Rw1G039310

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000119
Physical Location & Seq
Reverse (-)
66866394 .. 66868985
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039310.1

Sequence Viewer

Length: 1920 bp
ATGGCTATTAATCCAGACGACAGCCTCATCATAAGCATTACAGCAGGTTACACTTTAGAGAGTAAAGGGAGGCTGCAATCTCCTAAGACTCCTATGAACAGTGGAGGACATTCAATATTGTCAGAGACAAAATGGTGTACCTTTAAGGAATTTTTTGACCCCCAGGGGGCCTTCATTGCAATGTGGTATAAGATATTTGTGATTTCATGTCTGATTTTTGTAACCGCAGACCCTTTGTTCTTCTACATCCCCTACATCAACAAAGATAAAAAGGGCATTGATGGGGACAAGAGGGTGAGAACTGCAGCTCTAGTCCTCCGATCACTCACCGATATGACTTTCATAATGCATATTATACATGAAATTCGTGTTAGTATCAACACTGTGGTGTCAGAGATATCAAAAAGAGGAAAGCCAGGTTGGCCATGGAAAAAGGCAGAGTTACTTGGCTTTGCCAAGGCAATATCTCAGAAGATGTCCTGGTTATCTATCTCCATCATTAGACTTTATAGCCATTCTTCCGATCCCACAAGTGGCGCTGCTGGTATTCTTTCTGAAAATGGATGGCTCAGATTACAGAAGGAAGATTTTAAACGGTTCCTGCTCTTTCAATATATGCCAAAGATTTATAGAATCTACCTTTCGTGTAAAGAACTTAAACAAACCGGAATATGGGCTAGAGGTGCATTCAATATTTTTCTCTACATCCTCGCTAGTCATCTGTTAATTTTTAGGTACTTCGTACTTGGAGCCTTTTGGTATTTCATTTCTATTCAACGAGAGACATCATGCTGGCACAGGGCTTGTGAAGGACATCCTAATATTATAGAATGTATGTCAACTTACTACTGTGATGACAGACCTAGAAATCAACAATATATCACACTCCTCAGCAAAAATTGCTCGGCTGCAATTCCATCAAATGCAGCACAATTTAATTTTGGAATCTTCCTTAATGCCCTTGAGCCCGATTTGTCTGATTTTCCCAAGAAGTTCTTTTACTCTTTCTGGTGGGGTCTGCGAAATCTAAGTTCTCTTGGTCAAAATTTGGAAACGAGTACCTATGTGTGCGAAAACTGCTTCGCAATCGTTATATCTCTAATTGGTTTGCTGCTAGTTTTGTATCTTATTGGAAATACCAACAATGCAGCTCTCCACTGTTTAACGTATATACAGTTGGCAACTACGAAATCGGAAGAGATAAGACAGAAGATGATAATGAAAGAGCTAGAGATACAATGGTGGATGTCCAGAAATCATCTCCCTAACGATATGAAGACAGTGATCATCGAAAACGTAAGACAGAAATTGGAAGAAAACAAAGATGTTCATGTGGAGAATCTACTCTCTATTCTTCCCCTGAAGGACACAAGGTCCATAAAGCGCCTTCTCTGCATGGACTCACTTAAGAAAGTACCGATGCTTCGATATATGGATGAAAGTGTGTTAAAACTCATCTGCGACAATCTGAAACCAGTAATCTACACAGAGAACAGTTATGTAATTCGAGCAGGAGAACCACTTGATCTAATGCTCTTCAACGCAGAAGGCATTATATGGACTTACACAACAAGTACTGATGGTTCAATAAAATTGGAAGAAATTTTGACTTGGGCTGCCTCATACATGTCCTTCTCCGACCTCCCTATCTCGACCCAAAATGTAAAATGCCATACAAAAGTTGAAGCCTTTTCTCTCATGGCAAAGGACTTGAAGGCTGTGGTCTCCAAATTCTGGTGGCATTTCAGCAAGGCGGTTCCCGATTTGAACAAAAACAATTCTCAGCTGGAGGAATTGGCTCTTTCTTCCATAAGAGCCCGTCGCCGCAATCGATTAAAGAAGCATATAAAAGCTCCTCAATTGTCTACTTACTCCCAAGAACTTGGGTACCTGCGGCTATACCCTGTTAATCGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

639

Amino Acids

73.76

Weight (kDa)

9.16

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 35, 1899
Acc65I GGTACC 1 cut(s) 1887
AccB1I GGYRCC 1 cut(s) 1887
AccB7I CCANNNNNTGG 1 cut(s) 1734
AccI GTMKAC 1 cut(s) 1865
AciI CCGC 4 cut(s) 225, 1754, 1825, 1894
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 422
AcsI RAATTY 5 cut(s) 149, 363, 1045, 1602, 1730
AcuI CTGAAG 1 cut(s) 1382
AfaI GTAC 7 cut(s) 139, 737, 744, 1060, 1416, 1576, 1889
AfiI CCNNNNNNNGG 4 cut(s) 166, 533, 672, 1734
AflII CTTAAG 1 cut(s) 1406
AflIII ACRYGT 1 cut(s) 1626
AgsI TTSAA 9 cut(s) 114, 611, 691, 776, 1540, 1587, 1685, 1714, 1768
AhdI GACNNNNNGTC 1 cut(s) 1372
AjnI CCWGG 3 cut(s) 162, 415, 479
AjuI GAANNNNNNNTTGG 2 cut(s) 403, 435
AleI CACNNNNGTG 1 cut(s) 386
AluBI AGCT 5 cut(s) 308, 1151, 1228, 1786, 1853
AluI AGCT 5 cut(s) 308, 1151, 1228, 1786, 1853
Alw26I GTCTC 3 cut(s) 119, 776, 1729
AlwI GGATC 1 cut(s) 518
AoxI GGCC 2 cut(s) 168, 422
ApeKI GCWGC 8 cut(s) 73, 305, 539, 908, 926, 1111, 1148, 1616
ApoI RAATTY 5 cut(s) 149, 363, 1045, 1602, 1730
AseI ATTAAT 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 1887
AspLEI GCGC 2 cut(s) 539, 1386
AspS9I GGNCC 2 cut(s) 168, 1374
AsuHPI GGTGA 2 cut(s) 307, 319
AvaII GGWCC 1 cut(s) 1374
BaeI ACNNNNGTAYC 4 cut(s) 1226, 1259, 1871, 1904
BalI TGGCCA 1 cut(s) 424
BanI GGYRCC 1 cut(s) 1887
BanII GRGCYC 2 cut(s) 969, 1819
BarI GAAGNNNNNNTAC 4 cut(s) 983, 1015, 1407, 1439
BbsI GAAGAC 1 cut(s) 1283
BbvCI CCTCAGC 1 cut(s) 890
BbvI GCAGC 8 cut(s) 60, 317, 526, 895, 938, 1098, 1160, 1603
BccI CCATC 5 cut(s) 275, 503, 558, 925, 1574
BciT130I CCWGG 3 cut(s) 164, 417, 481
BclI TGATCA 1 cut(s) 1284
BcoDI GTCTC 3 cut(s) 119, 776, 1729
BfaI CTAG 7 cut(s) 311, 678, 714, 864, 1115, 1229, 1918
BfmI CTRYAG 1 cut(s) 303
BfoI RGCGCY 2 cut(s) 540, 1387
BfrI CTTAAG 1 cut(s) 1406
BfuAI ACCTGC 2 cut(s) 35, 1899
BglI GCCNNNNNGGC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 1576
Bme1390I CCNGG 3 cut(s) 164, 417, 481
Bme18I GGWCC 1 cut(s) 1374
BmeRI GACNNNNNGTC 1 cut(s) 1372
BmgT120I GGNCC 2 cut(s) 168, 1374
BmiI GGNNCC 5 cut(s) 169, 599, 751, 1758, 1889
BmrFI CCNGG 3 cut(s) 164, 417, 481
BmsI GCATC 1 cut(s) 1410
BpiI GAAGAC 1 cut(s) 1283
BpmI CTGGAG 1 cut(s) 1808
Bpu10I CCTNAGC 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 983
Bsa29I ATCGAT 1 cut(s) 1831
BsaI GGTCTC 1 cut(s) 1729
BsaJI CCNNGG 4 cut(s) 162, 163, 425, 456
BsaWI WCCGGW 1 cut(s) 665
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 533, 672, 1734
Bse1I ACTGG 1 cut(s) 1475
Bse3DI GCAATG 2 cut(s) 174, 186
BseBI CCWGG 3 cut(s) 164, 417, 481
BseCI ATCGAT 1 cut(s) 1831
BseDI CCNNGG 4 cut(s) 162, 163, 425, 456
BseGI GGATG 6 cut(s) 246, 569, 705, 814, 1251, 1441
BseLI CCNNNNNNNGG 4 cut(s) 166, 533, 672, 1734
BseMI GCAATG 2 cut(s) 174, 186
BseMII CTCAG 4 cut(s) 482, 583, 904, 1796
BseNI ACTGG 1 cut(s) 1475
BseRI GAGGAG 2 cut(s) 878, 1845
BseXI GCAGC 8 cut(s) 60, 317, 526, 895, 938, 1098, 1160, 1603
BshFI GGCC 2 cut(s) 170, 424
BshNI GGYRCC 1 cut(s) 1887
BshVI ATCGAT 1 cut(s) 1831
BsiSI CCGG 1 cut(s) 666
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 166, 533, 672, 1734
BsmAI GTCTC 3 cut(s) 119, 776, 1729
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 2 cut(s) 170, 424
Bso31I GGTCTC 1 cut(s) 1729
Bsp1286I GDGCHC 2 cut(s) 969, 1819
Bsp143I GATC 4 cut(s) 320, 523, 1284, 1525
Bsp19I CCATGG 1 cut(s) 425
BspACI CCGC 4 cut(s) 225, 1754, 1825, 1894
BspANI GGCC 2 cut(s) 170, 424
BspCNI CTCAG 4 cut(s) 481, 582, 903, 1795
BspDI ATCGAT 1 cut(s) 1831
BspLI GGNNCC 5 cut(s) 169, 599, 751, 1758, 1889
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 2 cut(s) 35, 1899
BspPI GGATC 1 cut(s) 518
BspQI GCTCTTC 1 cut(s) 1541
BspT107I GGYRCC 1 cut(s) 1887
BspTI CTTAAG 1 cut(s) 1406
BspTNI GGTCTC 1 cut(s) 1729
BsrDI GCAATG 2 cut(s) 174, 186
BsrI ACTGG 1 cut(s) 1475
BssECI CCNNGG 4 cut(s) 162, 163, 425, 456
BssMI GATC 4 cut(s) 320, 523, 1284, 1525
BssT1I CCWWGG 2 cut(s) 425, 456
Bst2UI CCWGG 3 cut(s) 164, 417, 481
Bst4CI ACNGT 8 cut(s) 101, 385, 597, 851, 1160, 1176, 1282, 1496
Bst6I CTCTTC 2 cut(s) 1191, 1541
BstAFI CTTAAG 1 cut(s) 1406
BstAPI GCANNNNNTGC 1 cut(s) 900
BstC8I GCNNGC 1 cut(s) 794
BstDEI CTNAG 6 cut(s) 84, 468, 569, 890, 1028, 1782
BstDSI CCRYGG 1 cut(s) 425
BstF5I GGATG 6 cut(s) 246, 569, 705, 814, 1251, 1441
BstH2I RGCGCY 2 cut(s) 540, 1387
BstHHI GCGC 2 cut(s) 539, 1386
BstKTI GATC 4 cut(s) 323, 526, 1287, 1528
BstMAI GTCTC 3 cut(s) 119, 776, 1729
BstMBI GATC 4 cut(s) 320, 523, 1284, 1525
BstMWI GCNNNNNNNGC 6 cut(s) 176, 421, 683, 900, 1077, 1392
BstNI CCWGG 3 cut(s) 164, 417, 481
BstNSI RCATGY 1 cut(s) 1630
BstSCI CCNGG 3 cut(s) 162, 415, 479
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 8 cut(s) 60, 317, 526, 895, 938, 1098, 1160, 1603
BstV2I GAAGAC 1 cut(s) 1283
BstXI CCANNNNNNTGG 1 cut(s) 1883
Bsu15I ATCGAT 1 cut(s) 1831
BsuRI GGCC 2 cut(s) 170, 424
BsuTUI ATCGAT 1 cut(s) 1831
BtgI CCRYGG 1 cut(s) 425
BtsCI GGATG 6 cut(s) 246, 569, 705, 814, 1251, 1441
BtsIMutI CAGTG 4 cut(s) 106, 381, 1156, 1287
BveI ACCTGC 2 cut(s) 35, 1899
Cac8I GCNNGC 1 cut(s) 794
CfoI GCGC 2 cut(s) 539, 1386
Cfr13I GGNCC 2 cut(s) 168, 1374
ClaI ATCGAT 1 cut(s) 1831
Csp6I GTAC 7 cut(s) 138, 736, 743, 1059, 1415, 1575, 1888
CviAII CATG 8 cut(s) 207, 359, 426, 789, 1331, 1396, 1627, 1699
CviQI GTAC 7 cut(s) 138, 736, 743, 1059, 1415, 1575, 1888
DdeI CTNAG 6 cut(s) 84, 468, 569, 890, 1028, 1782
DpnI GATC 4 cut(s) 322, 525, 1286, 1527
DpnII GATC 4 cut(s) 320, 523, 1284, 1525
DraI TTTAAA 1 cut(s) 592
DriI GACNNNNNGTC 1 cut(s) 1372
EaeI YGGCCR 1 cut(s) 422
Eam1104I CTCTTC 2 cut(s) 1191, 1541
Eam1105I GACNNNNNGTC 1 cut(s) 1372
EarI CTCTTC 2 cut(s) 1191, 1541
Eco130I CCWWGG 2 cut(s) 425, 456
Eco24I GRGCYC 2 cut(s) 969, 1819
Eco31I GGTCTC 1 cut(s) 1729
Eco32I GATATC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 1374
Eco57I CTGAAG 1 cut(s) 1382
EcoO109I RGGNCCY 1 cut(s) 168
EcoRII CCWGG 3 cut(s) 162, 415, 479
EcoRV GATATC 1 cut(s) 399
EcoT14I CCWWGG 2 cut(s) 425, 456
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 2 cut(s) 969, 1819
ErhI CCWWGG 2 cut(s) 425, 456
FaeI CATG 8 cut(s) 210, 362, 429, 792, 1334, 1399, 1630, 1702
FalI AAGNNNNNCTT 2 cut(s) 980, 1012
FaqI GGGAC 1 cut(s) 299
FatI CATG 8 cut(s) 206, 358, 425, 788, 1330, 1395, 1626, 1698
FbaI TGATCA 1 cut(s) 1284
FblI GTMKAC 1 cut(s) 1865
FokI GGATG 6 cut(s) 233, 576, 692, 801, 1258, 1448
FriOI GRGCYC 2 cut(s) 969, 1819
FspBI CTAG 7 cut(s) 311, 678, 714, 864, 1115, 1229, 1918
GlaI GCGC 2 cut(s) 538, 1385
GsuI CTGGAG 1 cut(s) 1808
HaeII RGCGCY 2 cut(s) 540, 1387
HaeIII GGCC 2 cut(s) 170, 424
HapII CCGG 1 cut(s) 666
HhaI GCGC 2 cut(s) 539, 1386
Hin1II CATG 8 cut(s) 210, 362, 429, 792, 1334, 1399, 1630, 1702
Hin6I GCGC 2 cut(s) 537, 1384
HinP1I GCGC 2 cut(s) 537, 1384
HincII GTYRAC 1 cut(s) 840
HindII GTYRAC 1 cut(s) 840
HinfI GANTC 5 cut(s) 88, 633, 945, 1339, 1400
HpaII CCGG 1 cut(s) 666
HphI GGTGA 2 cut(s) 307, 319
Hpy166II GTNNAC 3 cut(s) 138, 840, 1866
Hpy188III TCNNGA 4 cut(s) 14, 1251, 1651, 1760
Hpy8I GTNNAC 3 cut(s) 138, 840, 1866
Hpy99I CGWCG 1 cut(s) 1824
HpyAV CCTTC 8 cut(s) 181, 574, 803, 1357, 1397, 1541, 1642, 1708
HpyCH4III ACNGT 8 cut(s) 101, 385, 597, 851, 1160, 1176, 1282, 1496
HpyCH4IV ACGT 2 cut(s) 1166, 1296
HpyCH4V TGCA 9 cut(s) 76, 179, 305, 349, 686, 911, 926, 1148, 1395
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 421, 683, 900, 1077, 1392
HpyF3I CTNAG 6 cut(s) 84, 468, 569, 890, 1028, 1782
HpySE526I ACGT 2 cut(s) 1166, 1296
Hsp92II CATG 8 cut(s) 210, 362, 429, 792, 1334, 1399, 1630, 1702
HspAI GCGC 2 cut(s) 537, 1384
KpnI GGTACC 1 cut(s) 1891
Ksp22I TGATCA 1 cut(s) 1284
Kzo9I GATC 4 cut(s) 320, 523, 1284, 1525
LguI GCTCTTC 1 cut(s) 1541
LmnI GCTCC 2 cut(s) 749, 1858
Lsp1109I GCAGC 8 cut(s) 60, 317, 526, 895, 938, 1098, 1160, 1603
LweI GCATC 1 cut(s) 1410
MaeI CTAG 7 cut(s) 311, 678, 714, 864, 1115, 1229, 1918
MaeII ACGT 2 cut(s) 1166, 1296
MaeIII GTNAC 3 cut(s) 47, 220, 441
MalI GATC 4 cut(s) 322, 525, 1286, 1527
MboI GATC 4 cut(s) 320, 523, 1284, 1525
MfeI CAATTG 1 cut(s) 1859
MhlI GDGCHC 2 cut(s) 969, 1819
MlsI TGGCCA 1 cut(s) 424
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 2 cut(s) 82, 1394
MmeI TCCRAC 1 cut(s) 1662
Mox20I TGGCCA 1 cut(s) 424
Mph1103I ATGCAT 1 cut(s) 351
MscI TGGCCA 1 cut(s) 424
MslI CAYNNNNRTG 3 cut(s) 179, 332, 386
Msp20I TGGCCA 1 cut(s) 424
MspA1I CMGCKG 1 cut(s) 1786
MspCI CTTAAG 1 cut(s) 1406
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 3 cut(s) 164, 417, 481
MunI CAATTG 1 cut(s) 1859
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 3 cut(s) 164, 417, 481
MwoI GCNNNNNNNGC 6 cut(s) 176, 421, 683, 900, 1077, 1392
NcoI CCATGG 1 cut(s) 425
NdeII GATC 4 cut(s) 320, 523, 1284, 1525
NlaIII CATG 8 cut(s) 210, 362, 429, 792, 1334, 1399, 1630, 1702
NlaIV GGNNCC 5 cut(s) 169, 599, 751, 1758, 1889
NmeAIII GCCGAG 1 cut(s) 884
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 1630
OliI CACNNNNGTG 1 cut(s) 386
PasI CCCWGGG 1 cut(s) 163
PciI ACATGT 1 cut(s) 1626
PciSI GCTCTTC 1 cut(s) 1541
PcsI WCGNNNNNNNCGW 1 cut(s) 1828
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 3 cut(s) 633, 945, 1339
PflMI CCANNNNNTGG 1 cut(s) 1734
PleI GAGTC 2 cut(s) 82, 1394
PpsI GAGTC 2 cut(s) 82, 1394
PscI ACATGT 1 cut(s) 1626
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 162, 415, 479
PspGI CCWGG 3 cut(s) 162, 415, 479
PspN4I GGNNCC 5 cut(s) 169, 599, 751, 1758, 1889
PspPI GGNCC 2 cut(s) 168, 1374
PsrI GAACNNNNNNTAC 2 cut(s) 1567, 1599
PstI CTGCAG 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 1786
RsaI GTAC 7 cut(s) 139, 737, 744, 1060, 1416, 1576, 1889
RsaNI GTAC 7 cut(s) 138, 736, 743, 1059, 1415, 1575, 1888
RseI CAYNNNNRTG 3 cut(s) 179, 332, 386
SapI GCTCTTC 1 cut(s) 1541
Sau3AI GATC 4 cut(s) 320, 523, 1284, 1525
Sau96I GGNCC 2 cut(s) 168, 1374
ScaI AGTACT 1 cut(s) 1576
SchI GAGTC 2 cut(s) 82, 1394
ScrFI CCNGG 3 cut(s) 164, 417, 481
SduI GDGCHC 2 cut(s) 969, 1819
SfaNI GCATC 1 cut(s) 1410
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 1 cut(s) 1374
SmiMI CAYNNNNRTG 3 cut(s) 179, 332, 386
SmlI CTYRAG 2 cut(s) 962, 1406
SmoI CTYRAG 2 cut(s) 962, 1406
SsiI CCGC 4 cut(s) 225, 1754, 1825, 1894
SspI AATATT 3 cut(s) 117, 694, 823
SspMI CTAG 7 cut(s) 311, 678, 714, 864, 1115, 1229, 1918
StyD4I CCNGG 3 cut(s) 162, 415, 479
StyI CCWWGG 2 cut(s) 425, 456
TaaI ACNGT 8 cut(s) 101, 385, 597, 851, 1160, 1176, 1282, 1496
TaiI ACGT 2 cut(s) 1169, 1299
TaqI TCGA 5 cut(s) 1290, 1426, 1507, 1652, 1831
TatI WGTACW 1 cut(s) 1574
TauI GCSGC 2 cut(s) 1827, 1897
TfiI GAWTC 3 cut(s) 633, 945, 1339
TscAI CASTG 4 cut(s) 106, 388, 1163, 1287
TseI GCWGC 8 cut(s) 73, 305, 539, 908, 926, 1111, 1148, 1616
TspRI CASTG 4 cut(s) 106, 388, 1163, 1287
Van91I CCANNNNNTGG 1 cut(s) 1734
Vha464I CTTAAG 1 cut(s) 1406
VpaK11BI GGWCC 1 cut(s) 1374
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 5 cut(s) 149, 363, 1045, 1602, 1730
XceI RCATGY 1 cut(s) 1630
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 1865
XspI CTAG 7 cut(s) 311, 678, 714, 864, 1115, 1229, 1918
ZrmI AGTACT 1 cut(s) 1576
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.