Rh1CG421800

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000119
Physical Location & Seq
Reverse (-)
68132989 .. 68133862
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG421800.1

Sequence Viewer

Length: 771 bp
ATGGAGAGGGCAACTACCAGGGTGGAGGAGGTAAGAGAGAAGATTTTGATAAAAAAGAACGATATAGAAAAGTGGATGGAAAAAAATGGTCTCCAAGATGACATGAAGGAAGAGATCATGAAAAACATCAAGCAAAAATTGGAAGAGGACATAAATGCAGATCTGGAGGATCTAGTCTCTATTCTTCCCTGGTATACCAAGAAAGCTCTAAAGCGCGTTCTCTGCATGAGTGCGCTAAGAAAAGTACCTATGCTTAGCCAGATGGATGAAAAAGTTTTGAAAATGATGTGCGACTATCTGAAGCCCGTAAATTACCCAGAGAATACCCTGGTTTTTCAGATGGGAGAACCACTTGATCGAATGGTCTTCATTACAGAAGGGTTTATGTGGACTTACACGACTCCAACTGAGAGTAGTCATTTTGGAAAAGCAGCAGGACTGGCTACTTCTCCATCCATGGACACCAACTTCCTCAAGAAGGGTGATTCTTATGGACACGCTCTTCTGCAGTTTGCATCATCATCTCTTGTGGCACTCCCTACCTCAGCTGCAAATGTCCGGTGTCACACAAAGGTAGAGGCGTTCGTTCTCATGGCCAAGGACCTGAAAAACATAGTAACTAAATGCGAAAATTTTTGGCCTTTCGACTACAATGCTTCTAAAGATGAGGCGGTGAATCAGGTCACACCCCTGGGCCAGTTTCGGCAACAACAAATGCCAAAGAAGCGTGTATCAACATCGATCATCAACCCCACCGGCTATAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

256

Amino Acids

29.25

Weight (kDa)

8.21

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AccII CGCG 1 cut(s) 216
AciI CCGC 1 cut(s) 671
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 4 cut(s) 17, 188, 327, 690
AluBI AGCT 2 cut(s) 206, 548
AluI AGCT 2 cut(s) 206, 548
Alw26I GTCTC 2 cut(s) 95, 181
AlwI GGATC 1 cut(s) 177
AoxI GGCC 3 cut(s) 594, 638, 694
ApeKI GCWGC 2 cut(s) 431, 548
ApoI RAATTY 1 cut(s) 631
AspLEI GCGC 2 cut(s) 216, 235
AspS9I GGNCC 2 cut(s) 601, 694
AsuHPI GGTGA 2 cut(s) 494, 685
AvaII GGWCC 1 cut(s) 601
BalI TGGCCA 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 544
BbvI GCAGC 2 cut(s) 443, 535
BccI CCATC 4 cut(s) 70, 256, 334, 460
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 4 cut(s) 19, 190, 329, 692
BcoDI GTCTC 2 cut(s) 95, 181
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 2 cut(s) 506, 760
BglII AGATCT 1 cut(s) 160
BisI GCNGC 2 cut(s) 432, 549
BlpI GCTNAGC 1 cut(s) 254
BlsI GCNGC 2 cut(s) 433, 550
Bme1390I CCNGG 4 cut(s) 19, 190, 329, 692
Bme18I GGWCC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 601, 694
BmrFI CCNGG 4 cut(s) 19, 190, 329, 692
BmsI GCATC 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 544
Bpu1102I GCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 7 cut(s) 18, 188, 327, 456, 597, 690, 691
BsaWI WCCGGW 1 cut(s) 558
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 2 cut(s) 444, 697
BseBI CCWGG 4 cut(s) 19, 190, 329, 692
BseCI ATCGAT 1 cut(s) 740
BseDI CCNNGG 7 cut(s) 18, 188, 327, 456, 597, 690, 691
BseGI GGATG 3 cut(s) 81, 271, 452
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 2 cut(s) 399, 558
BseNI ACTGG 2 cut(s) 444, 697
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 443, 535
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 3 cut(s) 596, 640, 696
BshVI ATCGAT 1 cut(s) 740
BsiSI CCGG 2 cut(s) 559, 756
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 95, 181
BsnI GGCC 3 cut(s) 596, 640, 696
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 5 cut(s) 114, 160, 169, 355, 741
Bsp1720I GCTNAGC 1 cut(s) 254
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 1 cut(s) 671
BspANI GGCC 3 cut(s) 596, 640, 696
BspCNI CTCAG 2 cut(s) 400, 557
BspDI ATCGAT 1 cut(s) 740
BspFNI CGCG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 507
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 755
BsrI ACTGG 2 cut(s) 444, 697
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 7 cut(s) 18, 188, 327, 456, 597, 690, 691
BssMI GATC 5 cut(s) 114, 160, 169, 355, 741
BssNAI GTATAC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 456, 597
Bst1107I GTATAC 1 cut(s) 195
Bst2UI CCWGG 4 cut(s) 19, 190, 329, 692
Bst6I CTCTTC 3 cut(s) 105, 138, 507
BstDEI CTNAG 4 cut(s) 236, 254, 408, 544
BstDSI CCRYGG 1 cut(s) 456
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 3 cut(s) 81, 271, 452
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 2 cut(s) 216, 235
BstKTI GATC 5 cut(s) 117, 163, 172, 358, 744
BstMAI GTCTC 2 cut(s) 95, 181
BstMBI GATC 5 cut(s) 114, 160, 169, 355, 741
BstMWI GCNNNNNNNGC 3 cut(s) 222, 440, 724
BstNI CCWGG 4 cut(s) 19, 190, 329, 692
BstSCI CCNGG 4 cut(s) 17, 188, 327, 690
BstSFI CTRYAG 2 cut(s) 506, 760
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 443, 535
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 2 cut(s) 160, 169
BstYI RGATCY 2 cut(s) 160, 169
BstZ17I GTATAC 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 740
BsuRI GGCC 3 cut(s) 596, 640, 696
BsuTUI ATCGAT 1 cut(s) 740
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 3 cut(s) 81, 271, 452
CciI TCATGA 1 cut(s) 117
CfoI GCGC 2 cut(s) 216, 235
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 601, 694
ClaI ATCGAT 1 cut(s) 740
Csp6I GTAC 1 cut(s) 245
CviAII CATG 5 cut(s) 103, 118, 226, 457, 592
CviJI RGCY 9 cut(s) 206, 258, 304, 443, 548, 596, 640, 696, 759
CviKI_1 RGCY 9 cut(s) 206, 258, 304, 443, 548, 596, 640, 696, 759
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 4 cut(s) 236, 254, 408, 544
DpnI GATC 5 cut(s) 116, 162, 171, 357, 743
DpnII GATC 5 cut(s) 114, 160, 169, 355, 741
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 3 cut(s) 105, 138, 507
EarI CTCTTC 3 cut(s) 105, 138, 507
Eco130I CCWWGG 2 cut(s) 456, 597
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 601
Eco57I CTGAAG 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 4 cut(s) 17, 188, 327, 690
EcoT14I CCWWGG 2 cut(s) 456, 597
ErhI CCWWGG 2 cut(s) 456, 597
FaeI CATG 5 cut(s) 106, 121, 229, 460, 595
FatI CATG 5 cut(s) 102, 117, 225, 456, 591
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 432, 549
FokI GGATG 3 cut(s) 88, 278, 439
Fsp4HI GCNGC 2 cut(s) 432, 549
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 215, 234
GluI GCNGC 2 cut(s) 432, 549
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 3 cut(s) 596, 640, 696
HapII CCGG 2 cut(s) 559, 756
HhaI GCGC 2 cut(s) 216, 235
Hin1II CATG 5 cut(s) 106, 121, 229, 460, 595
Hin6I GCGC 2 cut(s) 214, 233
HinP1I GCGC 2 cut(s) 214, 233
HinfI GANTC 3 cut(s) 400, 485, 676
HpaII CCGG 2 cut(s) 559, 756
HphI GGTGA 2 cut(s) 494, 685
Hpy166II GTNNAC 2 cut(s) 195, 390
Hpy188I TCNGA 2 cut(s) 300, 339
Hpy188III TCNNGA 3 cut(s) 118, 164, 475
Hpy8I GTNNAC 2 cut(s) 195, 390
HpyAV CCTTC 3 cut(s) 100, 371, 472
HpyCH4V TGCA 5 cut(s) 158, 225, 508, 515, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 440, 724
HpyF3I CTNAG 4 cut(s) 236, 254, 408, 544
Hsp92II CATG 5 cut(s) 106, 121, 229, 460, 595
HspAI GCGC 2 cut(s) 214, 233
Kzo9I GATC 5 cut(s) 114, 160, 169, 355, 741
LguI GCTCTTC 1 cut(s) 507
Lsp1109I GCAGC 2 cut(s) 443, 535
LweI GCATC 1 cut(s) 524
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 3 cut(s) 563, 616, 682
MalI GATC 5 cut(s) 116, 162, 171, 357, 743
MboI GATC 5 cut(s) 114, 160, 169, 355, 741
MboII GAAGA 6 cut(s) 52, 122, 155, 176, 358, 494
MflI RGATCY 2 cut(s) 160, 169
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 3 cut(s) 137, 310, 631
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 8 cut(s) 19, 22, 139, 160, 482, 553, 571, 661
Mox20I TGGCCA 1 cut(s) 596
MscI TGGCCA 1 cut(s) 596
Msp20I TGGCCA 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 559, 756
MspR9I CCNGG 4 cut(s) 19, 190, 329, 692
MvaI CCWGG 4 cut(s) 19, 190, 329, 692
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 222, 440, 724
NcoI CCATGG 1 cut(s) 456
NdeII GATC 5 cut(s) 114, 160, 169, 355, 741
NlaIII CATG 5 cut(s) 106, 121, 229, 460, 595
NmuCI GTSAC 2 cut(s) 563, 682
PagI TCATGA 1 cut(s) 117
PasI CCCWGGG 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 485, 676
PkrI GCNGC 2 cut(s) 433, 550
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 4 cut(s) 17, 188, 327, 690
PspGI CCWGG 4 cut(s) 17, 188, 327, 690
PspPI GGNCC 2 cut(s) 601, 694
PspPPI RGGWCCY 1 cut(s) 601
PstI CTGCAG 1 cut(s) 510
PsuI RGATCY 2 cut(s) 160, 169
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 507
SatI GCNGC 2 cut(s) 432, 549
Sau3AI GATC 5 cut(s) 114, 160, 169, 355, 741
Sau96I GGNCC 2 cut(s) 601, 694
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 4 cut(s) 19, 190, 329, 692
SetI ASST 8 cut(s) 33, 208, 250, 545, 550, 576, 606, 684
SfaNI GCATC 1 cut(s) 524
SfcI CTRYAG 2 cut(s) 506, 760
SinI GGWCC 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 3 cut(s) 137, 310, 631
SsiI CCGC 1 cut(s) 671
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 4 cut(s) 17, 188, 327, 690
StyI CCWWGG 2 cut(s) 456, 597
TaqI TCGA 3 cut(s) 358, 645, 740
TasI AATT 3 cut(s) 137, 310, 631
TfiI GAWTC 2 cut(s) 485, 676
TseFI GTSAC 2 cut(s) 563, 682
TseI GCWGC 2 cut(s) 431, 548
Tsp45I GTSAC 2 cut(s) 563, 682
TspDTI ATGAA 4 cut(s) 119, 134, 282, 358
VpaK11BI GGWCC 1 cut(s) 601
XagI CCTNNNNNAGG 1 cut(s) 476
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.