Rw1G039300

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000119
Physical Location & Seq
Reverse (-)
66851818 .. 66856003
4186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039300.1

Sequence Viewer

Length: 1770 bp
ATGTTTAAGCCTACTGATGAAGAAGCCCCAGAAGTAAGTATGACAGCTGGTCACAATACTCATTCTGAATACGACCGGAGACAATCAGAACTGAAAAAAAACAAAAGCAGAATTAGTTCGTGGTGGACTAGTTTATGGGTTCGAGGTACATGGTGGGATTCGATATTTGTAGCCTCGTGTGTTATCGCAGTCTCACTGGATCCACTGTTCTTTTACATTCCTATCATCGATAGGGAAAAAAAGTGCCTTCAAGCAGACAGACAATTGAGGACTGTAACTCTCATTTTGCGATCAGTGATGGATATCACTTTTATAGTGCATATTATCTATCAGATTCGTGAAGCTATGATCGCTGCAGCCCCCGATAAGATGGCTAACCAGGAAGAACCGAAGTCTTCCGATTTCTTTAAAGGACCCTTCTTTAAACGTGTCGGTGCAATAGTTGACAATTTGTCATGGCGCTCTCTCATAACTGACATTCTAGCTGTTCTTCCCATCCCACAGGTGCTACTACTTGTTGTCTTCTTTAAAATGAGAGGCTCTGGATATTTGAACCACAGAAAGATTTTGAATTTCTTTCTTCTCCTTCAATATTTGGCAAGAATTTATCGTATTCACCTATCTTCCAAAAAACTTACAAAGAGTCATGGAATATGGATTAAAGGACTATTCAATTTATTTCTCTATATCTTTGCAAGTCACGTACTTGGAGCCTTTTGGTATTTCTTTTCGATTCAACGAGAGACATCATGTTGGCATCGAAGTTGCGGTCCCAACTGTATAAGTACCTTTTATTGTGATGAGTACAAACATTCAGACGATATGGTGACACTTATAACATCTCTGAATGCATCGTGCCCTATAAATACTACTGGACCATTTGATTTTGGAATATTTCTTGATTCTCTAAAGTCCAATAACCCGGCATCAATCAACTTTCCACAAAAGTTGTGTTACTCTTTTTGGTGGGGTCTACGAAATTTGAGTAATTTTGGCACGAATCTTGTAACAAGTAACTATGTATGGGAGAATTTATTCGCAATTCTTATTTCTATCATTGGCTTGTTACTGTTTTTGTACCTCATCGGAAATGTGCAGACATTTATGTCTATGGGAACTGCAAAGTCAGAGGAGATAAGAAGGAAGATCAAATCAAAAAAGCAAGTTATGAAAGAGTGGATGGAGAAAAATTGCCTCCCTGCTAAGTTGAGGAAAGAAATCATGGCAAATATAAGAGAAAAATTAGAACAAGACAACCATGCTGACATGGGGGATCTGTACTCCATTCTTCCCTCGTCAACCAAAAAATCTCTAAAGCGTGCTCTCTGCATGAGTACACTGAGAAAAGTACCAAGGCTTGAAGGTATGAATCCAAAAGTTTTGAAAATGATATGTGACTATCTGAAGCCTGTGACATACCCTGAGCATCACTATGTTGCCAAGGTGGATGAACCAGTTGATCAGATGGTGCTTGTCAAAGAAGGAACTATGTGGATCTACTCGTCGAATACTAGTACTCCATCAAAGATCCACAGGACGGTTGAGAACGGTGGCATTTATGGAGATGAACAACTTCTGAGTTGGGCATCGAAGGACATGCAACACGTCTCGTTTGAAAACCTCCCGATCTCAAAAGAAAATGTGAAATGTCATACAAAAGTGGAAGGGTTTGCTATCGCGGCCAAGGACTTGAAAGATGTGGCCACCAAGTGCAAAATGTTTTGGAATTACGATGATCCTCGAGAGAGAGGGTGGCGAGCTCTACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

589

Amino Acids

68.13

Weight (kDa)

9.23

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 50 - 372 5.6e-12 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AasI GACNNNNNNGTC 1 cut(s) 1105
AccI GTMKAC 1 cut(s) 973
AccII CGCG 1 cut(s) 1679
AciI CCGC 2 cut(s) 768, 1679
AclWI GGATC 6 cut(s) 194, 207, 1281, 1502, 1522, 1730
AcoI YGGCCR 2 cut(s) 1680, 1701
AcsI RAATTY 4 cut(s) 571, 603, 979, 1030
AcuI CTGAAG 1 cut(s) 1424
AdeI CACNNNGTG 1 cut(s) 1710
AfaI GTAC 9 cut(s) 148, 705, 787, 806, 1079, 1280, 1336, 1350, 1516
AfiI CCNNNNNNNGG 1 cut(s) 1537
AflIII ACRYGT 2 cut(s) 427, 1603
AhdI GACNNNNNGTC 2 cut(s) 48, 451
AhlI ACTAGT 2 cut(s) 128, 1511
AjiI CACGTC 1 cut(s) 1606
AjnI CCWGG 1 cut(s) 378
AloI GAACNNNNNNTCC 2 cut(s) 191, 223
AluBI AGCT 4 cut(s) 47, 344, 485, 1760
AluI AGCT 4 cut(s) 47, 344, 485, 1760
Alw21I GWGCWC 2 cut(s) 1324, 1762
Alw26I GTCTC 4 cut(s) 73, 196, 737, 1612
AlwI GGATC 6 cut(s) 194, 207, 1281, 1502, 1522, 1730
Ama87I CYCGRG 1 cut(s) 1740
AoxI GGCC 2 cut(s) 1680, 1701
ApeKI GCWGC 2 cut(s) 353, 356
ApoI RAATTY 4 cut(s) 571, 603, 979, 1030
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
Asp700I GAANNNNTTC 3 cut(s) 115, 1034, 1572
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 3 cut(s) 413, 770, 875
AsuC2I CCSGG 1 cut(s) 923
AsuHPI GGTGA 2 cut(s) 608, 838
AvaI CYCGRG 1 cut(s) 1740
AvaII GGWCC 3 cut(s) 413, 770, 875
BaeGI GKGCMC 1 cut(s) 860
BalI TGGCCA 1 cut(s) 1703
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 1762
BauI CACGAG 1 cut(s) 175
BbsI GAAGAC 2 cut(s) 387, 514
Bbv12I GWGCWC 2 cut(s) 1324, 1762
BbvI GCAGC 2 cut(s) 340, 368
BccI CCATC 6 cut(s) 292, 364, 503, 1174, 1459, 1528
BcgI CGANNNNNNTGC 2 cut(s) 1579, 1613
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 1459
BcnI CCSGG 1 cut(s) 923
BcoDI GTCTC 4 cut(s) 73, 196, 737, 1612
BcuI ACTAGT 2 cut(s) 128, 1511
BfaI CTAG 3 cut(s) 129, 482, 1512
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 463
BisI GCNGC 3 cut(s) 354, 357, 1680
BlsI GCNGC 3 cut(s) 355, 358, 1681
BmcAI AGTACT 1 cut(s) 1516
Bme1390I CCNGG 2 cut(s) 380, 923
Bme18I GGWCC 3 cut(s) 413, 770, 875
BmeRI GACNNNNNGTC 2 cut(s) 48, 451
BmeT110I CYCGRG 1 cut(s) 1740
BmgBI CACGTC 1 cut(s) 1606
BmgT120I GGNCC 3 cut(s) 413, 770, 875
BmiI GGNNCC 4 cut(s) 201, 415, 712, 772
BmrFI CCNGG 2 cut(s) 380, 923
BmsI GCATC 5 cut(s) 766, 860, 935, 1435, 1595
BpiI GAAGAC 2 cut(s) 387, 514
Bpu10I CCTNAGC 1 cut(s) 1422
BpuMI CCSGG 1 cut(s) 923
Bsa29I ATCGAT 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 703
BsaBI GATNNNNATC 1 cut(s) 302
BsaJI CCNNGG 3 cut(s) 1352, 1440, 1683
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 1501, 1531
Bsc4I CCNNNNNNNGG 1 cut(s) 1537
Bse1I ACTGG 3 cut(s) 201, 877, 1454
Bse8I GATNNNNATC 1 cut(s) 302
BseBI CCWGG 1 cut(s) 380
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 3 cut(s) 1352, 1440, 1683
BseGI GGATG 3 cut(s) 495, 1185, 1453
BseJI GATNNNNATC 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 1537
BseMII CTCAG 3 cut(s) 1331, 1413, 1568
BseNI ACTGG 3 cut(s) 201, 877, 1454
BseRI GAGGAG 1 cut(s) 1145
BseSI GKGCMC 1 cut(s) 860
BseXI GCAGC 2 cut(s) 340, 368
BsgI GTGCAG 1 cut(s) 1115
Bsh1236I CGCG 1 cut(s) 1679
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 1682, 1703
BshVI ATCGAT 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 2 cut(s) 1324, 1762
BsiHKCI CYCGRG 1 cut(s) 1740
BsiSI CCGG 2 cut(s) 76, 923
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 1 cut(s) 1537
BsmAI GTCTC 4 cut(s) 73, 196, 737, 1612
BsmBI CGTCTC 1 cut(s) 1612
BsmFI GGGAC 1 cut(s) 756
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 2 cut(s) 1682, 1703
BsoBI CYCGRG 1 cut(s) 1740
Bsp1286I GDGCHC 3 cut(s) 860, 1324, 1762
BspACI CCGC 2 cut(s) 768, 1679
BspANI GGCC 2 cut(s) 1682, 1703
BspCNI CTCAG 3 cut(s) 1332, 1414, 1569
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 1679
BspLI GGNNCC 4 cut(s) 201, 415, 712, 772
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 6 cut(s) 194, 207, 1281, 1502, 1522, 1730
BsrI ACTGG 3 cut(s) 201, 877, 1454
BssECI CCNNGG 3 cut(s) 1352, 1440, 1683
BssSI CACGAG 1 cut(s) 175
BssT1I CCWWGG 3 cut(s) 1352, 1440, 1683
Bst2BI CACGAG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 6 cut(s) 207, 274, 779, 1071, 1540, 1550
BstBAI YACGTR 1 cut(s) 703
BstC8I GCNNGC 2 cut(s) 1320, 1758
BstDEI CTNAG 4 cut(s) 1203, 1340, 1422, 1577
BstF5I GGATG 3 cut(s) 495, 1185, 1453
BstFNI CGCG 1 cut(s) 1679
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 1 cut(s) 462
BstMAI GTCTC 4 cut(s) 73, 196, 737, 1612
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 350, 1679
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 1600
BstSCI CCNGG 2 cut(s) 378, 921
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 860
BstUI CGCG 1 cut(s) 1679
BstV1I GCAGC 2 cut(s) 340, 368
BstV2I GAAGAC 2 cut(s) 387, 514
BstX2I RGATCY 4 cut(s) 199, 1273, 1494, 1527
BstYI RGATCY 4 cut(s) 199, 1273, 1494, 1527
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 2 cut(s) 1682, 1703
BsuTUI ATCGAT 1 cut(s) 228
BtrI CACGTC 1 cut(s) 1606
BtsCI GGATG 3 cut(s) 495, 1185, 1453
BtsIMutI CAGTG 4 cut(s) 194, 203, 300, 1337
Cac8I GCNNGC 2 cut(s) 1320, 1758
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 3 cut(s) 413, 770, 875
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 9 cut(s) 147, 704, 786, 805, 1078, 1279, 1335, 1349, 1515
CspCI CAANNNNNGTGG 2 cut(s) 930, 965
CviAII CATG 9 cut(s) 150, 456, 647, 750, 1222, 1259, 1267, 1330, 1597
CviQI GTAC 9 cut(s) 147, 704, 786, 805, 1078, 1279, 1335, 1349, 1515
DdeI CTNAG 4 cut(s) 1203, 1340, 1422, 1577
DraI TTTAAA 3 cut(s) 409, 424, 529
DraIII CACNNNGTG 1 cut(s) 1710
DrdI GACNNNNNNGTC 1 cut(s) 1105
DriI GACNNNNNGTC 2 cut(s) 48, 451
DseDI GACNNNNNNGTC 1 cut(s) 1105
EaeI YGGCCR 2 cut(s) 1680, 1701
Eam1105I GACNNNNNGTC 2 cut(s) 48, 451
Ecl136II GAGCTC 1 cut(s) 1760
Eco130I CCWWGG 3 cut(s) 1352, 1440, 1683
Eco24I GRGCYC 1 cut(s) 1762
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 3 cut(s) 413, 770, 875
Eco53kI GAGCTC 1 cut(s) 1760
Eco57I CTGAAG 1 cut(s) 1424
Eco88I CYCGRG 1 cut(s) 1740
EcoICRI GAGCTC 1 cut(s) 1760
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 378
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 3 cut(s) 1352, 1440, 1683
EcoT22I ATGCAT 1 cut(s) 853
EcoT38I GRGCYC 1 cut(s) 1762
ErhI CCWWGG 3 cut(s) 1352, 1440, 1683
Esp3I CGTCTC 1 cut(s) 1612
FaeI CATG 9 cut(s) 153, 459, 650, 753, 1225, 1262, 1270, 1333, 1600
FaqI GGGAC 1 cut(s) 756
FatI CATG 9 cut(s) 149, 455, 646, 749, 1221, 1258, 1266, 1329, 1596
FbaI TGATCA 1 cut(s) 1459
FblI GTMKAC 1 cut(s) 973
Fnu4HI GCNGC 3 cut(s) 354, 357, 1680
FokI GGATG 3 cut(s) 482, 1192, 1460
FriOI GRGCYC 1 cut(s) 1762
Fsp4HI GCNGC 3 cut(s) 354, 357, 1680
FspBI CTAG 3 cut(s) 129, 482, 1512
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 354, 357, 1680
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 2 cut(s) 1682, 1703
HapII CCGG 2 cut(s) 76, 923
HhaI GCGC 1 cut(s) 462
Hin1II CATG 9 cut(s) 153, 459, 650, 753, 1225, 1262, 1270, 1333, 1600
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 2 cut(s) 445, 1299
HindII GTYRAC 2 cut(s) 445, 1299
HinfI GANTC 7 cut(s) 158, 334, 643, 733, 902, 1000, 1369
HpaII CCGG 2 cut(s) 76, 923
HphI GGTGA 2 cut(s) 608, 838
Hpy166II GTNNAC 5 cut(s) 126, 445, 974, 1299, 1337
Hpy188III TCNNGA 5 cut(s) 338, 543, 899, 1624, 1742
Hpy8I GTNNAC 5 cut(s) 126, 445, 974, 1299, 1337
Hpy99I CGWCG 1 cut(s) 1507
HpyAV CCTTC 8 cut(s) 257, 427, 596, 1134, 1355, 1475, 1585, 1658
HpyCH4III ACNGT 6 cut(s) 207, 274, 779, 1071, 1540, 1550
HpyCH4IV ACGT 3 cut(s) 427, 702, 1605
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 1679
HpyF3I CTNAG 4 cut(s) 1203, 1340, 1422, 1577
HpySE526I ACGT 3 cut(s) 427, 702, 1605
Hsp92II CATG 9 cut(s) 153, 459, 650, 753, 1225, 1262, 1270, 1333, 1600
HspAI GCGC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 1459
LmnI GCTCC 1 cut(s) 710
Lsp1109I GCAGC 2 cut(s) 340, 368
LweI GCATC 5 cut(s) 766, 860, 935, 1435, 1595
MaeI CTAG 3 cut(s) 129, 482, 1512
MaeII ACGT 3 cut(s) 427, 702, 1605
MboII GAAGA 9 cut(s) 32, 387, 395, 482, 514, 572, 615, 1156, 1280
MfeI CAATTG 1 cut(s) 263
MflI RGATCY 4 cut(s) 199, 1273, 1494, 1527
MhlI GDGCHC 3 cut(s) 860, 1324, 1762
MlsI TGGCCA 1 cut(s) 1703
MluNI TGGCCA 1 cut(s) 1703
MlyI GAGTC 1 cut(s) 652
Mox20I TGGCCA 1 cut(s) 1703
Mph1103I ATGCAT 1 cut(s) 853
MroXI GAANNNNTTC 3 cut(s) 115, 1034, 1572
MscI TGGCCA 1 cut(s) 1703
MseI TTAA 5 cut(s) 6, 408, 423, 528, 660
MslI CAYNNNNRTG 1 cut(s) 1431
Msp20I TGGCCA 1 cut(s) 1703
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 76, 923
MspR9I CCNGG 2 cut(s) 380, 923
MunI CAATTG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 1679
MwoI GCNNNNNNNGC 2 cut(s) 350, 1679
NciI CCSGG 1 cut(s) 923
NlaIII CATG 9 cut(s) 153, 459, 650, 753, 1225, 1262, 1270, 1333, 1600
NlaIV GGNNCC 4 cut(s) 201, 415, 712, 772
NmuCI GTSAC 5 cut(s) 50, 698, 826, 1394, 1411
NsiI ATGCAT 1 cut(s) 853
NspI RCATGY 1 cut(s) 1600
PaeR7I CTCGAG 1 cut(s) 1740
PctI GAATGC 1 cut(s) 853
PdmI GAANNNNTTC 3 cut(s) 115, 1034, 1572
PfeI GAWTC 6 cut(s) 158, 334, 733, 902, 1000, 1369
PkrI GCNGC 3 cut(s) 355, 358, 1681
PleI GAGTC 1 cut(s) 651
PpsI GAGTC 1 cut(s) 651
Ppu21I YACGTR 1 cut(s) 703
PpuMI RGGWCCY 1 cut(s) 413
PsiI TTATAA 1 cut(s) 836
Psp124BI GAGCTC 1 cut(s) 1762
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 4 cut(s) 201, 415, 712, 772
PspPI GGNCC 3 cut(s) 413, 770, 875
PspPPI RGGWCCY 1 cut(s) 413
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 4 cut(s) 199, 1273, 1494, 1527
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 9 cut(s) 148, 705, 787, 806, 1079, 1280, 1336, 1350, 1516
RsaNI GTAC 9 cut(s) 147, 704, 786, 805, 1078, 1279, 1335, 1349, 1515
RseI CAYNNNNRTG 1 cut(s) 1431
SacI GAGCTC 1 cut(s) 1762
SaqAI TTAA 5 cut(s) 6, 408, 423, 528, 660
SatI GCNGC 3 cut(s) 354, 357, 1680
Sau96I GGNCC 3 cut(s) 413, 770, 875
ScaI AGTACT 1 cut(s) 1516
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 2 cut(s) 380, 923
SduI GDGCHC 3 cut(s) 860, 1324, 1762
SfaNI GCATC 5 cut(s) 766, 860, 935, 1435, 1595
SfcI CTRYAG 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 1740
SinI GGWCC 3 cut(s) 413, 770, 875
SlaI CTCGAG 1 cut(s) 1740
SmiMI CAYNNNNRTG 1 cut(s) 1431
SmlI CTYRAG 1 cut(s) 1740
SmoI CTYRAG 1 cut(s) 1740
SpeI ACTAGT 2 cut(s) 128, 1511
SsiI CCGC 2 cut(s) 768, 1679
SspI AATATT 2 cut(s) 593, 894
SspMI CTAG 3 cut(s) 129, 482, 1512
SstI GAGCTC 1 cut(s) 1762
StyD4I CCNGG 2 cut(s) 378, 921
StyI CCWWGG 3 cut(s) 1352, 1440, 1683
TaaI ACNGT 6 cut(s) 207, 274, 779, 1071, 1540, 1550
TaiI ACGT 3 cut(s) 430, 705, 1608
TaqI TCGA 8 cut(s) 142, 161, 228, 731, 760, 1505, 1589, 1741
TatI WGTACW 4 cut(s) 804, 1278, 1334, 1514
TauI GCSGC 1 cut(s) 1682
TfiI GAWTC 6 cut(s) 158, 334, 733, 902, 1000, 1369
Tru1I TTAA 5 cut(s) 6, 408, 423, 528, 660
Tru9I TTAA 5 cut(s) 6, 408, 423, 528, 660
TscAI CASTG 4 cut(s) 201, 210, 300, 1344
TseFI GTSAC 5 cut(s) 50, 698, 826, 1394, 1411
TseI GCWGC 2 cut(s) 353, 356
Tsp45I GTSAC 5 cut(s) 50, 698, 826, 1394, 1411
TspDTI ATGAA 5 cut(s) 33, 1184, 1382, 1464, 1581
TspRI CASTG 4 cut(s) 201, 210, 300, 1344
VpaK11BI GGWCC 3 cut(s) 413, 770, 875
XapI RAATTY 4 cut(s) 571, 603, 979, 1030
XceI RCATGY 1 cut(s) 1600
XhoI CTCGAG 1 cut(s) 1740
XmiI GTMKAC 1 cut(s) 973
XmnI GAANNNNTTC 3 cut(s) 115, 1034, 1572
XspI CTAG 3 cut(s) 129, 482, 1512
ZrmI AGTACT 1 cut(s) 1516
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.