Rmu_sc0001616.1_g000015

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001616.1
OG0000119
Physical Location & Seq
Reverse (-)
83951 .. 84643
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001616.1_g000015.1.cds

Sequence Viewer

Length: 693 bp
atgccaggatcggtccttaagggagttaaggatatcgaaaagaaaccaggccaagagaataaagataccatacaagaaaaaatgttgacaagcatttgtgactttctgaagccggtgatctacccagatggtagatatgtttaccgaataggagaaccacttgatcgcatgctcttaattagagacggtttaatatggacatataacaccaccagtatcagtaggatgagtcccagtagtgctagtacaagtcaagatgaaggccaaagaacaggttcaacttgccttgggaaaggtgctttttacggcgatgaacttctgagttgggcatctgatagtcttaaatctttggacaaccttcctgtgttgaaagcaaatgctttagctcatggaaaagtagaaggatttgttcttatggccaaggacttgaaggttgtagtcgacaaatacaaaatgtattggggtttccccgattctcatgtaaaagaggaggcagcacttgaaaccataaaaaaattatgtcaagaggaggcagcacttgaaaccataaaaaaattctgtcaagtattgaaggataagaaaggtcaacaaaaggtccaaccggagcatccaaaagtacttcatgttcaaccaacatcagcagccatgaaccctacaccgaaggacgaagtagtacttaaggttcgagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

230

Amino Acids

25.64

Weight (kDa)

8.71

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 441
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 3 cut(s) 247, 618, 675
AflII CTTAAG 2 cut(s) 17, 677
AgsI TTSAA 7 cut(s) 279, 370, 430, 503, 542, 571, 629
AjnI CCWGG 2 cut(s) 4, 46
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 16
AoxI GGCC 3 cut(s) 49, 262, 417
ApeKI GCWGC 3 cut(s) 494, 533, 641
ApoI RAATTY 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 13, 595
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 2 cut(s) 13, 595
BalI TGGCCA 1 cut(s) 419
BbvI GCAGC 3 cut(s) 506, 545, 653
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 2 cut(s) 6, 48
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 1 cut(s) 243
BfrI CTTAAG 2 cut(s) 17, 677
BisI GCNGC 3 cut(s) 495, 534, 642
BlsI GCNGC 3 cut(s) 496, 535, 643
BmcAI AGTACT 2 cut(s) 618, 675
Bme1390I CCNGG 2 cut(s) 6, 48
Bme18I GGWCC 2 cut(s) 13, 595
BmgT120I GGNCC 2 cut(s) 13, 595
BmrFI CCNGG 2 cut(s) 6, 48
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 338, 616
BmuI ACTGGG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 286, 420
BsaWI WCCGGW 1 cut(s) 601
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 213, 234
BseBI CCWGG 2 cut(s) 6, 48
BseDI CCNNGG 2 cut(s) 286, 420
BseGI GGATG 2 cut(s) 231, 607
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 213, 234
BseRI GAGGAG 2 cut(s) 503, 542
BseXI GCAGC 3 cut(s) 506, 545, 653
BshFI GGCC 3 cut(s) 51, 264, 419
BsiSI CCGG 2 cut(s) 113, 602
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 3 cut(s) 51, 264, 419
Bsp143I GATC 3 cut(s) 8, 117, 163
BspANI GGCC 3 cut(s) 51, 264, 419
BspCNI CTCAG 1 cut(s) 312
BspPI GGATC 1 cut(s) 16
BspTI CTTAAG 2 cut(s) 17, 677
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 2 cut(s) 213, 234
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 286, 420
BssMI GATC 3 cut(s) 8, 117, 163
BssT1I CCWWGG 2 cut(s) 286, 420
Bst2UI CCWGG 2 cut(s) 6, 48
Bst4CI ACNGT 1 cut(s) 188
BstAFI CTTAAG 2 cut(s) 17, 677
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 231, 607
BstKTI GATC 3 cut(s) 11, 120, 166
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 3 cut(s) 8, 117, 163
BstNI CCWGG 2 cut(s) 6, 48
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 4, 46
BstV1I GCAGC 3 cut(s) 506, 545, 653
BsuRI GGCC 3 cut(s) 51, 264, 419
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 2 cut(s) 231, 607
Cac8I GCNNGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 13, 595
Csp6I GTAC 3 cut(s) 246, 617, 674
CviAII CATG 5 cut(s) 169, 389, 479, 623, 646
CviJI RGCY 6 cut(s) 51, 112, 264, 386, 419, 644
CviKI_1 RGCY 6 cut(s) 51, 112, 264, 386, 419, 644
CviQI GTAC 3 cut(s) 246, 617, 674
DdeI CTNAG 1 cut(s) 320
DpnI GATC 3 cut(s) 10, 119, 165
DpnII GATC 3 cut(s) 8, 117, 163
EaeI YGGCCR 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 286, 420
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 13, 595
Eco57I CTGAAG 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 4, 46
EcoRV GATATC 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 286, 420
ErhI CCWWGG 2 cut(s) 286, 420
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 5 cut(s) 172, 392, 482, 626, 649
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 1 cut(s) 216
FatI CATG 5 cut(s) 168, 388, 478, 622, 645
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 495, 534, 642
FokI GGATG 2 cut(s) 238, 594
Fsp4HI GCNGC 3 cut(s) 495, 534, 642
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 495, 534, 642
HaeIII GGCC 3 cut(s) 51, 264, 419
HapII CCGG 2 cut(s) 113, 602
Hin1II CATG 5 cut(s) 172, 392, 482, 626, 649
HincII GTYRAC 3 cut(s) 87, 442, 587
HindII GTYRAC 3 cut(s) 87, 442, 587
HinfI GANTC 2 cut(s) 229, 473
HpaII CCGG 2 cut(s) 113, 602
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 4 cut(s) 87, 142, 442, 587
Hpy188I TCNGA 3 cut(s) 108, 321, 334
Hpy188III TCNNGA 2 cut(s) 254, 524
Hpy8I GTNNAC 4 cut(s) 87, 142, 442, 587
HpyAV CCTTC 6 cut(s) 254, 368, 395, 424, 565, 655
HpyCH4III ACNGT 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 5 cut(s) 172, 392, 482, 626, 649
Kzo9I GATC 3 cut(s) 8, 117, 163
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 3 cut(s) 506, 545, 653
LweI GCATC 2 cut(s) 338, 616
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 98
MalI GATC 3 cut(s) 10, 119, 165
MboI GATC 3 cut(s) 8, 117, 163
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 3 cut(s) 177, 515, 554
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 4 cut(s) 481, 484, 520, 523
Mox20I TGGCCA 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 274
MscI TGGCCA 1 cut(s) 419
MseI TTAA 6 cut(s) 18, 27, 176, 191, 342, 678
Msp20I TGGCCA 1 cut(s) 419
MspCI CTTAAG 2 cut(s) 17, 677
MspI CCGG 2 cut(s) 113, 602
MspR9I CCNGG 2 cut(s) 6, 48
MvaI CCWGG 2 cut(s) 6, 48
NdeII GATC 3 cut(s) 8, 117, 163
NlaIII CATG 5 cut(s) 172, 392, 482, 626, 649
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 172
PaeI GCATGC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 3 cut(s) 496, 535, 643
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 4, 46
PspGI CCWGG 2 cut(s) 4, 46
PspPI GGNCC 2 cut(s) 13, 595
PsrI GAACNNNNNNTAC 3 cut(s) 609, 641, 666
RsaI GTAC 3 cut(s) 247, 618, 675
RsaNI GTAC 3 cut(s) 246, 617, 674
SalI GTCGAC 1 cut(s) 440
SaqAI TTAA 6 cut(s) 18, 27, 176, 191, 342, 678
SatI GCNGC 3 cut(s) 495, 534, 642
Sau3AI GATC 3 cut(s) 8, 117, 163
Sau96I GGNCC 2 cut(s) 13, 595
ScaI AGTACT 2 cut(s) 618, 675
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 6, 48
SetI ASST 8 cut(s) 277, 298, 360, 388, 435, 586, 597, 684
SfaNI GCATC 2 cut(s) 338, 616
SinI GGWCC 2 cut(s) 13, 595
SmlI CTYRAG 2 cut(s) 17, 677
SmoI CTYRAG 2 cut(s) 17, 677
SphI GCATGC 1 cut(s) 172
Sse9I AATT 3 cut(s) 177, 515, 554
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 4, 46
StyI CCWWGG 2 cut(s) 286, 420
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 36, 441, 685
TasI AATT 3 cut(s) 177, 515, 554
TatI WGTACW 3 cut(s) 245, 616, 673
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 6 cut(s) 18, 27, 176, 191, 342, 678
Tru9I TTAA 6 cut(s) 18, 27, 176, 191, 342, 678
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 3 cut(s) 494, 533, 641
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 273, 327, 611, 662
Vha464I CTTAAG 2 cut(s) 17, 677
VpaK11BI GGWCC 2 cut(s) 13, 595
XapI RAATTY 1 cut(s) 554
XceI RCATGY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 1 cut(s) 243
ZrmI AGTACT 2 cut(s) 618, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.