1605, 1879
BveI ACCTGC 2 cut(s) 1012, 1064
Cac8I GCNNGC 7 cut(s) 180, 1019, 1384, 1411, 1521, 1530, 1884
CfoI GCGC 1 cut(s) 825
Cfr13I GGNCC 3 cut(s) 322, 1372, 1476
Cfr9I CCCGGG 1 cut(s) 356
ClaI ATCGAT 1 cut(s) 2029
CsiI ACCWGGT 1 cut(s) 1672
Csp6I GTAC 6 cut(s) 391, 577, 1025, 1248, 1293, 1867
CviQI GTAC 6 cut(s) 391, 577, 1025, 1248, 1293, 1867
DdeI CTNAG 6 cut(s) 211, 444, 1005, 1560, 1679, 1717
DpnI GATC 8 cut(s) 309, 503, 996, 1056, 1260, 1694, 1728, 1758
DpnII GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
DraI TTTAAA 1 cut(s) 1135
EaeI YGGCCR 2 cut(s) 1411, 1587
Eam1104I CTCTTC 1 cut(s) 1221
EarI CTCTTC 1 cut(s) 1221
Eco130I CCWWGG 1 cut(s) 1012
Eco147I AGGCCT 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 322, 1372
Eco57I CTGAAG 3 cut(s) 275, 669, 1202
Eco88I CYCGRG 2 cut(s) 356, 1404
EcoRI GAATTC 1 cut(s) 1500
EcoRII CCWGG 2 cut(s) 141, 1672
EcoT14I CCWWGG 1 cut(s) 1012
EcoT22I ATGCAT 2 cut(s) 1384, 1710
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 1012
Esp3I CGTCTC 1 cut(s) 625
FaqI GGGAC 1 cut(s) 924
FauI CCCGC 2 cut(s) 71, 2010
FauNDI CATATG 1 cut(s) 1089
FbaI TGATCA 3 cut(s) 307, 994, 1258
Fnu4HI GCNGC 5 cut(s) 681, 690, 1071, 1533, 1826
FokI GGATG 9 cut(s) 428, 634, 770, 905, 1057, 1153, 1661, 1798, 2060
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 5 cut(s) 681, 690, 1071, 1533, 1826
FspBI CTAG 6 cut(s) 513, 669, 819, 1013, 1461, 1916
GlaI GCGC 1 cut(s) 824
GluI GCNGC 5 cut(s) 681, 690, 1071, 1533, 1826
HaeIII GGCC 7 cut(s) 141, 314, 595, 1255, 1413, 1478, 1589
HapII CCGG 4 cut(s) 345, 357, 573, 942
HhaI GCGC 1 cut(s) 825
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 1880
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 4 cut(s) 345, 357, 573, 942
HphI GGTGA 3 cut(s) 518, 853, 1727
Hpy166II GTNNAC 4 cut(s) 102, 660, 963, 1167
Hpy188I TCNGA 6 cut(s) 757, 784, 928, 1194, 1680, 1999
Hpy188III TCNNGA 7 cut(s) 305, 848, 1151, 1696, 1808, 1897, 2066
Hpy8I GTNNAC 4 cut(s) 102, 660, 963, 1167
HpyAV CCTTC 4 cut(s) 418, 709, 895, 1790
HpyCH4III ACNGT 7 cut(s) 99, 299, 377, 522, 664, 701, 1874
HpyCH4IV ACGT 4 cut(s) 579, 965, 1263, 1512
HpyF3I CTNAG 6 cut(s) 211, 444, 1005, 1560, 1679, 1717
HpySE526I ACGT 4 cut(s) 579, 965, 1263, 1512
HspAI GCGC 1 cut(s) 823
Ksp22I TGATCA 3 cut(s) 307, 994, 1258
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
LguI GCTCTTC 1 cut(s) 1221
LmnI GCTCC 1 cut(s) 1843
Lsp1109I GCAGC 5 cut(s) 667, 701, 1082, 1519, 1812
LweI GCATC 4 cut(s) 406, 615, 1131, 1695
MabI ACCWGGT 1 cut(s) 1672
MaeI CTAG 6 cut(s) 513, 669, 819, 1013, 1461, 1916
MaeII ACGT 4 cut(s) 579, 965, 1263, 1512
MaeIII GTNAC 6 cut(s) 371, 856, 1230, 1264, 1579, 1624
MalI GATC 8 cut(s) 309, 503, 996, 1056, 1260, 1694, 1728, 1758
MbiI CCGCTC 1 cut(s) 66
MboI GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
MboII GAAGA 7 cut(s) 66, 109, 281, 511, 910, 1208, 1805
MhlI GDGCHC 3 cut(s) 304, 357, 1081
MlsI TGGCCA 1 cut(s) 1589
MluCI AATT 9 cut(s) 5, 170, 227, 317, 547, 1500, 1773, 1974, 1979
MluNI TGGCCA 1 cut(s) 1589
MlyI GAGTC 4 cut(s) 348, 415, 746, 1238
MmeI TCCRAC 6 cut(s) 729, 762, 1162, 1664, 1702, 2022
Mox20I TGGCCA 1 cut(s) 1589
Mph1103I ATGCAT 2 cut(s) 1384, 1710
MroXI GAANNNNTTC 2 cut(s) 222, 1215
MscI TGGCCA 1 cut(s) 1589
MseI TTAA 8 cut(s) 101, 246, 1134, 1239, 1341, 1358, 1938, 1977
MslI CAYNNNNRTG 1 cut(s) 1610
Msp20I TGGCCA 1 cut(s) 1589
MspCI CTTAAG 1 cut(s) 1340
MspI CCGG 4 cut(s) 345, 357, 573, 942
MspR9I CCNGG 6 cut(s) 143, 357, 358, 574, 943, 1674
Mva1269I GAATGC 2 cut(s) 988, 1892
MvaI CCWGG 2 cut(s) 143, 1674
MvnI CGCG 1 cut(s) 739
NciI CCSGG 4 cut(s) 357, 358, 574, 943
NdeI CATATG 1 cut(s) 1089
NdeII GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
NlaIV GGNNCC 1 cut(s) 1078
NmeAIII GCCGAG 2 cut(s) 1231, 1453
NmuCI GTSAC 2 cut(s) 856, 1230
NsiI ATGCAT 2 cut(s) 1384, 1710
NspI RCATGY 4 cut(s) 1386, 1615, 1712, 1956
PaeI GCATGC 1 cut(s) 1386
PaqCI CACCTGC 1 cut(s) 1064
PceI AGGCCT 1 cut(s) 595
PciI ACATGT 1 cut(s) 1952
PciSI GCTCTTC 1 cut(s) 1221
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PctI GAATGC 2 cut(s) 988, 1892
PdmI GAANNNNTTC 2 cut(s) 222, 1215
PfeI GAWTC 6 cut(s) 721, 844, 1050, 1564, 2021, 2031
PfoI TCCNGGA 1 cut(s) 941
PkrI GCNGC 5 cut(s) 682, 691, 1072, 1534, 1827
PleI GAGTC 4 cut(s) 347, 414, 746, 1237
PpsI GAGTC 4 cut(s) 347, 414, 746, 1237
Ppu21I YACGTR 1 cut(s) 1264
PscI ACATGT 1 cut(s) 1952
PsiI TTATAA 1 cut(s) 1439
Psp6I CCWGG 2 cut(s) 141, 1672
PspGI CCWGG 2 cut(s) 141, 1672
PspN4I GGNNCC 1 cut(s) 1078
PspPI GGNCC 3 cut(s) 322, 1372, 1476
PsrI GAACNNNNNNTAC 2 cut(s) 1850, 1882
PstI CTGCAG 1 cut(s) 1537
RsaI GTAC 6 cut(s) 392, 578, 1026, 1249, 1294, 1868
RsaNI GTAC 6 cut(s) 391, 577, 1025, 1248, 1293, 1867
RseI CAYNNNNRTG 1 cut(s) 1610
SapI GCTCTTC 1 cut(s) 1221
SaqAI TTAA 8 cut(s) 101, 246, 1134, 1239, 1341, 1358, 1938, 1977
SatI GCNGC 5 cut(s) 681, 690, 1071, 1533, 1826
Sau3AI GATC 8 cut(s) 307, 501, 994, 1054, 1258, 1692, 1726, 1756
Sau96I GGNCC 3 cut(s) 322, 1372, 1476
SchI GAGTC 4 cut(s) 348, 415, 746, 1238
ScrFI CCNGG 6 cut(s) 143, 357, 358, 574, 943, 1674
SduI GDGCHC 3 cut(s) 304, 357, 1081
SexAI ACCWGGT 1 cut(s) 1672
SfaNI GCATC 4 cut(s) 406, 615, 1131, 1695
SfcI CTRYAG 1 cut(s) 1533
SinI GGWCC 2 cut(s) 322, 1372
SmaI CCCGGG 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 1610
SmlI CTYRAG 1 cut(s) 1340
SmoI CTYRAG 1 cut(s) 1340
SphI GCATGC 1 cut(s) 1386
SrfI GCCCGGGC 1 cut(s) 358
Sse9I AATT 9 cut(s) 5, 170, 227, 317, 547, 1500, 1773, 1974, 1979
SseBI AGGCCT 1 cut(s) 595
SsiI CCGC 4 cut(s) 64, 208, 1370, 2017
SspI AATATT 2 cut(s) 1328, 1435
SspMI CTAG 6 cut(s) 513, 669, 819, 1013, 1461, 1916
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 6 cut(s) 141, 355, 356, 572, 941, 1672
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 7 cut(s) 99, 299, 377, 522, 664, 701, 1874
TaiI ACGT 4 cut(s) 582, 968, 1266, 1515
TaqI TCGA 7 cut(s) 269, 351, 831, 847, 1053, 2029, 2067
TasI AATT 9 cut(s) 5, 170, 227, 317, 547, 1500, 1773, 1974, 1979
TatI WGTACW 1 cut(s) 1292
TfiI GAWTC 6 cut(s) 721, 844, 1050, 1564, 2021, 2031
Tru1I TTAA 8 cut(s) 101, 246, 1134, 1239, 1341, 1358, 1938, 1977
Tru9I TTAA 8 cut(s) 101, 246, 1134, 1239, 1341, 1358, 1938, 1977
TscAI CASTG 4 cut(s) 667, 1117, 1612, 1879
TseFI GTSAC 2 cut(s) 856, 1230
TseI GCWGC 5 cut(s) 680, 689, 1070, 1532, 1825
Tsp45I GTSAC 2 cut(s) 856, 1230
TspGWI ACGGA 1 cut(s) 1057
TspMI CCCGGG 1 cut(s) 356
TspRI CASTG 4 cut(s) 667, 1117, 1612, 1879
Vha464I CTTAAG 1 cut(s) 1340
VpaK11BI GGWCC 2 cut(s) 322, 1372
XapI RAATTY 4 cut(s) 170, 1500, 1773, 1979
XceI RCATGY 4 cut(s) 1386, 1615, 1712, 1956
XcmI CCANNNNNNNNNTGG 3 cut(s) 139, 1153, 1680
XmaI CCCGGG 1 cut(s) 356
XmaJI CCTAGG 1 cut(s) 1012
XmnI GAANNNNTTC 2 cut(s) 222, 1215
XspI CTAG 6 cut(s) 513, 669, 819, 1013, 1461, 1916
Zsp2I ATGCAT 2 cut(s) 1384, 1710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.