Rmu_sc0001393.1_g000031

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001393.1
OG0000119
Physical Location & Seq
Forward (+)
130069 .. 131051
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001393.1_g000031.1.cds

Sequence Viewer

Length: 867 bp
atggatatacaactgtggatggacagaaatggtctggataaagagataaagaacgaaatcaaggaaattgtaaaaaaaaaatcggagaaaatcaaagatgctgatatggagaacctattctatattctcccaacggcaaaccgaatatctctgaagcgagctttgtgcatggatatactaaggaaggttcccttgaggcttaaggctatggaaaagaaaccagaggagaataaagagaccatacaagaaaaagtgttgacgagcatttgtgactttctgaagccagtgatctacccggataatagatttgtttaccgcatgggagaaccacttgatcgcatgctcttaatcacggaaggtttaatatggacatataacaccaccagtatcagtaggagcaccagtagtgctagtactagacaagatgaaggccaaggaacaggttcaacgtcccttgggaaaggtgctgtttacggcgatgaacttctcagttgggcatctgatagtcttaaatctttggacaaccttcctatgttgaaagcaaatgtcaaagctcatggaaaagtagaaggatttattcttatggctaaggacttgaaagttgtagtcgacaaatacaaaatctattggcatttccgcgattctcaggtaggacaggaggtggcatgtcaagccattcaaaaagctgtccgccaattcaagcagcagcctaagaaagatcaacaaaaggtcccgcaatcggatcctccgaaagtacttgatggtccaccaacaccggcagtcatggccgcccctccaccggaggctgcagtagtactcgaggttcgatcagaagacacaacaacagttagcagtcaagtcccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

288

Amino Acids

32.47

Weight (kDa)

8.88

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 609
AccII CGCG 1 cut(s) 639
AciI CCGC 5 cut(s) 316, 637, 691, 734, 789
AclWI GGATC 2 cut(s) 737, 750
AcoI YGGCCR 1 cut(s) 786
AcuI CTGAAG 2 cut(s) 173, 299
AfaI GTAC 3 cut(s) 415, 756, 816
AfiI CCNNNNNNNGG 2 cut(s) 739, 799
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 5 cut(s) 447, 538, 598, 680, 700
AluBI AGCT 3 cut(s) 161, 554, 686
AluI AGCT 3 cut(s) 161, 554, 686
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 2 cut(s) 737, 750
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 2 cut(s) 430, 786
ApeKI GCWGC 3 cut(s) 703, 706, 806
Asp700I GAANNNNTTC 2 cut(s) 116, 442
AspS9I GGNCC 2 cut(s) 730, 764
AsuC2I CCSGG 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 2 cut(s) 730, 764
BamHI GGATCC 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 3 cut(s) 715, 718, 793
BccI CCATC 2 cut(s) 13, 755
BceAI ACGGC 2 cut(s) 150, 490
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 411, 417
BfmI CTRYAG 1 cut(s) 807
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 4 cut(s) 704, 707, 789, 807
BlsI GCNGC 4 cut(s) 705, 708, 790, 808
BmcAI AGTACT 3 cut(s) 415, 756, 816
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 2 cut(s) 730, 764
BmeT110I CYCGRG 1 cut(s) 818
BmgT120I GGNCC 2 cut(s) 730, 764
BmiI GGNNCC 3 cut(s) 189, 732, 744
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 88, 506
BpiI GAAGAC 1 cut(s) 840
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 433, 454
BsaWI WCCGGW 1 cut(s) 799
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 739, 799
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 3 cut(s) 284, 384, 402
BseDI CCNNGG 2 cut(s) 433, 454
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 739, 799
BseMII CTCAG 2 cut(s) 502, 659
BseNI ACTGG 3 cut(s) 284, 384, 402
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 3 cut(s) 715, 718, 793
Bsh1236I CGCG 1 cut(s) 639
BshFI GGCC 2 cut(s) 432, 788
BsiHKAI GWGCWC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 3 cut(s) 296, 776, 800
BslFI GGGAC 3 cut(s) 436, 716, 845
BslI CCNNNNNNNGG 2 cut(s) 739, 799
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 3 cut(s) 436, 716, 845
BsnI GGCC 2 cut(s) 432, 788
Bso31I GGTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 5 cut(s) 288, 334, 718, 742, 827
BspACI CCGC 5 cut(s) 316, 637, 691, 734, 789
BspANI GGCC 2 cut(s) 432, 788
BspCNI CTCAG 2 cut(s) 501, 658
BspFNI CGCG 1 cut(s) 639
BspLI GGNNCC 3 cut(s) 189, 732, 744
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 2 cut(s) 737, 750
BspTI CTTAAG 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 775
BsrI ACTGG 3 cut(s) 284, 384, 402
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 2 cut(s) 433, 454
BssMI GATC 5 cut(s) 288, 334, 718, 742, 827
BssT1I CCWWGG 2 cut(s) 433, 454
Bst4CI ACNGT 2 cut(s) 15, 847
BstAFI CTTAAG 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 159, 341
BstDEI CTNAG 5 cut(s) 179, 488, 588, 645, 711
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 639
BstKTI GATC 5 cut(s) 291, 337, 721, 745, 830
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 5 cut(s) 288, 334, 718, 742, 827
BstMWI GCNNNNNNNGC 2 cut(s) 671, 785
BstNSI RCATGY 2 cut(s) 343, 669
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 3 cut(s) 715, 718, 793
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 2 cut(s) 432, 788
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 159, 341
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 2 cut(s) 730, 764
Csp6I GTAC 3 cut(s) 414, 755, 815
CviAII CATG 6 cut(s) 169, 319, 340, 557, 666, 784
CviQI GTAC 3 cut(s) 414, 755, 815
DdeI CTNAG 5 cut(s) 179, 488, 588, 645, 711
DpnI GATC 5 cut(s) 290, 336, 720, 744, 829
DpnII GATC 5 cut(s) 288, 334, 718, 742, 827
EaeI YGGCCR 1 cut(s) 786
EciI GGCGGA 1 cut(s) 680
Eco130I CCWWGG 2 cut(s) 433, 454
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 730, 764
Eco57I CTGAAG 2 cut(s) 173, 299
Eco88I CYCGRG 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 730
EcoT14I CCWWGG 2 cut(s) 433, 454
ErhI CCWWGG 2 cut(s) 433, 454
FaeI CATG 6 cut(s) 172, 322, 343, 560, 669, 787
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 3 cut(s) 436, 716, 845
FatI CATG 6 cut(s) 168, 318, 339, 556, 665, 783
FauI CCCGC 1 cut(s) 741
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 704, 707, 789, 807
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 4 cut(s) 704, 707, 789, 807
FspBI CTAG 2 cut(s) 411, 417
GluI GCNGC 4 cut(s) 704, 707, 789, 807
HaeIII GGCC 2 cut(s) 432, 788
HapII CCGG 3 cut(s) 296, 776, 800
Hin1II CATG 6 cut(s) 172, 322, 343, 560, 669, 787
HincII GTYRAC 2 cut(s) 258, 610
HindII GTYRAC 2 cut(s) 258, 610
HinfI GANTC 1 cut(s) 641
HpaII CCGG 3 cut(s) 296, 776, 800
Hpy166II GTNNAC 5 cut(s) 258, 313, 472, 610, 767
Hpy188I TCNGA 7 cut(s) 85, 153, 279, 502, 742, 750, 832
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 5 cut(s) 258, 313, 472, 610, 767
HpyAV CCTTC 5 cut(s) 178, 350, 422, 536, 563
HpyCH4III ACNGT 2 cut(s) 15, 847
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 2 cut(s) 168, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 785
HpyF3I CTNAG 5 cut(s) 179, 488, 588, 645, 711
HpySE526I ACGT 1 cut(s) 449
Hsp92II CATG 6 cut(s) 172, 322, 343, 560, 669, 787
Kzo9I GATC 5 cut(s) 288, 334, 718, 742, 827
LmnI GCTCC 1 cut(s) 396
Lsp1109I GCAGC 3 cut(s) 715, 718, 793
LweI GCATC 2 cut(s) 88, 506
MaeI CTAG 2 cut(s) 411, 417
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 269
MalI GATC 5 cut(s) 290, 336, 720, 744, 829
MboI GATC 5 cut(s) 288, 334, 718, 742, 827
MboII GAAGA 1 cut(s) 845
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 2 cut(s) 66, 695
MnlI CCTC 7 cut(s) 189, 217, 652, 756, 796, 804, 814
MroXI GAANNNNTTC 2 cut(s) 116, 442
MseI TTAA 5 cut(s) 201, 347, 362, 510, 865
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 3 cut(s) 296, 776, 800
MspR9I CCNGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 2 cut(s) 671, 785
NciI CCSGG 1 cut(s) 296
NdeII GATC 5 cut(s) 288, 334, 718, 742, 827
NlaIII CATG 6 cut(s) 172, 322, 343, 560, 669, 787
NlaIV GGNNCC 3 cut(s) 189, 732, 744
NmuCI GTSAC 1 cut(s) 269
NspI RCATGY 2 cut(s) 343, 669
PaeI GCATGC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 818
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PdmI GAANNNNTTC 2 cut(s) 116, 442
PfeI GAWTC 1 cut(s) 641
PkrI GCNGC 4 cut(s) 705, 708, 790, 808
PpuMI RGGWCCY 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 730
PspN4I GGNNCC 3 cut(s) 189, 732, 744
PspPI GGNCC 2 cut(s) 730, 764
PspPPI RGGWCCY 1 cut(s) 730
PspXI VCTCGAGB 1 cut(s) 818
PsrI GAACNNNNNNTAC 2 cut(s) 807, 839
PstI CTGCAG 1 cut(s) 811
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 3 cut(s) 415, 756, 816
RsaNI GTAC 3 cut(s) 414, 755, 815
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 5 cut(s) 201, 347, 362, 510, 865
SatI GCNGC 4 cut(s) 704, 707, 789, 807
Sau3AI GATC 5 cut(s) 288, 334, 718, 742, 827
Sau96I GGNCC 2 cut(s) 730, 764
ScaI AGTACT 3 cut(s) 415, 756, 816
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 2 cut(s) 88, 506
SfcI CTRYAG 1 cut(s) 807
Sfr274I CTCGAG 1 cut(s) 818
SinI GGWCC 2 cut(s) 730, 764
SlaI CTCGAG 1 cut(s) 818
SmlI CTYRAG 3 cut(s) 193, 200, 818
SmoI CTYRAG 3 cut(s) 193, 200, 818
SphI GCATGC 1 cut(s) 343
Sse9I AATT 2 cut(s) 66, 695
SsiI CCGC 5 cut(s) 316, 637, 691, 734, 789
SspMI CTAG 2 cut(s) 411, 417
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 433, 454
TaaI ACNGT 2 cut(s) 15, 847
TaiI ACGT 1 cut(s) 452
TaqI TCGA 3 cut(s) 609, 819, 826
TasI AATT 2 cut(s) 66, 695
TatI WGTACW 3 cut(s) 413, 754, 814
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 5 cut(s) 201, 347, 362, 510, 865
Tru9I TTAA 5 cut(s) 201, 347, 362, 510, 865
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 703, 706, 806
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 441, 495
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 730, 764
XceI RCATGY 2 cut(s) 343, 669
XhoI CTCGAG 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 2 cut(s) 116, 442
XspI CTAG 2 cut(s) 411, 417
ZrmI AGTACT 3 cut(s) 415, 756, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.