Rh1BG407900

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000119
Physical Location & Seq
Reverse (-)
53020051 .. 53026775
6725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG407900.1

Sequence Viewer

Length: 837 bp
ATGAGAAGAGGAACAGATACCGACGATGATGACGAATTAAGGATTAAAACTAACCAATGGCTTCCGTGGTCTAAAGCTCTTAAATATAAAATTATCATTGCAATAAGTGTGACCGCGATTAGGAAAATTGCTGGGGTACGAAGATTTTCCTGGGCTCTGTTAGTACCCAACTACGATGAGAGCATCATCGATTTGAGCGTTACACAAGGAATAGGTTATGATTTCAACTGTCCTGAGGCTCTATTGCAACGTCCAATACGGAAATGTGAACCTGAAGAAACTGAAGCAAGCGCCAAAGGGAAAATGCCAACAGTTGCGGAGATTCTCACAGTTTTGAACCCATGGTGGAATGCGATACTATTAACTTCATGTGTGATTGCAGTTTTATTTGATCCTTTGTTCTTTTACATTCCATACATCAATGAGAAAGAAAAGTGCATCGGAATCGATAAACAAGTGCGGACTGCAGCTCTGGTTTTCCGATCAGTCACGGACATCACTTTCCTAGTGCATATCATATACCAACTTCGTGAAGCTATCAAATTTGCAGCCTCAAAGGTTCCAAGGGATAAAAATTCAAAAAATTGGGAATGGGAATCGGTATCCCGAGTTCAGATGATTCAGTTTGCAAAGGAATTTTCTCGCAAATTGTCGTGGCGCTCTTTCCTAACTGATGTTTTCGCTATTTTCCCCATGCCACAACTGCTAATTGTAGGGTTCTTTTTCGAAATGGGAGGCAGTAACTATTTGGAGAGAAGAAAGATTCTGAGCGGTTTTGTTCTAGTCCAATATGTGCCAAGAATTTATCGAATTTATCTATCGTATACCGCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

278

Amino Acids

32.33

Weight (kDa)

9.34

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 771
AccI GTMKAC 1 cut(s) 824
AccII CGCG 2 cut(s) 116, 830
AciI CCGC 5 cut(s) 114, 317, 460, 771, 828
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 5 cut(s) 542, 574, 635, 801, 810
AcuI CTGAAG 2 cut(s) 294, 303
AfaI GTAC 2 cut(s) 138, 165
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 3 cut(s) 226, 337, 579
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 3 cut(s) 77, 470, 536
AluI AGCT 3 cut(s) 77, 470, 536
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 467, 548
ApoI RAATTY 5 cut(s) 542, 574, 635, 801, 810
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 2 cut(s) 293, 660
AsuII TTCGAA 1 cut(s) 726
AvaI CYCGRG 1 cut(s) 606
AxyI CCTNAGG 1 cut(s) 234
BanII GRGCYC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 479, 560
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 151
BciVI GTATCC 1 cut(s) 613
BfaI CTAG 2 cut(s) 506, 782
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 2 cut(s) 294, 661
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 2 cut(s) 468, 549
BlsI GCNGC 2 cut(s) 469, 550
Bme1390I CCNGG 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 606
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 192, 447
Bpu14I TTCGAA 1 cut(s) 726
Bsa29I ATCGAT 2 cut(s) 189, 447
BsaJI CCNNGG 4 cut(s) 65, 150, 341, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 151
BseCI ATCGAT 2 cut(s) 189, 447
BseDI CCNNGG 4 cut(s) 65, 150, 341, 563
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 225, 758
BseXI GCAGC 2 cut(s) 479, 560
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 116, 830
BshVI ATCGAT 2 cut(s) 189, 447
BsiHKCI CYCGRG 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 120
BsmI GAATGC 1 cut(s) 355
BsoBI CYCGRG 1 cut(s) 606
Bsp119I TTCGAA 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 391, 482
Bsp19I CCATGG 1 cut(s) 341
BspACI CCGC 5 cut(s) 114, 317, 460, 771, 828
BspCNI CTCAG 2 cut(s) 226, 759
BspDI ATCGAT 2 cut(s) 189, 447
BspFNI CGCG 2 cut(s) 116, 830
BspLI GGNNCC 1 cut(s) 561
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 1 cut(s) 386
BspT104I TTCGAA 1 cut(s) 726
BsrBI CCGCTC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 96
BssECI CCNNGG 4 cut(s) 65, 150, 341, 563
BssMI GATC 2 cut(s) 391, 482
BssNAI GTATAC 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 341, 563
Bst1107I GTATAC 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 3 cut(s) 230, 313, 331
BstBI TTCGAA 1 cut(s) 726
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 234, 767
BstDSI CCRYGG 2 cut(s) 65, 341
BstFNI CGCG 2 cut(s) 116, 830
BstH2I RGCGCY 2 cut(s) 294, 661
BstHHI GCGC 2 cut(s) 293, 660
BstKTI GATC 2 cut(s) 394, 485
BstMBI GATC 2 cut(s) 391, 482
BstMWI GCNNNNNNNGC 1 cut(s) 703
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 2 cut(s) 116, 830
BstV1I GCAGC 2 cut(s) 479, 560
BstZ17I GTATAC 1 cut(s) 825
Bsu15I ATCGAT 2 cut(s) 189, 447
Bsu36I CCTNAGG 1 cut(s) 234
BsuI GTATCC 1 cut(s) 613
BsuTUI ATCGAT 2 cut(s) 189, 447
BtgI CCRYGG 2 cut(s) 65, 341
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 2 cut(s) 293, 660
ClaI ATCGAT 2 cut(s) 189, 447
Csp6I GTAC 2 cut(s) 137, 164
CviAII CATG 3 cut(s) 342, 369, 694
CviJI RGCY 7 cut(s) 61, 77, 155, 239, 470, 536, 551
CviKI_1 RGCY 7 cut(s) 61, 77, 155, 239, 470, 536, 551
CviQI GTAC 2 cut(s) 137, 164
DdeI CTNAG 2 cut(s) 234, 767
DpnI GATC 2 cut(s) 393, 484
DpnII GATC 2 cut(s) 391, 482
Eco130I CCWWGG 2 cut(s) 341, 563
Eco24I GRGCYC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 294, 303
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 341, 563
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 341, 563
FaeI CATG 3 cut(s) 345, 372, 697
FatI CATG 3 cut(s) 341, 368, 693
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 2 cut(s) 468, 549
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 468, 549
FspBI CTAG 2 cut(s) 506, 782
GlaI GCGC 2 cut(s) 292, 659
GluI GCNGC 2 cut(s) 468, 549
GsaI CCCAGC 1 cut(s) 135
HaeII RGCGCY 2 cut(s) 294, 661
HhaI GCGC 2 cut(s) 293, 660
Hin1II CATG 3 cut(s) 345, 372, 697
Hin6I GCGC 2 cut(s) 291, 658
HinP1I GCGC 2 cut(s) 291, 658
HinfI GANTC 5 cut(s) 322, 444, 596, 619, 763
Hpy166II GTNNAC 2 cut(s) 269, 825
Hpy188I TCNGA 4 cut(s) 443, 482, 615, 768
Hpy188III TCNNGA 3 cut(s) 233, 530, 606
Hpy8I GTNNAC 2 cut(s) 269, 825
Hpy99I CGWCG 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 230, 313, 331
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 8 cut(s) 101, 247, 380, 438, 467, 511, 548, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 703
HpyF3I CTNAG 2 cut(s) 234, 767
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 3 cut(s) 345, 372, 697
HspAI GCGC 2 cut(s) 291, 658
Kzo9I GATC 2 cut(s) 391, 482
LpnPI CCDG 6 cut(s) 117, 136, 163, 246, 285, 458
Lsp1109I GCAGC 2 cut(s) 479, 560
LweI GCATC 2 cut(s) 192, 447
MaeI CTAG 2 cut(s) 506, 782
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 4 cut(s) 109, 199, 487, 740
MalI GATC 2 cut(s) 393, 484
MbiI CCGCTC 1 cut(s) 771
MboI GATC 2 cut(s) 391, 482
MboII GAAGA 4 cut(s) 18, 153, 287, 768
MhlI GDGCHC 1 cut(s) 157
MnlI CCTC 4 cut(s) 229, 562, 728, 825
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 4 cut(s) 38, 45, 81, 362
MspR9I CCNGG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 2 cut(s) 116, 830
MwoI GCNNNNNNNGC 1 cut(s) 703
NcoI CCATGG 1 cut(s) 341
NdeII GATC 2 cut(s) 391, 482
NlaIII CATG 3 cut(s) 345, 372, 697
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 2 cut(s) 109, 487
NspV TTCGAA 1 cut(s) 726
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 195, 827
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 5 cut(s) 322, 444, 596, 619, 763
PkrI GCNGC 2 cut(s) 469, 550
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 594, 626
PstI CTGCAG 1 cut(s) 469
RsaI GTAC 2 cut(s) 138, 165
RsaNI GTAC 2 cut(s) 137, 164
SaqAI TTAA 4 cut(s) 38, 45, 81, 362
SatI GCNGC 2 cut(s) 468, 549
Sau3AI GATC 2 cut(s) 391, 482
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 157
SetI ASST 8 cut(s) 79, 217, 253, 274, 472, 538, 561, 836
SfaNI GCATC 2 cut(s) 192, 447
SfcI CTRYAG 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 726
SsiI CCGC 5 cut(s) 114, 317, 460, 771, 828
SspMI CTAG 2 cut(s) 506, 782
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 2 cut(s) 341, 563
TaaI ACNGT 3 cut(s) 230, 313, 331
TaiI ACGT 1 cut(s) 253
TaqI TCGA 4 cut(s) 189, 447, 726, 808
TfiI GAWTC 5 cut(s) 322, 444, 596, 619, 763
Tru1I TTAA 4 cut(s) 38, 45, 81, 362
Tru9I TTAA 4 cut(s) 38, 45, 81, 362
TseFI GTSAC 2 cut(s) 109, 487
TseI GCWGC 2 cut(s) 467, 548
Tsp45I GTSAC 2 cut(s) 109, 487
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 3 cut(s) 54, 274, 506
XapI RAATTY 5 cut(s) 542, 574, 635, 801, 810
XmiI GTMKAC 1 cut(s) 824
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 2 cut(s) 506, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.