Rmu_sc0002183.1_g000030

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002183.1
OG0000119
Physical Location & Seq
Forward (+)
122144 .. 129023
6880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002183.1_g000030.1.cds

Sequence Viewer

Length: 2598 bp
atgtcaaagacgctgcacccaacaaagacatcacatatctgctcggccttgacggcaagggcatgcacctgttttccgaccaccggtatacgaagaaaaccagaggccttgaaggcgcagggtaaccccaaaggcgaggatccgacttcaaacctggttgaggtggtggagggctcggagaacccgaagggggtcggcgccggagctggagaatccagcgaagaaggctcggcggtcggcttcgcggatgttgaatgcggagtggagatcggaggattaggaagaagagctaccagtactacgagttgtctagttgaacatcctcttctgaagacggccattcagaaaattgcgggactacgaagactttgcttggctctgttaggaccatacgatgagagcatcatcgaaatgagccttacaccaggtataggttatgatttcaacagtcctgaggctctattgcagcatccagtacggacccctcaacctggagaacctcaagcaagcaacaaatggaagaggccaacagttgcggaaattctttcagttatgaacccatggtggaatacgattcttgtaacttcatgtgtgattgcagttttatttgatcctttgttcttttacattccatacatcaaagaggaagaaaagtgcatgggaatcgataaacaagtgcggactgcagctctggtttttcgatcagtcacggacatcactttcctagtgcatatcatataccaactccgtgaagctatcaaatctgcagcctcaaagattccaagggataacaattcggattgggaatgggaatcggtaacccgagttcagatgattcagtttgcaaaagaattttctcgcaaattgtcatggcgctctttcctaactgacgtttttgctattttccctatgccacaactgctaatagtagggttgtttttcgaaatggaaggccgtaactatttactgagaagaaagattctgagcggttttcttctagtccaatatgtgccaagaatttatcgaatttatctatcgtctaccgtagttacacagtccgcattatggattaaaggtgcattcaattttttcctctacgttcttgccagtcatgtactgggagccttttggtattttttttctattcagcgagagatatcatgctggtatcgaacttgcattgatacaaaacaagcagaatcagaatgcactttttactgccatgacaagactgcaattattaccaaagaattcaatagaactctaggagatctttgccttgtaaaagttccatataatatgactgatccaccatttgattttggaatattttttgatgccctcaaaaatgatatccaggggccaataaactttccaacaaagattggttactgtttttggtggggcttgcgaaatttaagttcttttggcacaagtttggaaacaagtacctatctgtgggaaaacagctttgcaattcttatttctatcatcggcttgctattatttctatatctcattggaaatgttcagatatatatggagagggcaactaccagggtggaggaggtaagagagaagattctgataaaaaagaacgatatagaaaagtggatggaaaaaaatggtctccaagatgacatgaagaaagagatcatgaaaaacatcaagcaaaaattggaagaggacataaatgcagatctggaggatctagtctctattcttccctggtataccaagaaagctctaaagcgcgttctctgcatgagtgcgctaagaaaagtaccaatgcttagccagatggatgaaaaagttttgaaaatgatgtgcgactatctgaagcccgtgaattaccctgagaataccctggtttttcagatgggagaaccacttgatcgaatggtcttcattacagaagggtttatgtggacttacacgactcctactgagagtagtcattttggaaaagcagcaggactggctacttctccatccatggacaccaacttcctcaagaagggtgattcttatggacacgctcttctgcagtttgcatcatcatctcttgtggcactccctacctcagctgcaaatgtccggtgtcacacaaaggtagaggcgttcgttctcatggccaaggacctgaaaaacatagtaactaaatgcgaaaatttttggcctttcgactacaatgcttctaaagatgaggcggtgaatcaggtcacacccctgggccagtttcagcaacaacaaatgccaaagaagcgtcacccgcgccccaacattcatccgcagctgttcctctccttccctgcccagaccggcctccgcctctccggccgaacaccacaagccaccaccggcctccatcgaattactaagggcacccagacgcccatgcgtccacccacctgcagtgcccccgcgctagcagcacgatcgagccttcgatccagcctccgcgtgcacagcccagcctccgacgcttgtagcagcgcctccgacccggtcctgcatcagcccagccgcgtccggcctctcatccccgcaacccagctacgcccggccccgccctcgcccacctgcagatcctcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

865

Amino Acids

97.4

Weight (kDa)

8.9

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 2420, 2591
Acc36I ACCTGC 2 cut(s) 2420, 2591
AccB1I GGYRCC 2 cut(s) 197, 2384
AccBSI CCGCTC 1 cut(s) 987
AccI GTMKAC 3 cut(s) 88, 1040, 1733
AccII CGCG 6 cut(s) 245, 1755, 2275, 2426, 2463, 2529
AclWI GGATC 7 cut(s) 134, 147, 605, 1301, 1716, 2445, 2583
AcoI YGGCCR 3 cut(s) 336, 2133, 2338
AcsI RAATTY 7 cut(s) 540, 851, 1017, 1026, 1250, 1414, 2170
AcuI CTGAAG 2 cut(s) 350, 1859
AcyI GRCGYC 2 cut(s) 198, 2393
AfaI GTAC 5 cut(s) 298, 477, 1116, 1450, 1785
AfiI CCNNNNNNNGG 8 cut(s) 83, 160, 190, 431, 491, 1065, 1458, 2017
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 8 cut(s) 112, 150, 254, 317, 445, 1084, 1255, 1819
AjnI CCWGG 8 cut(s) 153, 424, 490, 1356, 1556, 1727, 1866, 2229
AluBI AGCT 9 cut(s) 206, 290, 689, 755, 1470, 1745, 2087, 2296, 2557
AluI AGCT 9 cut(s) 206, 290, 689, 755, 1470, 1745, 2087, 2296, 2557
Alw21I GWGCWC 1 cut(s) 2469
Alw26I GTCTC 2 cut(s) 1634, 1720
Alw44I GTGCAC 1 cut(s) 2465
AlwI GGATC 7 cut(s) 134, 147, 605, 1301, 1716, 2445, 2583
Ama87I CYCGRG 1 cut(s) 822
ApaLI GTGCAC 1 cut(s) 2465
ApeKI GCWGC 9 cut(s) 13, 466, 686, 767, 1970, 2087, 2293, 2432, 2493
ApoI RAATTY 7 cut(s) 540, 851, 1017, 1026, 1250, 1414, 2170
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 8 cut(s) 118, 200, 876, 1755, 1774, 2277, 2428, 2498
AspS9I GGNCC 7 cut(s) 386, 480, 1361, 2140, 2233, 2509, 2566
AsuC2I CCSGG 2 cut(s) 2507, 2564
AsuHPI GGTGA 3 cut(s) 2033, 2224, 2261
AsuII TTCGAA 1 cut(s) 942
AsuNHI GCTAGC 1 cut(s) 2428
AvaI CYCGRG 1 cut(s) 822
AvaII GGWCC 4 cut(s) 386, 480, 2140, 2509
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 3 cut(s) 2387, 2422, 2469
BalI TGGCCA 1 cut(s) 2135
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 197, 2384
BanII GRGCYC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 274, 306
BbsI GAAGAC 3 cut(s) 338, 370, 1897
Bbv12I GWGCWC 1 cut(s) 2469
BbvCI CCTCAGC 1 cut(s) 2083
BbvI GCAGC 8 cut(s) 478, 698, 779, 1982, 2074, 2305, 2444, 2505
BccI CCATC 5 cut(s) 1609, 1795, 1873, 1999, 2376
BceAI ACGGC 3 cut(s) 69, 351, 939
BcgI CGANNNNNNTGC 8 cut(s) 351, 385, 646, 680, 2174, 2208, 2421, 2455
BciT130I CCWGG 8 cut(s) 155, 426, 492, 1358, 1558, 1729, 1868, 2231
BcnI CCSGG 2 cut(s) 2507, 2564
BcoDI GTCTC 2 cut(s) 1634, 1720
BfaI CTAG 6 cut(s) 311, 725, 998, 1265, 1712, 2429
BfmI CTRYAG 5 cut(s) 684, 765, 2045, 2413, 2584
BfoI RGCGCY 3 cut(s) 201, 877, 2499
BfuAI ACCTGC 2 cut(s) 2420, 2591
BglI GCCNNNNNGGC 3 cut(s) 53, 113, 2337
BglII AGATCT 2 cut(s) 1270, 1699
BlpI GCTNAGC 1 cut(s) 1793
BmcAI AGTACT 1 cut(s) 298
Bme18I GGWCC 4 cut(s) 386, 480, 2140, 2509
BmeT110I CYCGRG 1 cut(s) 822
BmgT120I GGNCC 7 cut(s) 386, 480, 1361, 2140, 2233, 2509, 2566
BmiI GGNNCC 7 cut(s) 141, 199, 482, 1123, 1362, 2386, 2568
BmrI ACTGGG 1 cut(s) 1127
BmsI GCATC 5 cut(s) 411, 478, 1327, 2063, 2524
BmtI GCTAGC 1 cut(s) 2432
BmuI ACTGGG 1 cut(s) 1127
BpiI GAAGAC 3 cut(s) 338, 370, 1897
BpmI CTGGAG 3 cut(s) 228, 513, 1724
Bpu10I CCTNAGC 1 cut(s) 2083
Bpu1102I GCTNAGC 1 cut(s) 1793
Bpu14I TTCGAA 1 cut(s) 942
BpuEI CTTGAG 2 cut(s) 486, 1997
BpuMI CCSGG 2 cut(s) 2507, 2564
Bsa29I ATCGAT 1 cut(s) 666
BsaHI GRCGYC 2 cut(s) 198, 2393
BsaI GGTCTC 1 cut(s) 1634
BsaWI WCCGGW 2 cut(s) 83, 2097
Bsc4I CCNNNNNNNGG 8 cut(s) 83, 160, 190, 431, 491, 1065, 1458, 2017
Bse118I RCCGGY 3 cut(s) 83, 2321, 2360
Bse1I ACTGG 6 cut(s) 294, 473, 1107, 1122, 1983, 2236
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 8 cut(s) 155, 426, 492, 1358, 1558, 1729, 1868, 2231
BseCI ATCGAT 1 cut(s) 666
BseGI GGATG 8 cut(s) 253, 319, 469, 1620, 1810, 1991, 2287, 2541
BseLI CCNNNNNNNGG 8 cut(s) 83, 160, 190, 431, 491, 1065, 1458, 2017
BseMII CTCAG 6 cut(s) 444, 959, 974, 1848, 1938, 2097
BseNI ACTGG 6 cut(s) 294, 473, 1107, 1122, 1983, 2236
BseRI GAGGAG 1 cut(s) 1580
BseSI GKGCMC 3 cut(s) 2387, 2422, 2469
BseX3I CGGCCG 1 cut(s) 2338
BseXI GCAGC 8 cut(s) 478, 698, 779, 1982, 2074, 2305, 2444, 2505
BseYI CCCAGC 3 cut(s) 2473, 2522, 2553
Bsh1236I CGCG 6 cut(s) 245, 1755, 2275, 2426, 2463, 2529
Bsh1285I CGRYCG 3 cut(s) 237, 2341, 2441
BshNI GGYRCC 2 cut(s) 197, 2384
BshTI ACCGGT 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 666
BsiEI CGRYCG 3 cut(s) 237, 2341, 2441
BsiHKAI GWGCWC 1 cut(s) 2469
BsiHKCI CYCGRG 1 cut(s) 822
BsiSI CCGG 9 cut(s) 84, 201, 2098, 2322, 2337, 2361, 2507, 2533, 2564
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 8 cut(s) 83, 160, 190, 431, 491, 1065, 1458, 2017
BsmAI GTCTC 2 cut(s) 1634, 1720
BsmFI GGGAC 1 cut(s) 369
BsmI GAATGC 3 cut(s) 260, 1079, 1211
Bso31I GGTCTC 1 cut(s) 1634
BsoBI CYCGRG 1 cut(s) 822
Bsp119I TTCGAA 1 cut(s) 942
Bsp1286I GDGCHC 4 cut(s) 176, 2387, 2422, 2469
Bsp1720I GCTNAGC 1 cut(s) 1793
Bsp19I CCATGG 2 cut(s) 560, 1995
BspCNI CTCAG 6 cut(s) 445, 960, 975, 1849, 1939, 2096
BspDI ATCGAT 1 cut(s) 666
BspFNI CGCG 6 cut(s) 245, 1755, 2275, 2426, 2463, 2529
BspHI TCATGA 1 cut(s) 1656
BspLI GGNNCC 7 cut(s) 141, 199, 482, 1123, 1362, 2386, 2568
BspMAI CTGCAG 5 cut(s) 688, 769, 2049, 2417, 2588
BspMI ACCTGC 2 cut(s) 2420, 2591
BspOI GCTAGC 1 cut(s) 2432
BspPI GGATC 7 cut(s) 134, 147, 605, 1301, 1716, 2445, 2583
BspQI GCTCTTC 2 cut(s) 280, 2046
BspT104I TTCGAA 1 cut(s) 942
BspT107I GGYRCC 2 cut(s) 197, 2384
BspTNI GGTCTC 1 cut(s) 1634
BsrBI CCGCTC 1 cut(s) 987
BsrFI RCCGGY 3 cut(s) 83, 2321, 2360
BsrI ACTGG 6 cut(s) 294, 473, 1107, 1122, 1983, 2236
BssAI RCCGGY 3 cut(s) 83, 2321, 2360
BssNAI GTATAC 2 cut(s) 89, 1734
BssNI GRCGYC 2 cut(s) 198, 2393
BssT1I CCWWGG 4 cut(s) 560, 782, 1995, 2136
Bst1107I GTATAC 2 cut(s) 89, 1734
Bst2UI CCWGG 8 cut(s) 155, 426, 492, 1358, 1558, 1729, 1868, 2231
Bst4CI ACNGT 5 cut(s) 449, 532, 1045, 1056, 1394
Bst6I CTCTTC 5 cut(s) 280, 330, 515, 1677, 2046
BstACI GRCGYC 2 cut(s) 198, 2393
BstBI TTCGAA 1 cut(s) 942
BstC8I GCNNGC 6 cut(s) 64, 508, 1409, 1499, 2430, 2465
BstDEI CTNAG 9 cut(s) 453, 968, 983, 1775, 1793, 1857, 1947, 2083, 2379
BstDSI CCRYGG 2 cut(s) 560, 1995
BstEII GGTNACC 2 cut(s) 122, 817
BstENI CCTNNNNNAGG 2 cut(s) 158, 2015
BstF5I GGATG 8 cut(s) 253, 319, 469, 1620, 1810, 1991, 2287, 2541
BstFNI CGCG 6 cut(s) 245, 1755, 2275, 2426, 2463, 2529
BstH2I RGCGCY 3 cut(s) 201, 877, 2499
BstHHI GCGC 8 cut(s) 118, 200, 876, 1755, 1774, 2277, 2428, 2498
BstMAI GTCTC 2 cut(s) 1634, 1720
BstMCI CGRYCG 3 cut(s) 237, 2341, 2441
BstNI CCWGG 8 cut(s) 155, 426, 492, 1358, 1558, 1729, 1868, 2231
BstNSI RCATGY 1 cut(s) 66
BstPI GGTNACC 2 cut(s) 122, 817
BstSFI CTRYAG 5 cut(s) 684, 765, 2045, 2413, 2584
BstSLI GKGCMC 3 cut(s) 2387, 2422, 2469
BstUI CGCG 6 cut(s) 245, 1755, 2275, 2426, 2463, 2529
BstV1I GCAGC 8 cut(s) 478, 698, 779, 1982, 2074, 2305, 2444, 2505
BstV2I GAAGAC 3 cut(s) 338, 370, 1897
BstX2I RGATCY 5 cut(s) 139, 1270, 1699, 1708, 2588
BstYI RGATCY 5 cut(s) 139, 1270, 1699, 1708, 2588
BstZ17I GTATAC 2 cut(s) 89, 1734
BstZI CGGCCG 1 cut(s) 2338
Bsu15I ATCGAT 1 cut(s) 666
Bsu36I CCTNAGG 1 cut(s) 453
BsuTUI ATCGAT 1 cut(s) 666
BtgI CCRYGG 2 cut(s) 560, 1995
BtsCI GGATG 8 cut(s) 253, 319, 469, 1620, 1810, 1991, 2287, 2541
BtsI GCAGTG 1 cut(s) 2422
BtsIMutI CAGTG 1 cut(s) 2422
BveI ACCTGC 2 cut(s) 2420, 2591
Cac8I GCNNGC 6 cut(s) 64, 508, 1409, 1499, 2430, 2465
CciI TCATGA 1 cut(s) 1656
CfoI GCGC 8 cut(s) 118, 200, 876, 1755, 1774, 2277, 2428, 2498
Cfr10I RCCGGY 3 cut(s) 83, 2321, 2360
Cfr13I GGNCC 7 cut(s) 386, 480, 1361, 2140, 2233, 2509, 2566
ClaI ATCGAT 1 cut(s) 666
CseI GACGC 6 cut(s) 19, 2255, 2390, 2401, 2492, 2518
CsiI ACCWGGT 2 cut(s) 153, 424
Csp6I GTAC 5 cut(s) 297, 476, 1115, 1449, 1784
CspAI ACCGGT 1 cut(s) 83
CviQI GTAC 5 cut(s) 297, 476, 1115, 1449, 1784
DdeI CTNAG 9 cut(s) 453, 968, 983, 1775, 1793, 1857, 1947, 2083, 2379
DinI GGCGCC 1 cut(s) 199
EaeI YGGCCR 3 cut(s) 336, 2133, 2338
EagI CGGCCG 1 cut(s) 2338
Eam1104I CTCTTC 5 cut(s) 280, 330, 515, 1677, 2046
EarI CTCTTC 5 cut(s) 280, 330, 515, 1677, 2046
EciI GGCGGA 1 cut(s) 2318
EclXI CGGCCG 1 cut(s) 2338
Eco130I CCWWGG 4 cut(s) 560, 782, 1995, 2136
Eco147I AGGCCT 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 1634
Eco32I GATATC 2 cut(s) 1158, 1354
Eco47I GGWCC 4 cut(s) 386, 480, 2140, 2509
Eco52I CGGCCG 1 cut(s) 2338
Eco57I CTGAAG 2 cut(s) 350, 1859
Eco81I CCTNAGG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 822
Eco91I GGTNACC 2 cut(s) 122, 817
EcoNI CCTNNNNNAGG 2 cut(s) 158, 2015
EcoO109I RGGNCCY 1 cut(s) 2140
EcoO65I GGTNACC 2 cut(s) 122, 817
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 8 cut(s) 153, 424, 490, 1356, 1556, 1727, 1866, 2229
EcoRV GATATC 2 cut(s) 1158, 1354
EcoT14I CCWWGG 4 cut(s) 560, 782, 1995, 2136
EcoT38I GRGCYC 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
ErhI CCWWGG 4 cut(s) 560, 782, 1995, 2136
FaqI GGGAC 1 cut(s) 369
FauI CCCGC 5 cut(s) 346, 2280, 2431, 2554, 2577
FblI GTMKAC 3 cut(s) 88, 1040, 1733
FokI GGATG 8 cut(s) 260, 306, 456, 1627, 1817, 1978, 2274, 2528
FriOI GRGCYC 1 cut(s) 176
FspBI CTAG 6 cut(s) 311, 725, 998, 1265, 1712, 2429
GlaI GCGC 8 cut(s) 117, 199, 875, 1754, 1773, 2276, 2427, 2497
GsaI CCCAGC 3 cut(s) 2477, 2526, 2557
GsuI CTGGAG 3 cut(s) 228, 513, 1724
HaeII RGCGCY 3 cut(s) 201, 877, 2499
HapII CCGG 9 cut(s) 84, 201, 2098, 2322, 2337, 2361, 2507, 2533, 2564
HgaI GACGC 6 cut(s) 19, 2255, 2390, 2401, 2492, 2518
HhaI GCGC 8 cut(s) 118, 200, 876, 1755, 1774, 2277, 2428, 2498
Hin1I GRCGYC 2 cut(s) 198, 2393
Hin6I GCGC 8 cut(s) 116, 198, 874, 1753, 1772, 2275, 2426, 2496
HinP1I GCGC 8 cut(s) 116, 198, 874, 1753, 1772, 2275, 2426, 2496
HpaII CCGG 9 cut(s) 84, 201, 2098, 2322, 2337, 2361, 2507, 2533, 2564
HphI GGTGA 3 cut(s) 2033, 2224, 2261
Hpy166II GTNNAC 6 cut(s) 89, 1041, 1734, 1929, 2405, 2467
Hpy188III TCNNGA 4 cut(s) 452, 1657, 1703, 2014
Hpy8I GTNNAC 6 cut(s) 89, 1041, 1734, 1929, 2405, 2467
Hpy99I CGWCG 1 cut(s) 2486
HpyAV CCTTC 8 cut(s) 106, 181, 218, 944, 1910, 2011, 2317, 2456
HpyCH4III ACNGT 5 cut(s) 449, 532, 1045, 1056, 1394
HpyCH4IV ACGT 2 cut(s) 891, 1098
HpyF3I CTNAG 9 cut(s) 453, 968, 983, 1775, 1793, 1857, 1947, 2083, 2379
HpySE526I ACGT 2 cut(s) 891, 1098
Hsp92I GRCGYC 2 cut(s) 198, 2393
HspAI GCGC 8 cut(s) 116, 198, 874, 1753, 1772, 2275, 2426, 2496
KasI GGCGCC 1 cut(s) 197
LguI GCTCTTC 2 cut(s) 280, 2046
LmnI GCTCC 2 cut(s) 203, 1121
Lsp1109I GCAGC 8 cut(s) 478, 698, 779, 1982, 2074, 2305, 2444, 2505
LweI GCATC 5 cut(s) 411, 478, 1327, 2063, 2524
MabI ACCWGGT 2 cut(s) 153, 424
MaeI CTAG 6 cut(s) 311, 725, 998, 1265, 1712, 2429
MaeII ACGT 2 cut(s) 891, 1098
MbiI CCGCTC 1 cut(s) 987
MflI RGATCY 5 cut(s) 139, 1270, 1699, 1708, 2588
MhlI GDGCHC 4 cut(s) 176, 2387, 2422, 2469
MlsI TGGCCA 1 cut(s) 2135
MluNI TGGCCA 1 cut(s) 2135
Mly113I GGCGCC 1 cut(s) 198
MlyI GAGTC 1 cut(s) 1933
MmeI TCCRAC 5 cut(s) 101, 167, 1400, 2505, 2526
Mox20I TGGCCA 1 cut(s) 2135
MscI TGGCCA 1 cut(s) 2135
MseI TTAA 2 cut(s) 1071, 1418
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 2135
MspA1I CMGCKG 2 cut(s) 2087, 2296
MspI CCGG 9 cut(s) 84, 201, 2098, 2322, 2337, 2361, 2507, 2533, 2564
Mva1269I GAATGC 3 cut(s) 260, 1079, 1211
MvaI CCWGG 8 cut(s) 155, 426, 492, 1358, 1558, 1729, 1868, 2231
MvnI CGCG 6 cut(s) 245, 1755, 2275, 2426, 2463, 2529
NarI GGCGCC 1 cut(s) 198
NciI CCSGG 2 cut(s) 2507, 2564
NcoI CCATGG 2 cut(s) 560, 1995
NheI GCTAGC 1 cut(s) 2428
NlaIV GGNNCC 7 cut(s) 141, 199, 482, 1123, 1362, 2386, 2568
NmeAIII GCCGAG 2 cut(s) 23, 209
NmuCI GTSAC 4 cut(s) 706, 2102, 2221, 2267
NspI RCATGY 1 cut(s) 66
NspV TTCGAA 1 cut(s) 942
PaeI GCATGC 1 cut(s) 66
PagI TCATGA 1 cut(s) 1656
PaqCI CACCTGC 2 cut(s) 2420, 2591
PasI CCCWGGG 1 cut(s) 2230
PceI AGGCCT 1 cut(s) 107
PciSI GCTCTTC 2 cut(s) 280, 2046
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PctI GAATGC 3 cut(s) 260, 1079, 1211
PflFI GACNNNGTC 1 cut(s) 2507
PinAI ACCGGT 1 cut(s) 83
Ple19I CGATCG 1 cut(s) 2441
PleI GAGTC 1 cut(s) 1933
PluTI GGCGCC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 1933
PpuMI RGGWCCY 1 cut(s) 2140
Psp5II RGGWCCY 1 cut(s) 2140
Psp6I CCWGG 8 cut(s) 153, 424, 490, 1356, 1556, 1727, 1866, 2229
PspEI GGTNACC 2 cut(s) 122, 817
PspFI CCCAGC 3 cut(s) 2473, 2522, 2553
PspGI CCWGG 8 cut(s) 153, 424, 490, 1356, 1556, 1727, 1866, 2229
PspN4I GGNNCC 7 cut(s) 141, 199, 482, 1123, 1362, 2386, 2568
PspPI GGNCC 7 cut(s) 386, 480, 1361, 2140, 2233, 2509, 2566
PspPPI RGGWCCY 1 cut(s) 2140
PsrI GAACNNNNNNTAC 2 cut(s) 810, 842
PstI CTGCAG 5 cut(s) 688, 769, 2049, 2417, 2588
PsuI RGATCY 5 cut(s) 139, 1270, 1699, 1708, 2588
PsyI GACNNNGTC 1 cut(s) 2507
PvuI CGATCG 1 cut(s) 2441
PvuII CAGCTG 2 cut(s) 2087, 2296
RsaI GTAC 5 cut(s) 298, 477, 1116, 1450, 1785
RsaNI GTAC 5 cut(s) 297, 476, 1115, 1449, 1784
RseI CAYNNNNRTG 1 cut(s) 410
SapI GCTCTTC 2 cut(s) 280, 2046
SaqAI TTAA 2 cut(s) 1071, 1418
Sau96I GGNCC 7 cut(s) 386, 480, 1361, 2140, 2233, 2509, 2566
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 1 cut(s) 1933
SduI GDGCHC 4 cut(s) 176, 2387, 2422, 2469
SexAI ACCWGGT 2 cut(s) 153, 424
SfaNI GCATC 5 cut(s) 411, 478, 1327, 2063, 2524
SfcI CTRYAG 5 cut(s) 684, 765, 2045, 2413, 2584
SfoI GGCGCC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 942
SinI GGWCC 4 cut(s) 386, 480, 2140, 2509
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 501, 2012
SmoI CTYRAG 2 cut(s) 501, 2012
SphI GCATGC 1 cut(s) 66
SseBI AGGCCT 1 cut(s) 107
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 1 cut(s) 1329
SspMI CTAG 6 cut(s) 311, 725, 998, 1265, 1712, 2429
StuI AGGCCT 1 cut(s) 107
StyI CCWWGG 4 cut(s) 560, 782, 1995, 2136
TaaI ACNGT 5 cut(s) 449, 532, 1045, 1056, 1394
TaiI ACGT 2 cut(s) 894, 1101
TatI WGTACW 2 cut(s) 296, 1114
TauI GCSGC 1 cut(s) 2529
Tru1I TTAA 2 cut(s) 1071, 1418
Tru9I TTAA 2 cut(s) 1071, 1418
TscAI CASTG 1 cut(s) 2422
TseFI GTSAC 4 cut(s) 706, 2102, 2221, 2267
TseI GCWGC 9 cut(s) 13, 466, 686, 767, 1970, 2087, 2293, 2432, 2493
Tsp45I GTSAC 4 cut(s) 706, 2102, 2221, 2267
TspDTI ATGAA 7 cut(s) 569, 576, 1658, 1673, 1821, 1897, 2276
TspGWI ACGGA 3 cut(s) 493, 725, 737
TspRI CASTG 1 cut(s) 2422
Tth111I GACNNNGTC 1 cut(s) 2507
VneI GTGCAC 1 cut(s) 2465
VpaK11BI GGWCC 4 cut(s) 386, 480, 2140, 2509
XagI CCTNNNNNAGG 2 cut(s) 158, 2015
XapI RAATTY 7 cut(s) 540, 851, 1017, 1026, 1250, 1414, 2170
XceI RCATGY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 1114
XmiI GTMKAC 3 cut(s) 88, 1040, 1733
XspI CTAG 6 cut(s) 311, 725, 998, 1265, 1712, 2429
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.