Rw1G039390

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000119
Physical Location & Seq
Reverse (-)
66976106 .. 66979041
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039390.1

Sequence Viewer

Length: 1944 bp
ATGTCTAAACATAAGGTACCCAACCACGATGAGAGCATCATCGATTTGAGCGTTACACAAGGAATAGGTTATGATTTCAACTGTCCTGAGGCTCTATTGCAACGTCCAATACGGAAATGTGAACCTGAAGAAACTGAAGCAAGCGCCAAAGGGAAAATGCCAACAGTTGCGGAGATTCTCTCAGTTTTGAACCCATGGTGGAATGCGATACTATTAACTTCATGTGTGATTGCAGTTTTATTTGATCCTTTGTTCTTTTACATTCCATACATCAATGAGAAAGAAAAGTGCATGGGAATTGATAAACAAGTGCGGACTGCAGCTCTGGTTTTCCGATCAGTCACGGACATCACTTTCCTAGTGCATATCATATACCAACTTCGTGAAGCTATCAAATTTGCAGCCTCAAAGGTTCCAAGGGATAAAAATTCAAAAAATTGGGAATGGGAATCGGTATCCCGAGTTCAGATGATTCAGTTTGCAAAGGAATTTTCTCGCAAATTGTCGTGGCGCTCTTTCCTAACTGATGTTTTCGCTATTTTCCCCATGCCACAACTGCTAATTGTAGGGTTCTTTTTCGAAATGGGAGGCAGTCACTATTTGGAGAGAAGAAAGATTCTGAGCGGTTTTGTTCTAGTCCAATATGTGCCAAGAATTTATCGAATTTATCTATCGTATACCGCGGTTACACATTCCGCATTATGGGTTAAAGGTGCATTCAATTTTTTCCTCTACATCCTTGCCAGTCATATACTGGGAGCTTTTTGGTACTTTTTTTCTATTTTTCGAGAGACATCATGTTGGTACCGAAGTTGCAAAATTGATGCATATCCAGGATCAAGATGTACTTTTTATTGCCATGACAAAACTCCAATTGTAACGGACGGATTCAATAAAACTACTCTAGGAGATCTTTGCCTTGTAAAAGTTCCATATGATATGACTGAACCACCATTTGATTTTGGAATATTTTTTGATGCCCTCAAAAATGATATCCATGGGCCAATAAATTTTCCAACAAAGATTGGTTTCTGCTTTTGGTGGGCCTTGCGAAATTTAAGTAATTTTGGCACAAGTTTGGAAACAAGTACCTATCTGTGGGAAAACACCTTTGCAATTCTTATTTCTATCATCGGCTTGCTATTGTTTTTATATCTCATTGGAAACGTTCAGTTATATATGGAGAGGGCAACTACAAGAGCGGAGGAGGTAAGAGAGAAGATTCAGACCAAAAAGAAAGATATAGAAAAGTGGATGGAAAAAAATGGCCTCCAAGATGACATGAAGGAAGAGATCATGAAAAACATTAAGCAGAAATTGGAAGAGGACATAAATGCAGATCTGGAGAATCTATTCTCTGTTCTTCCCTGGTATACCAAGAAAGCTCTAAAGCGCGTTCTTTTCATGAGTACGCTAAGAAAAGTACCAATGCTTAGCCAGATGGATGAAAAAGTTTTGAAAATGATGTGCGACTATCTGAAGCCGGTGAATTACCCAGAGAATACCTTGGTTTTTCAGATGGGAGAACCATTTGATCGAATGCTCTTCATTACAGAAGGGCTTATGTGGACTTACACGACTGCTACTGAGAGTAGTCATTATGGAAAAGCAACAGAACCGGCTACTTGTCCATCCATGTATACCAACTTCCTCAAGACGGGTGATTCTTATGGACACGCGCTTCTACAGTTTGCATCATCATCTTTTGCGGCACTTCCTACCTCGAACGCAAATGTCCGGTGTCACACAAAGGTTAAGGCGTTTGTTCTCATGGCCAAGGACTTGAAAAACATAGTAACTAAATGCGAACATTTGTGGCCTTTCGACTACAATGCTTCTAAAGATGAGGCGGCGGATCATGTGCCACTACTGGGAAGTTTCAGCAACAAGAAGAGCCAAAGAAGGGTGTATCGATCAACATCGACCACTGGCAACCGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

647

Amino Acids

74.8

Weight (kDa)

8.75

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 16, 804
AccB1I GGYRCC 2 cut(s) 16, 804
AccBSI CCGCTC 2 cut(s) 624, 1202
AccI GTMKAC 3 cut(s) 677, 1373, 1640
AccII CGCG 3 cut(s) 683, 1395, 1679
AclI AACGTT 1 cut(s) 1167
AclWI GGATC 3 cut(s) 239, 844, 1863
AcoI YGGCCR 1 cut(s) 1773
AcsI RAATTY 7 cut(s) 395, 427, 488, 654, 663, 1009, 1054
AcuI CTGAAG 3 cut(s) 147, 156, 1499
AfaI GTAC 7 cut(s) 18, 770, 806, 847, 1090, 1411, 1425
AfiI CCNNNNNNNGG 5 cut(s) 702, 1098, 1657, 1871, 1903
AgsI TTSAA 7 cut(s) 79, 190, 432, 721, 892, 1459, 1786
AjnI CCWGG 2 cut(s) 832, 1367
AluBI AGCT 4 cut(s) 323, 389, 761, 1385
AluI AGCT 4 cut(s) 323, 389, 761, 1385
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 3 cut(s) 239, 844, 1863
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 5 cut(s) 1001, 1044, 1267, 1773, 1817
ApeKI GCWGC 2 cut(s) 320, 401
ApoI RAATTY 7 cut(s) 395, 427, 488, 654, 663, 1009, 1054
Asp700I GAANNNNTTC 1 cut(s) 1352
Asp718I GGTACC 2 cut(s) 16, 804
AspLEI GCGC 4 cut(s) 146, 513, 1395, 1681
AspS9I GGNCC 2 cut(s) 1001, 1044
AsuHPI GGTGA 2 cut(s) 1498, 1673
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 1 cut(s) 459
AxyI CCTNAGG 1 cut(s) 87
BaeI ACNNNNGTAYC 2 cut(s) 796, 829
BalI TGGCCA 1 cut(s) 1775
BanI GGYRCC 2 cut(s) 16, 804
BarI GAAGNNNNNNTAC 2 cut(s) 1631, 1663
BbvI GCAGC 2 cut(s) 332, 413
BccI CCATC 4 cut(s) 1249, 1435, 1513, 1639
BcgI CGANNNNNNTGC 2 cut(s) 1814, 1848
BciT130I CCWGG 2 cut(s) 834, 1369
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 3 cut(s) 359, 635, 905
BfmI CTRYAG 2 cut(s) 318, 1685
BfoI RGCGCY 2 cut(s) 147, 514
BfuI GTATCC 1 cut(s) 466
BglII AGATCT 2 cut(s) 910, 1339
BisI GCNGC 4 cut(s) 321, 402, 1710, 1851
BlpI GCTNAGC 1 cut(s) 1433
BlsI GCNGC 4 cut(s) 322, 403, 1711, 1852
Bme1390I CCNGG 2 cut(s) 834, 1369
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 1001, 1044
BmiI GGNNCC 3 cut(s) 18, 414, 806
BmrFI CCNGG 2 cut(s) 834, 1369
BmrI ACTGGG 2 cut(s) 764, 1880
BmsI GCATC 4 cut(s) 45, 814, 967, 1703
BmuI ACTGGG 2 cut(s) 764, 1880
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 1364
Bpu1102I GCTNAGC 1 cut(s) 1433
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 1637
Bsa29I ATCGAT 2 cut(s) 42, 1912
BsaBI GATNNNNATC 2 cut(s) 828, 1918
BsaJI CCNNGG 8 cut(s) 194, 416, 681, 997, 1367, 1506, 1776, 1936
BsaWI WCCGGW 1 cut(s) 1737
Bsc4I CCNNNNNNNGG 5 cut(s) 702, 1098, 1657, 1871, 1903
Bse118I RCCGGY 2 cut(s) 1483, 1618
Bse1I ACTGG 4 cut(s) 744, 759, 1875, 1933
Bse21I CCTNAGG 1 cut(s) 87
Bse8I GATNNNNATC 2 cut(s) 828, 1918
BseBI CCWGG 2 cut(s) 834, 1369
BseCI ATCGAT 2 cut(s) 42, 1912
BseDI CCNNGG 8 cut(s) 194, 416, 681, 997, 1367, 1506, 1776, 1936
BseGI GGATG 4 cut(s) 735, 1260, 1450, 1631
BseJI GATNNNNATC 2 cut(s) 828, 1918
BseLI CCNNNNNNNGG 5 cut(s) 702, 1098, 1657, 1871, 1903
BseMII CTCAG 4 cut(s) 78, 195, 611, 1578
BseNI ACTGG 4 cut(s) 744, 759, 1875, 1933
BseRI GAGGAG 1 cut(s) 1220
BseXI GCAGC 2 cut(s) 332, 413
Bsh1236I CGCG 3 cut(s) 683, 1395, 1679
BshFI GGCC 5 cut(s) 1003, 1046, 1269, 1775, 1819
BshNI GGYRCC 2 cut(s) 16, 804
BshVI ATCGAT 2 cut(s) 42, 1912
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 3 cut(s) 1484, 1619, 1738
BslI CCNNNNNNNGG 5 cut(s) 702, 1098, 1657, 1871, 1903
BsmAI GTCTC 1 cut(s) 785
BsmI GAATGC 3 cut(s) 208, 716, 1545
BsnI GGCC 5 cut(s) 1003, 1046, 1269, 1775, 1819
BsoBI CYCGRG 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 579
Bsp143I GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
Bsp1720I GCTNAGC 1 cut(s) 1433
Bsp19I CCATGG 2 cut(s) 194, 997
BspANI GGCC 5 cut(s) 1003, 1046, 1269, 1775, 1819
BspCNI CTCAG 4 cut(s) 79, 194, 612, 1579
BspDI ATCGAT 2 cut(s) 42, 1912
BspFNI CGCG 3 cut(s) 683, 1395, 1679
BspHI TCATGA 2 cut(s) 1296, 1404
BspLI GGNNCC 3 cut(s) 18, 414, 806
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 239, 844, 1863
BspQI GCTCTTC 2 cut(s) 1550, 1886
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 2 cut(s) 16, 804
BsrBI CCGCTC 2 cut(s) 624, 1202
BsrFI RCCGGY 2 cut(s) 1483, 1618
BsrI ACTGG 4 cut(s) 744, 759, 1875, 1933
BssAI RCCGGY 2 cut(s) 1483, 1618
BssECI CCNNGG 8 cut(s) 194, 416, 681, 997, 1367, 1506, 1776, 1936
BssMI GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
BssNAI GTATAC 3 cut(s) 678, 1374, 1641
BssT1I CCWWGG 5 cut(s) 194, 416, 997, 1506, 1776
Bst1107I GTATAC 3 cut(s) 678, 1374, 1641
Bst2UI CCWGG 2 cut(s) 834, 1369
Bst4CI ACNGT 4 cut(s) 83, 166, 1689, 1937
Bst6I CTCTTC 4 cut(s) 1284, 1317, 1550, 1886
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 142, 1139
BstDEI CTNAG 6 cut(s) 87, 181, 620, 1415, 1433, 1587
BstDSI CCRYGG 4 cut(s) 194, 681, 997, 1936
BstF5I GGATG 4 cut(s) 735, 1260, 1450, 1631
BstFNI CGCG 3 cut(s) 683, 1395, 1679
BstH2I RGCGCY 2 cut(s) 147, 514
BstHHI GCGC 4 cut(s) 146, 513, 1395, 1681
BstKTI GATC 9 cut(s) 247, 338, 839, 913, 1296, 1342, 1537, 1858, 1916
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNI CCWGG 2 cut(s) 834, 1369
BstSCI CCNGG 2 cut(s) 832, 1367
BstSFI CTRYAG 2 cut(s) 318, 1685
BstUI CGCG 3 cut(s) 683, 1395, 1679
BstV1I GCAGC 2 cut(s) 332, 413
BstX2I RGATCY 2 cut(s) 910, 1339
BstYI RGATCY 2 cut(s) 910, 1339
BstZ17I GTATAC 3 cut(s) 678, 1374, 1641
Bsu15I ATCGAT 2 cut(s) 42, 1912
Bsu36I CCTNAGG 1 cut(s) 87
BsuI GTATCC 1 cut(s) 466
BsuRI GGCC 5 cut(s) 1003, 1046, 1269, 1775, 1819
BsuTUI ATCGAT 2 cut(s) 42, 1912
BtgI CCRYGG 4 cut(s) 194, 681, 997, 1936
BtsCI GGATG 4 cut(s) 735, 1260, 1450, 1631
BtsIMutI CAGTG 1 cut(s) 1926
Cac8I GCNNGC 2 cut(s) 142, 1139
CciI TCATGA 2 cut(s) 1296, 1404
CfoI GCGC 4 cut(s) 146, 513, 1395, 1681
Cfr10I RCCGGY 2 cut(s) 1483, 1618
Cfr13I GGNCC 2 cut(s) 1001, 1044
Cfr42I CCGCGG 1 cut(s) 684
ClaI ATCGAT 2 cut(s) 42, 1912
Csp6I GTAC 7 cut(s) 17, 769, 805, 846, 1089, 1410, 1424
CviQI GTAC 7 cut(s) 17, 769, 805, 846, 1089, 1410, 1424
DdeI CTNAG 6 cut(s) 87, 181, 620, 1415, 1433, 1587
DpnI GATC 9 cut(s) 246, 337, 838, 912, 1295, 1341, 1536, 1857, 1915
DpnII GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
EaeI YGGCCR 1 cut(s) 1773
Eam1104I CTCTTC 4 cut(s) 1284, 1317, 1550, 1886
EarI CTCTTC 4 cut(s) 1284, 1317, 1550, 1886
EciI GGCGGA 1 cut(s) 1868
Eco130I CCWWGG 5 cut(s) 194, 416, 997, 1506, 1776
Eco32I GATATC 1 cut(s) 994
Eco57I CTGAAG 3 cut(s) 147, 156, 1499
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 459
EcoRII CCWGG 2 cut(s) 832, 1367
EcoRV GATATC 1 cut(s) 994
EcoT14I CCWWGG 5 cut(s) 194, 416, 997, 1506, 1776
EcoT22I ATGCAT 1 cut(s) 829
ErhI CCWWGG 5 cut(s) 194, 416, 997, 1506, 1776
FalI AAGNNNNNCTT 2 cut(s) 832, 864
FauNDI CATATG 1 cut(s) 934
FblI GTMKAC 3 cut(s) 677, 1373, 1640
Fnu4HI GCNGC 4 cut(s) 321, 402, 1710, 1851
FokI GGATG 4 cut(s) 722, 1267, 1457, 1618
Fsp4HI GCNGC 4 cut(s) 321, 402, 1710, 1851
FspBI CTAG 3 cut(s) 359, 635, 905
GlaI GCGC 4 cut(s) 145, 512, 1394, 1680
GluI GCNGC 4 cut(s) 321, 402, 1710, 1851
GsuI CTGGAG 1 cut(s) 1364
HaeII RGCGCY 2 cut(s) 147, 514
HaeIII GGCC 5 cut(s) 1003, 1046, 1269, 1775, 1819
HapII CCGG 3 cut(s) 1484, 1619, 1738
HhaI GCGC 4 cut(s) 146, 513, 1395, 1681
Hin6I GCGC 4 cut(s) 144, 511, 1393, 1679
HinP1I GCGC 4 cut(s) 144, 511, 1393, 1679
HinfI GANTC 8 cut(s) 175, 449, 472, 616, 888, 1222, 1348, 1664
HpaII CCGG 3 cut(s) 1484, 1619, 1738
HphI GGTGA 2 cut(s) 1498, 1673
Hpy166II GTNNAC 5 cut(s) 122, 678, 1374, 1569, 1641
Hpy188I TCNGA 6 cut(s) 335, 468, 621, 1227, 1479, 1518
Hpy188III TCNNGA 9 cut(s) 86, 383, 459, 788, 840, 1297, 1343, 1405, 1654
Hpy8I GTNNAC 5 cut(s) 122, 678, 1374, 1569, 1641
HpyAV CCTTC 3 cut(s) 1279, 1550, 1896
HpyCH4III ACNGT 4 cut(s) 83, 166, 1689, 1937
HpyCH4IV ACGT 2 cut(s) 103, 1167
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 6 cut(s) 87, 181, 620, 1415, 1433, 1587
HpySE526I ACGT 2 cut(s) 103, 1167
HspAI GCGC 4 cut(s) 144, 511, 1393, 1679
KpnI GGTACC 2 cut(s) 20, 808
KspI CCGCGG 1 cut(s) 684
Kzo9I GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
LguI GCTCTTC 2 cut(s) 1550, 1886
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 2 cut(s) 332, 413
LweI GCATC 4 cut(s) 45, 814, 967, 1703
MaeI CTAG 3 cut(s) 359, 635, 905
MaeII ACGT 2 cut(s) 103, 1167
MaeIII GTNAC 7 cut(s) 52, 340, 593, 685, 877, 1742, 1795
MalI GATC 9 cut(s) 246, 337, 838, 912, 1295, 1341, 1536, 1857, 1915
MbiI CCGCTC 2 cut(s) 624, 1202
MboI GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
MboII GAAGA 8 cut(s) 140, 621, 1231, 1301, 1334, 1355, 1537, 1903
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 2 cut(s) 910, 1339
MlsI TGGCCA 1 cut(s) 1775
MluNI TGGCCA 1 cut(s) 1775
MmeI TCCRAC 1 cut(s) 1040
Mox20I TGGCCA 1 cut(s) 1775
Mph1103I ATGCAT 1 cut(s) 829
MroXI GAANNNNTTC 1 cut(s) 1352
MscI TGGCCA 1 cut(s) 1775
MseI TTAA 5 cut(s) 215, 708, 1058, 1308, 1755
Msp20I TGGCCA 1 cut(s) 1775
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 3 cut(s) 1484, 1619, 1738
MspR9I CCNGG 2 cut(s) 834, 1369
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 3 cut(s) 208, 716, 1545
MvaI CCWGG 2 cut(s) 834, 1369
MvnI CGCG 3 cut(s) 683, 1395, 1679
MwoI GCNNNNNNNGC 1 cut(s) 556
NcoI CCATGG 2 cut(s) 194, 997
NdeI CATATG 1 cut(s) 934
NdeII GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
NlaIV GGNNCC 3 cut(s) 18, 414, 806
NmuCI GTSAC 3 cut(s) 340, 593, 1742
NsiI ATGCAT 1 cut(s) 829
NspV TTCGAA 1 cut(s) 579
PagI TCATGA 2 cut(s) 1296, 1404
PciSI GCTCTTC 2 cut(s) 1550, 1886
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 3 cut(s) 208, 716, 1545
PdmI GAANNNNTTC 1 cut(s) 1352
PfeI GAWTC 8 cut(s) 175, 449, 472, 616, 888, 1222, 1348, 1664
PfoI TCCNGGA 1 cut(s) 832
PkrI GCNGC 4 cut(s) 322, 403, 1711, 1852
Psp1406I AACGTT 1 cut(s) 1167
Psp6I CCWGG 2 cut(s) 832, 1367
PspGI CCWGG 2 cut(s) 832, 1367
PspN4I GGNNCC 3 cut(s) 18, 414, 806
PspPI GGNCC 2 cut(s) 1001, 1044
PsrI GAACNNNNNNTAC 2 cut(s) 447, 479
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 910, 1339
RsaI GTAC 7 cut(s) 18, 770, 806, 847, 1090, 1411, 1425
RsaNI GTAC 7 cut(s) 17, 769, 805, 846, 1089, 1410, 1424
SacII CCGCGG 1 cut(s) 684
SapI GCTCTTC 2 cut(s) 1550, 1886
SaqAI TTAA 5 cut(s) 215, 708, 1058, 1308, 1755
SatI GCNGC 4 cut(s) 321, 402, 1710, 1851
Sau3AI GATC 9 cut(s) 244, 335, 836, 910, 1293, 1339, 1534, 1855, 1913
Sau96I GGNCC 2 cut(s) 1001, 1044
ScrFI CCNGG 2 cut(s) 834, 1369
SfaNI GCATC 4 cut(s) 45, 814, 967, 1703
SfcI CTRYAG 2 cut(s) 318, 1685
Sfr303I CCGCGG 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 579
SgrBI CCGCGG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 1652
SmoI CTYRAG 1 cut(s) 1652
SspI AATATT 1 cut(s) 969
SspMI CTAG 3 cut(s) 359, 635, 905
StyD4I CCNGG 2 cut(s) 832, 1367
StyI CCWWGG 5 cut(s) 194, 416, 997, 1506, 1776
TaaI ACNGT 4 cut(s) 83, 166, 1689, 1937
TaiI ACGT 2 cut(s) 106, 1170
TaqI TCGA 9 cut(s) 42, 579, 661, 787, 1537, 1724, 1824, 1912, 1922
TatI WGTACW 1 cut(s) 845
TauI GCSGC 2 cut(s) 1712, 1853
TfiI GAWTC 8 cut(s) 175, 449, 472, 616, 888, 1222, 1348, 1664
Tru1I TTAA 5 cut(s) 215, 708, 1058, 1308, 1755
Tru9I TTAA 5 cut(s) 215, 708, 1058, 1308, 1755
TscAI CASTG 1 cut(s) 1933
TseFI GTSAC 3 cut(s) 340, 593, 1742
TseI GCWGC 2 cut(s) 320, 401
Tsp45I GTSAC 3 cut(s) 340, 593, 1742
TspDTI ATGAA 6 cut(s) 210, 1298, 1313, 1393, 1461, 1537
TspGWI ACGGA 4 cut(s) 127, 359, 896, 900
TspRI CASTG 1 cut(s) 1933
XapI RAATTY 7 cut(s) 395, 427, 488, 654, 663, 1009, 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XmiI GTMKAC 3 cut(s) 677, 1373, 1640
XmnI GAANNNNTTC 1 cut(s) 1352
XspI CTAG 3 cut(s) 359, 635, 905
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.