MD07G1291200.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000119
Physical Location & Seq
Reverse (-)
35189572 .. 35192914
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1291200.v1.1.491

Sequence Viewer

Length: 1827 bp
ATGTCCATTCCATTAAGCCTTACATCTCACGATGCCAACATACCAAACCAGCAACCTGGAGGAGCTTCACCAAGTGAAAAATTTAAGTGCCTAAAATTGGATCGACTTCTTGCAAATAATCCACTGTGGAACAAAATATTTATAATTTCATGTGTGATTGCTGTGTCACTGGACCCTTTGTTCTTTTACATTCCAATCATCGATCAAGACAACAAGTGCCTTGGAATGGACAAAAAGCTGAAGAATGTAACTCTTGTTTTGCGACTGCTCGCAGATCTCATTTTCGTAGTGCATATTATTCATCAAATTTGTAAGGCCATTAAATCTGTCAACCCAAAAGAAAAGGAAAATTCCGGTTGGGAATCGAAAGCTATGGCAGTAGCCAGGAAGTTGTCGTGGCGCTCGATGGTTACTGATATTCTTGCTGTTCTTCCCATCCCACAAGTGCTTTTAGTAGTTGTTTTCTTCAAAATGAGAGGCTCTGGATATTTGCAGAAAAGAAAGGTTCTAAACTTTTTTCTTCTTGCCCAATATCTTCCAAGGATTTATCGAATTCACCTATCCTCTAACAACCTTTCACAAACTGGAATATGGGTCAAAGGTGCATTCAATTTTTTCCTTTACATCCTTGCAAGTCATGTACTTGGAGCTTTTTGGTATTTTTTTTCTATTCAACGAGAGACATCATGTTGGCATCAAGCATGCATGAAACAGAGCATTAGTGGTGTGATTACTTTTTACTGTGACAATCTCGGTACTACCCCAAGAGATAGAGATATTACATTATTTCAAGATGAATGTCCCATAAATGTTCCTGCAAATACTACACCGCCTTTTGATTTCGGAATATTTCTTGATTCCCTTAAATCAAACACCACGCCGTTGGATTTTTCGAGCAAACTCTTCTACTCGTTTTGGTGGGGACTGAGAAATTTAAGCAACTTTGGCACAAATCTGACAACAAGTACATATGTGTGGGAAAACTTGTTTGCAATTCTTATTTCTATCATTGGATTACTCCTATTTTTATATCTCTTAGGGAATGTACAGACGTTTATGCAATTGGCAACTATAAAGTCGGAGGAGATAAGACGGAAGATGAAAGATCGAAAAATAGAAGAGTGGATGGATAAAAATGCTATCCCAGGACATTTGAAACAAAAGATCAAGAAAAACATAAAACAAAAACTGAAAGAAAACAAAGATGCTGATCTGGAGAATCTGATCTCCATTCTTCCTTGGTACACCATGAAACCCCTAAAGCGTTTGCTCTGCATGAATACCCTAAGGACAGTACCAATGCTCAAAGAAACGGATGGAAAAGTGTTGAAAATGATCTGCGATTATCTGAGGCCAATGATTTACAGCGAGAATAGCATCGTTGTTCAAAGAGGAGATCCTCTCGATCGGATTATCTTCATTACGGAAGGGTTTATAGAGACTTATGTGGGCGGTGAACAGAGTCGACACCGTGCTGGATCATCGTCGGGTTCCCAATCCTCGTCAATGCCAACCAAAACGCTTAAAAAAGGCGAGTTCTACGGCGAAGAGCTTCTCAACTGGGCATCTCGGTCGCAACGTCCTATCTCCACCCAAACAGTTAAATGCCATACAAAAGTCGAAGCTTTTGTTCTTATGGCCAATGACTTGCCAAGTATAGTCTCCAAATGCGGATCGTTGTGGCCAAACATAAATCACAGCAACAACAACAATAACAATAATATTAACGTTACTCATCCTGAACAGCCCTTACTAAGTGGCGTCGAGAGCTCTACAGGCTCGACGCCAAGAATCCGGTATCTCAAACCTGCTGTACGCCCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

609

Amino Acids

69.32

Weight (kDa)

9.5

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 41 - 356 5e-09 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 1816
AccI GTMKAC 1 cut(s) 1465
AciI CCGC 3 cut(s) 830, 1452, 1671
AclI AACGTT 1 cut(s) 1728
AclWI GGATC 4 cut(s) 108, 1391, 1486, 1681
AcoI YGGCCR 2 cut(s) 1638, 1682
AcsI RAATTY 5 cut(s) 80, 306, 349, 552, 931
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 2 cut(s) 1761, 1784
AdeI CACNNNGTG 1 cut(s) 74
AfaI GTAC 7 cut(s) 642, 757, 967, 1047, 1244, 1296, 1815
AfiI CCNNNNNNNGG 2 cut(s) 97, 226
AgsI TTSAA 7 cut(s) 469, 610, 674, 791, 1156, 1330, 1388
AjnI CCWGG 3 cut(s) 55, 383, 1144
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 7 cut(s) 65, 238, 371, 650, 1552, 1625, 1770
AluI AGCT 7 cut(s) 65, 238, 371, 650, 1552, 1625, 1770
Alw21I GWGCWC 1 cut(s) 1772
Alw26I GTCTC 3 cut(s) 674, 1433, 1666
AlwI GGATC 4 cut(s) 108, 1391, 1486, 1681
AoxI GGCC 4 cut(s) 315, 1352, 1638, 1682
ApoI RAATTY 5 cut(s) 80, 306, 349, 552, 931
Asp700I GAANNNNTTC 1 cut(s) 1551
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 3 cut(s) 60, 548, 1466
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 1286
BalI TGGCCA 2 cut(s) 1640, 1684
BanII GRGCYC 1 cut(s) 1772
Bbv12I GWGCWC 1 cut(s) 1772
BccI CCATC 4 cut(s) 400, 443, 1120, 1310
BceAI ACGGC 2 cut(s) 865, 1558
BcgI CGANNNNNNTGC 2 cut(s) 1554, 1588
BciT130I CCWGG 3 cut(s) 57, 385, 1146
BcoDI GTCTC 3 cut(s) 674, 1433, 1666
BfmI CTRYAG 1 cut(s) 1773
BfoI RGCGCY 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 1816
BglII AGATCT 1 cut(s) 274
Bme1390I CCNGG 3 cut(s) 57, 385, 1146
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 174, 1492
BmrFI CCNGG 3 cut(s) 57, 385, 1146
BmrI ACTGGG 1 cut(s) 1570
BmsI GCATC 5 cut(s) 22, 703, 1195, 1386, 1574
BmuI ACTGGG 1 cut(s) 1570
BplI GAGNNNNNCTC 2 cut(s) 1386, 1418
BpmI CTGGAG 2 cut(s) 78, 1235
Bsa29I ATCGAT 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 1209
BsaHI GRCGYC 2 cut(s) 1761, 1784
BsaJI CCNNGG 4 cut(s) 220, 539, 1144, 1238
BsaWI WCCGGW 2 cut(s) 353, 1794
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 226
Bse1I ACTGG 3 cut(s) 174, 589, 1565
Bse21I CCTNAGG 1 cut(s) 1286
Bse8I GATNNNNATC 1 cut(s) 1209
BseBI CCWGG 3 cut(s) 57, 385, 1146
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 220, 539, 1144, 1238
BseGI GGATG 5 cut(s) 435, 624, 1131, 1321, 1735
BseJI GATNNNNATC 1 cut(s) 1209
BseLI CCNNNNNNNGG 2 cut(s) 97, 226
BseMII CTCAG 2 cut(s) 917, 1340
BseNI ACTGG 3 cut(s) 174, 589, 1565
BseRI GAGGAG 3 cut(s) 75, 1097, 1407
Bsh1285I CGRYCG 2 cut(s) 1408, 1574
BshFI GGCC 4 cut(s) 317, 1354, 1640, 1684
BshVI ATCGAT 1 cut(s) 201
BsiEI CGRYCG 2 cut(s) 1408, 1574
BsiHKAI GWGCWC 1 cut(s) 1772
BsiSI CCGG 2 cut(s) 354, 1795
BslFI GGGAC 2 cut(s) 786, 936
BslI CCNNNNNNNGG 2 cut(s) 97, 226
BsmAI GTCTC 3 cut(s) 674, 1433, 1666
BsmFI GGGAC 2 cut(s) 786, 936
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 4 cut(s) 317, 1354, 1640, 1684
Bsp1286I GDGCHC 1 cut(s) 1772
Bsp1407I TGTACA 1 cut(s) 1045
BspACI CCGC 3 cut(s) 830, 1452, 1671
BspANI GGCC 4 cut(s) 317, 1354, 1640, 1684
BspCNI CTCAG 2 cut(s) 918, 1341
BspDI ATCGAT 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 174, 1492
BspMI ACCTGC 1 cut(s) 1816
BspPI GGATC 4 cut(s) 108, 1391, 1486, 1681
BspQI GCTCTTC 1 cut(s) 1542
BsrGI TGTACA 1 cut(s) 1045
BsrI ACTGG 3 cut(s) 174, 589, 1565
BssECI CCNNGG 4 cut(s) 220, 539, 1144, 1238
BssNI GRCGYC 2 cut(s) 1761, 1784
BssT1I CCWWGG 3 cut(s) 220, 539, 1238
Bst2UI CCWGG 3 cut(s) 57, 385, 1146
Bst4CI ACNGT 5 cut(s) 126, 743, 1294, 1472, 1600
Bst6I CTCTTC 3 cut(s) 908, 1113, 1542
BstACI GRCGYC 2 cut(s) 1761, 1784
BstAUI TGTACA 1 cut(s) 1045
BstC8I GCNNGC 2 cut(s) 270, 703
BstDEI CTNAG 5 cut(s) 926, 1036, 1286, 1349, 1754
BstF5I GGATG 5 cut(s) 435, 624, 1131, 1321, 1735
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 1 cut(s) 402
BstMAI GTCTC 3 cut(s) 674, 1433, 1666
BstMCI CGRYCG 2 cut(s) 1408, 1574
BstMWI GCNNNNNNNGC 4 cut(s) 945, 1374, 1767, 1776
BstNI CCWGG 3 cut(s) 57, 385, 1146
BstNSI RCATGY 1 cut(s) 705
BstSCI CCNGG 3 cut(s) 55, 383, 1144
BstSFI CTRYAG 1 cut(s) 1773
BstX2I RGATCY 2 cut(s) 274, 1396
BstXI CCANNNNNNTGG 2 cut(s) 56, 883
BstYI RGATCY 2 cut(s) 274, 1396
Bsu15I ATCGAT 1 cut(s) 201
Bsu36I CCTNAGG 1 cut(s) 1286
BsuRI GGCC 4 cut(s) 317, 1354, 1640, 1684
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 5 cut(s) 435, 624, 1131, 1321, 1735
BtsIMutI CAGTG 2 cut(s) 122, 167
BveI ACCTGC 1 cut(s) 1816
Cac8I GCNNGC 2 cut(s) 270, 703
CfoI GCGC 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 172
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 2 cut(s) 1750, 1792
Csp6I GTAC 7 cut(s) 641, 756, 966, 1046, 1243, 1295, 1814
CviAII CATG 7 cut(s) 150, 638, 687, 702, 706, 1249, 1276
CviQI GTAC 7 cut(s) 641, 756, 966, 1046, 1243, 1295, 1814
DdeI CTNAG 5 cut(s) 926, 1036, 1286, 1349, 1754
DraIII CACNNNGTG 1 cut(s) 74
EaeI YGGCCR 2 cut(s) 1638, 1682
Eam1104I CTCTTC 3 cut(s) 908, 1113, 1542
EarI CTCTTC 3 cut(s) 908, 1113, 1542
Ecl136II GAGCTC 1 cut(s) 1770
Eco130I CCWWGG 3 cut(s) 220, 539, 1238
Eco24I GRGCYC 1 cut(s) 1772
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 1770
Eco57I CTGAAG 1 cut(s) 260
Eco81I CCTNAGG 1 cut(s) 1286
EcoICRI GAGCTC 1 cut(s) 1770
EcoRI GAATTC 1 cut(s) 552
EcoRII CCWGG 3 cut(s) 55, 383, 1144
EcoT14I CCWWGG 3 cut(s) 220, 539, 1238
EcoT22I ATGCAT 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 1772
ErhI CCWWGG 3 cut(s) 220, 539, 1238
FaeI CATG 7 cut(s) 153, 641, 690, 705, 709, 1252, 1279
FaqI GGGAC 2 cut(s) 786, 936
FatI CATG 7 cut(s) 149, 637, 686, 701, 705, 1248, 1275
FauNDI CATATG 1 cut(s) 970
FblI GTMKAC 1 cut(s) 1465
FokI GGATG 5 cut(s) 422, 611, 1138, 1328, 1722
FriOI GRGCYC 1 cut(s) 1772
GlaI GCGC 1 cut(s) 401
GsuI CTGGAG 2 cut(s) 78, 1235
HaeII RGCGCY 1 cut(s) 403
HaeIII GGCC 4 cut(s) 317, 1354, 1640, 1684
HapII CCGG 2 cut(s) 354, 1795
HgaI GACGC 2 cut(s) 1750, 1792
HhaI GCGC 1 cut(s) 402
Hin1I GRCGYC 2 cut(s) 1761, 1784
Hin1II CATG 7 cut(s) 153, 641, 690, 705, 709, 1252, 1279
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HincII GTYRAC 2 cut(s) 331, 1466
HindII GTYRAC 2 cut(s) 331, 1466
HindIII AAGCTT 1 cut(s) 1623
HinfI GANTC 5 cut(s) 362, 857, 1219, 1462, 1791
HpaII CCGG 2 cut(s) 354, 1795
HphI GGTGA 3 cut(s) 60, 548, 1466
Hpy166II GTNNAC 4 cut(s) 331, 1245, 1457, 1466
Hpy188I TCNGA 6 cut(s) 845, 957, 1081, 1224, 1350, 1410
Hpy8I GTNNAC 4 cut(s) 331, 1245, 1457, 1466
Hpy99I CGWCG 3 cut(s) 1489, 1766, 1786
HpyAV CCTTC 1 cut(s) 1421
HpyCH4III ACNGT 5 cut(s) 126, 743, 1294, 1472, 1600
HpyCH4IV ACGT 3 cut(s) 1052, 1579, 1728
HpyF10VI GCNNNNNNNGC 4 cut(s) 945, 1374, 1767, 1776
HpyF3I CTNAG 5 cut(s) 926, 1036, 1286, 1349, 1754
HpySE526I ACGT 3 cut(s) 1052, 1579, 1728
Hsp92I GRCGYC 2 cut(s) 1761, 1784
Hsp92II CATG 7 cut(s) 153, 641, 690, 705, 709, 1252, 1279
HspAI GCGC 1 cut(s) 400
LguI GCTCTTC 1 cut(s) 1542
LmnI GCTCC 2 cut(s) 62, 647
LweI GCATC 5 cut(s) 22, 703, 1195, 1386, 1574
MaeII ACGT 3 cut(s) 1052, 1579, 1728
MaeIII GTNAC 5 cut(s) 165, 247, 409, 743, 1729
MfeI CAATTG 1 cut(s) 1061
MflI RGATCY 2 cut(s) 274, 1396
MhlI GDGCHC 1 cut(s) 1772
MlsI TGGCCA 2 cut(s) 1640, 1684
MluNI TGGCCA 2 cut(s) 1640, 1684
MlyI GAGTC 1 cut(s) 1471
MmeI TCCRAC 2 cut(s) 864, 1059
MnlI CCTC 8 cut(s) 53, 470, 574, 1075, 1344, 1385, 1410, 1510
Mox20I TGGCCA 2 cut(s) 1640, 1684
Mph1103I ATGCAT 1 cut(s) 707
MroXI GAANNNNTTC 1 cut(s) 1551
MscI TGGCCA 2 cut(s) 1640, 1684
MseI TTAA 8 cut(s) 14, 84, 321, 864, 935, 1524, 1602, 1725
MslI CAYNNNNRTG 1 cut(s) 973
Msp20I TGGCCA 2 cut(s) 1640, 1684
MspI CCGG 2 cut(s) 354, 1795
MspR9I CCNGG 3 cut(s) 57, 385, 1146
MunI CAATTG 1 cut(s) 1061
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 3 cut(s) 57, 385, 1146
MwoI GCNNNNNNNGC 4 cut(s) 945, 1374, 1767, 1776
NdeI CATATG 1 cut(s) 970
NlaIII CATG 7 cut(s) 153, 641, 690, 705, 709, 1252, 1279
NlaIV GGNNCC 2 cut(s) 174, 1492
NmuCI GTSAC 2 cut(s) 165, 743
NsiI ATGCAT 1 cut(s) 707
NspI RCATGY 1 cut(s) 705
PaeI GCATGC 1 cut(s) 705
PciSI GCTCTTC 1 cut(s) 1542
PcsI WCGNNNNNNNCGW 2 cut(s) 401, 1576
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 1551
PfeI GAWTC 4 cut(s) 362, 857, 1219, 1791
Ple19I CGATCG 1 cut(s) 1408
PleI GAGTC 1 cut(s) 1470
PpsI GAGTC 1 cut(s) 1470
PsiI TTATAA 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 1772
Psp1406I AACGTT 1 cut(s) 1728
Psp6I CCWGG 3 cut(s) 55, 383, 1144
PspGI CCWGG 3 cut(s) 55, 383, 1144
PspN4I GGNNCC 2 cut(s) 174, 1492
PspPI GGNCC 1 cut(s) 172
PsrI GAACNNNNNNTAC 2 cut(s) 1734, 1766
PsuI RGATCY 2 cut(s) 274, 1396
PvuI CGATCG 1 cut(s) 1408
RsaI GTAC 7 cut(s) 642, 757, 967, 1047, 1244, 1296, 1815
RsaNI GTAC 7 cut(s) 641, 756, 966, 1046, 1243, 1295, 1814
RseI CAYNNNNRTG 1 cut(s) 973
SacI GAGCTC 1 cut(s) 1772
SalI GTCGAC 1 cut(s) 1464
SapI GCTCTTC 1 cut(s) 1542
SaqAI TTAA 8 cut(s) 14, 84, 321, 864, 935, 1524, 1602, 1725
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 1 cut(s) 1471
ScrFI CCNGG 3 cut(s) 57, 385, 1146
SduI GDGCHC 1 cut(s) 1772
SfaNI GCATC 5 cut(s) 22, 703, 1195, 1386, 1574
SfcI CTRYAG 1 cut(s) 1773
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 973
SphI GCATGC 1 cut(s) 705
SsiI CCGC 3 cut(s) 830, 1452, 1671
SspI AATATT 3 cut(s) 138, 849, 1723
SstI GAGCTC 1 cut(s) 1772
StyD4I CCNGG 3 cut(s) 55, 383, 1144
StyI CCWWGG 3 cut(s) 220, 539, 1238
TaaI ACNGT 5 cut(s) 126, 743, 1294, 1472, 1600
TaiI ACGT 3 cut(s) 1055, 1582, 1731
TaqII GACCGA 1 cut(s) 1560
TatI WGTACW 3 cut(s) 640, 965, 1045
TfiI GAWTC 4 cut(s) 362, 857, 1219, 1791
Tru1I TTAA 8 cut(s) 14, 84, 321, 864, 935, 1524, 1602, 1725
Tru9I TTAA 8 cut(s) 14, 84, 321, 864, 935, 1524, 1602, 1725
TscAI CASTG 2 cut(s) 129, 174
TseFI GTSAC 2 cut(s) 165, 743
Tsp45I GTSAC 2 cut(s) 165, 743
TspDTI ATGAA 8 cut(s) 138, 290, 722, 810, 1115, 1265, 1292, 1408
TspGWI ACGGA 3 cut(s) 1108, 1328, 1439
TspRI CASTG 2 cut(s) 129, 174
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 5 cut(s) 80, 306, 349, 552, 931
XceI RCATGY 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 1465
XmnI GAANNNNTTC 1 cut(s) 1551
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.