MD01G1222100.v1.1

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000119
Physical Location & Seq
Reverse (-)
31455951 .. 31459770
3820 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1222100.v1.1.491

Sequence Viewer

Length: 2010 bp
ATGGCCAACGGAAGAGAAGCTTTCGATGTGGAGAAGCAGGGAGAGGGTCGGAAACCAGGGACTACAACGAGATATGCCCCAACAATGCGAATTCGTGATGAACAGGGGAAATTCCTTCTCAGATGGAGCGTGATATTTGTAATGTCCTGTGTGTTTGCCGTCACACTAGATCCTCTGTTCTTTTACATTTTAATCATTGATCAAGATAAGAAGTGCCTTCAAATGGACAAAACGCTGAGCACTACTGTTCTTGTTTTGCGATCACTCACGGATTTCATTTTCTTTGTGCATTTTATATATAAAATTTACGACGCCTTTAGAGTTCAAAAGAACAAACAGTTGACGGCTAATGAGACCGCAAATAAACTGCAACTTGTGGCCTCGAGTACCTTGCAAACCGGAGGAAATTTGGATCGGAAATCAAAAAAAATATTGTTGTGGTCATCTCTTTCTATCATAAATGATTTTCTCGCTCTTCTTCCTGTTCCACAACTGCTAATTGTAGTTGCTTTTTACAAAATGAAAGCCGCTGGATATATGGAACATAAAAAGGCTCTGAATGTCTTGCTTCTTGGTCAATATCTACCAAGGATATTTCGAATTCACCAGTCGTCCAAGGAACTTCGAGAGAATGCTGGACCATGGGTTAGAGGTCTATTCAATTTTTTTCTCTACATTCTTGCTAGTCATATACTTGGAGCTTTTTGGTATTTCTTTTCTATTCAACGAGAGACATCATGCTGGTACAGTGCATGTGCAAATCATAGTCTTGATCCTGCTGGATGTATGAATACTTTCTACTGTGGGCATCGAACTACTACTTCGAGAAATATTACACTTCTAAACAAGCATTGCAAGCTCGATACTCCAGATGGTGCTTCAGCACCATTTAATTTTGGAATATTTCTTGATTCTCTTAAGAATCATAACACAGAGCATATCCACTTTGGAAAGAAGTTCCTTTACTCTTTCTGGTGGGGCTTGCGAAATATAAGTAATTTTGGAACGAATCTGACAACAAGCACTTATGTCTGGGAAAACTTGTTTGCAATTCTTATTTCTATCATTGGCTTGCTACTGTTCTTATATCTCATCGGAAATGTGCAGAATTTAATGCTGAAAGAAGCTACAAAAACAAAAGAGGAAACACAGATAATTCAGGTGAATACGCTGAAAGAAGCTACAGAACAGATGATAATTCAGGTGAATACGCTGAAAGAAGCTACAGAACAGATGATAATTCATGTGAATATGTTGAAAGAAGCTACAAAAATAAAAGAGGAAGAGGAAAGACAGATAATTCAGGTGAAGATGCAAGGTGTCTGCAAGTGGATAATCGAAAATAAATTCCCTGATAATATCAAGAACGAAATCATGAATAGCATTGAGCAAACATTGAAAAAAAACAAAGATGCTGATGTTGACAAGCCATTTTTTATTCTTCCCTGGCAAACCAAAAGATCTGTAAAACGCCATCTTTTCATGGATACACTAAAAACAGTAAACAAGCTTAAAGACATGGATGAAAGAGTGTTGGCATTGATGTGCGATTACCTGAAGCCAGTGACATACATTGAGAACAGCTTCGTTTTCCGAAAGGGAGATCCGCTCGACTGCATGCTGTTCATTATCGAAGGGACAATGTGGACTTACGCGTCGAAGGATAGTCAAGTTGGGAATGGAATCTCATTAATGGCCACCAAGCCCCTCAGGAAAGGTCACTTTTACGGGGAAGAGCTTCTCGATTGGGCATCAGAGAGTTTCACCGAACTTCCTGTCTCCAGCAAACATGTCAAAAGTCAGACAAAAGTAGAAGCATTTATGCTCATGGCCAAGGACTTGGAAACTGTAGTCTCCAGAAGCAAACCATCTTGGCACTTGCTCAAGTGTAACAATCCTGGAGAGGTGGCAATTTCTACCTTCCTTCGTTTCCGACCACGCCCGCCCCTGTCCCCGGCTGGAACAGCGGATGCCAATGGTGGGAGCTTGCCATCGGCAGCAGGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

670

Amino Acids

76.63

Weight (kDa)

9.21

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 46 - 372 1.7e-12 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1654
AccBSI CCGCTC 1 cut(s) 1609
AccII CGCG 1 cut(s) 1655
AciI CCGC 5 cut(s) 357, 528, 1607, 1943, 1967
AclWI GGATC 4 cut(s) 164, 420, 767, 1598
AcoI YGGCCR 3 cut(s) 3, 1695, 1830
AcsI RAATTY 7 cut(s) 90, 110, 303, 406, 600, 1108, 1346
AcuI CTGAAG 2 cut(s) 864, 1577
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 388, 746
AfiI CCNNNNNNNGG 3 cut(s) 223, 1954, 1980
AflII CTTAAG 1 cut(s) 917
AflIII ACRYGT 2 cut(s) 1653, 1789
AgsI TTSAA 6 cut(s) 221, 326, 661, 725, 1258, 1399
AjnI CCWGG 3 cut(s) 55, 1445, 1897
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 4 cut(s) 347, 725, 1783, 1858
AlwI GGATC 4 cut(s) 164, 420, 767, 1598
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 4 cut(s) 3, 378, 1695, 1830
ApeKI GCWGC 1 cut(s) 1997
ApoI RAATTY 7 cut(s) 90, 110, 303, 406, 600, 1108, 1346
ArsI GACNNNNNNTTYG 2 cut(s) 1761, 1793
AseI ATTAAT 1 cut(s) 1691
Asp700I GAANNNNTTC 3 cut(s) 794, 1583, 1737
AspS9I GGNCC 1 cut(s) 638
AsuC2I CCSGG 1 cut(s) 1955
AsuHPI GGTGA 5 cut(s) 596, 1174, 1216, 1318, 1756
AsuII TTCGAA 1 cut(s) 598
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 638
AxyI CCTNAGG 1 cut(s) 1709
BalI TGGCCA 3 cut(s) 5, 1697, 1832
BarI GAAGNNNNNNTAC 2 cut(s) 947, 979
Bbv12I GWGCWC 1 cut(s) 242
BccI CCATC 5 cut(s) 117, 866, 1482, 1876, 1999
BceAI ACGGC 2 cut(s) 143, 360
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 3 cut(s) 57, 1447, 1899
BciVI GTATCC 1 cut(s) 1480
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 1955
BcoDI GTCTC 4 cut(s) 347, 725, 1783, 1858
BfaI CTAG 2 cut(s) 167, 684
BfmI CTRYAG 3 cut(s) 1182, 1224, 1848
BfrI CTTAAG 1 cut(s) 917
BfuI GTATCC 1 cut(s) 1480
BglII AGATCT 1 cut(s) 1460
BisI GCNGC 2 cut(s) 528, 1998
BlpI GCTNAGC 1 cut(s) 236
BlsI GCNGC 2 cut(s) 529, 1999
Bme1390I CCNGG 4 cut(s) 57, 1447, 1899, 1955
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 638
BmrFI CCNGG 4 cut(s) 57, 1447, 1899, 1955
BmsI GCATC 5 cut(s) 817, 1302, 1402, 1760, 1960
BplI GAGNNNNNCTC 2 cut(s) 1593, 1625
BpmI CTGGAG 4 cut(s) 852, 1765, 1840, 1920
Bpu1102I GCTNAGC 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 1868
BpuMI CCSGG 1 cut(s) 1955
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 7 cut(s) 56, 587, 615, 641, 1445, 1833, 1953
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 1954, 1980
Bse1I ACTGG 2 cut(s) 607, 1562
Bse21I CCTNAGG 1 cut(s) 1709
Bse3DI GCAATG 1 cut(s) 850
BseBI CCWGG 3 cut(s) 57, 1447, 1899
BseDI CCNNGG 7 cut(s) 56, 587, 615, 641, 1445, 1833, 1953
BseGI GGATG 3 cut(s) 788, 1528, 1975
BseLI CCNNNNNNNGG 3 cut(s) 223, 1954, 1980
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 3 cut(s) 133, 227, 1723
BseNI ACTGG 2 cut(s) 607, 1562
BsgI GTGCAG 1 cut(s) 1124
Bsh1236I CGCG 1 cut(s) 1655
BshFI GGCC 4 cut(s) 5, 380, 1697, 1832
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 399, 1955
BslFI GGGAC 3 cut(s) 73, 1651, 1936
BslI CCNNNNNNNGG 3 cut(s) 223, 1954, 1980
BsmAI GTCTC 4 cut(s) 347, 725, 1783, 1858
BsmFI GGGAC 3 cut(s) 73, 1651, 1936
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 4 cut(s) 5, 380, 1697, 1832
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 382
Bsp119I TTCGAA 1 cut(s) 598
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
Bsp1720I GCTNAGC 1 cut(s) 236
Bsp19I CCATGG 1 cut(s) 641
BspACI CCGC 5 cut(s) 357, 528, 1607, 1943, 1967
BspANI GGCC 4 cut(s) 5, 380, 1697, 1832
BspCNI CTCAG 3 cut(s) 132, 228, 1722
BspFNI CGCG 1 cut(s) 1655
BspHI TCATGA 1 cut(s) 1374
BspPI GGATC 4 cut(s) 164, 420, 767, 1598
BspQI GCTCTTC 2 cut(s) 480, 1728
BspT104I TTCGAA 1 cut(s) 598
BspTI CTTAAG 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 1609
BsrDI GCAATG 1 cut(s) 850
BsrI ACTGG 2 cut(s) 607, 1562
BssECI CCNNGG 7 cut(s) 56, 587, 615, 641, 1445, 1833, 1953
BssMI GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 4 cut(s) 587, 615, 641, 1833
Bst2UI CCWGG 3 cut(s) 57, 1447, 1899
Bst4CI ACNGT 7 cut(s) 247, 339, 749, 803, 1080, 1501, 1849
Bst6I CTCTTC 4 cut(s) 7, 480, 1278, 1728
BstACI GRCGYC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 917
BstBI TTCGAA 1 cut(s) 598
BstC8I GCNNGC 7 cut(s) 857, 983, 1073, 1619, 1943, 1988, 2002
BstDEI CTNAG 3 cut(s) 119, 236, 1709
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 3 cut(s) 788, 1528, 1975
BstFNI CGCG 1 cut(s) 1655
BstKTI GATC 7 cut(s) 172, 202, 263, 415, 775, 1463, 1606
BstMAI GTCTC 4 cut(s) 347, 725, 1783, 1858
BstMBI GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
BstMWI GCNNNNNNNGC 2 cut(s) 856, 1964
BstNI CCWGG 3 cut(s) 57, 1447, 1899
BstNSI RCATGY 3 cut(s) 756, 1621, 1793
BstSCI CCNGG 4 cut(s) 55, 1445, 1897, 1953
BstSFI CTRYAG 3 cut(s) 1182, 1224, 1848
BstUI CGCG 1 cut(s) 1655
BstX2I RGATCY 3 cut(s) 169, 1460, 1603
BstXI CCANNNNNNTGG 1 cut(s) 1840
BstYI RGATCY 3 cut(s) 169, 1460, 1603
Bsu36I CCTNAGG 1 cut(s) 1709
BsuI GTATCC 1 cut(s) 1480
BsuRI GGCC 4 cut(s) 5, 380, 1697, 1832
BtgI CCRYGG 1 cut(s) 641
BtsCI GGATG 3 cut(s) 788, 1528, 1975
BtsIMutI CAGTG 2 cut(s) 754, 1569
Cac8I GCNNGC 7 cut(s) 857, 983, 1073, 1619, 1943, 1988, 2002
CciI TCATGA 1 cut(s) 1374
Cfr13I GGNCC 1 cut(s) 638
CseI GACGC 2 cut(s) 320, 1644
Csp6I GTAC 2 cut(s) 387, 745
CviQI GTAC 2 cut(s) 387, 745
DdeI CTNAG 3 cut(s) 119, 236, 1709
DpnI GATC 7 cut(s) 171, 201, 262, 414, 774, 1462, 1605
DpnII GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
DrdI GACNNNNNNGTC 1 cut(s) 1654
DseDI GACNNNNNNGTC 1 cut(s) 1654
EaeI YGGCCR 3 cut(s) 3, 1695, 1830
Eam1104I CTCTTC 4 cut(s) 7, 480, 1278, 1728
EarI CTCTTC 4 cut(s) 7, 480, 1278, 1728
Eco130I CCWWGG 4 cut(s) 587, 615, 641, 1833
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 2 cut(s) 864, 1577
Eco81I CCTNAGG 1 cut(s) 1709
Eco88I CYCGRG 1 cut(s) 382
EcoRI GAATTC 2 cut(s) 90, 600
EcoRII CCWGG 3 cut(s) 55, 1445, 1897
EcoT14I CCWWGG 4 cut(s) 587, 615, 641, 1833
ErhI CCWWGG 4 cut(s) 587, 615, 641, 1833
FalI AAGNNNNNCTT 1 cut(s) 36
FaqI GGGAC 3 cut(s) 73, 1651, 1936
FauI CCCGC 1 cut(s) 1950
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 528, 1998
FokI GGATG 3 cut(s) 795, 1535, 1982
Fsp4HI GCNGC 2 cut(s) 528, 1998
FspBI CTAG 2 cut(s) 167, 684
GluI GCNGC 2 cut(s) 528, 1998
GsuI CTGGAG 4 cut(s) 852, 1765, 1840, 1920
HaeIII GGCC 4 cut(s) 5, 380, 1697, 1832
HapII CCGG 2 cut(s) 399, 1955
HgaI GACGC 2 cut(s) 320, 1644
Hin1I GRCGYC 1 cut(s) 312
HincII GTYRAC 2 cut(s) 342, 1423
HindII GTYRAC 2 cut(s) 342, 1423
HindIII AAGCTT 2 cut(s) 18, 1508
HinfI GANTC 4 cut(s) 911, 922, 1009, 1683
HpaII CCGG 2 cut(s) 399, 1955
HphI GGTGA 5 cut(s) 596, 1174, 1216, 1318, 1756
Hpy166II GTNNAC 4 cut(s) 342, 1423, 1504, 1647
Hpy8I GTNNAC 4 cut(s) 342, 1423, 1504, 1647
Hpy99I CGWCG 2 cut(s) 314, 1660
HpyAV CCTTC 6 cut(s) 125, 227, 1628, 1654, 1930, 1934
HpyCH4III ACNGT 7 cut(s) 247, 339, 749, 803, 1080, 1501, 1849
HpyF10VI GCNNNNNNNGC 2 cut(s) 856, 1964
HpyF3I CTNAG 3 cut(s) 119, 236, 1709
Hsp92I GRCGYC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
LguI GCTCTTC 2 cut(s) 480, 1728
LmnI GCTCC 3 cut(s) 126, 698, 1983
LweI GCATC 5 cut(s) 817, 1302, 1402, 1760, 1960
MaeI CTAG 2 cut(s) 167, 684
MaeIII GTNAC 4 cut(s) 160, 1564, 1718, 1889
MalI GATC 7 cut(s) 171, 201, 262, 414, 774, 1462, 1605
MbiI CCGCTC 1 cut(s) 1609
MboI GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
MboII GAAGA 7 cut(s) 24, 467, 470, 1295, 1321, 1433, 1745
MflI RGATCY 3 cut(s) 169, 1460, 1603
MhlI GDGCHC 1 cut(s) 242
MlsI TGGCCA 3 cut(s) 5, 1697, 1832
MluI ACGCGT 1 cut(s) 1653
MluNI TGGCCA 3 cut(s) 5, 1697, 1832
MmeI TCCRAC 2 cut(s) 29, 1957
Mox20I TGGCCA 3 cut(s) 5, 1697, 1832
MroXI GAANNNNTTC 3 cut(s) 794, 1583, 1737
MscI TGGCCA 3 cut(s) 5, 1697, 1832
MseI TTAA 6 cut(s) 191, 891, 918, 1112, 1512, 1691
MslI CAYNNNNRTG 1 cut(s) 1543
Msp20I TGGCCA 3 cut(s) 5, 1697, 1832
MspA1I CMGCKG 2 cut(s) 530, 1967
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 2 cut(s) 399, 1955
MspR9I CCNGG 4 cut(s) 57, 1447, 1899, 1955
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 3 cut(s) 57, 1447, 1899
MvnI CGCG 1 cut(s) 1655
MwoI GCNNNNNNNGC 2 cut(s) 856, 1964
NciI CCSGG 1 cut(s) 1955
NcoI CCATGG 1 cut(s) 641
NdeII GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
NmuCI GTSAC 3 cut(s) 160, 1564, 1718
NspI RCATGY 3 cut(s) 756, 1621, 1793
NspV TTCGAA 1 cut(s) 598
PaeI GCATGC 1 cut(s) 1621
PaeR7I CTCGAG 1 cut(s) 382
PagI TCATGA 1 cut(s) 1374
PciI ACATGT 1 cut(s) 1789
PciSI GCTCTTC 2 cut(s) 480, 1728
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 3 cut(s) 794, 1583, 1737
PfeI GAWTC 4 cut(s) 911, 922, 1009, 1683
PfoI TCCNGGA 1 cut(s) 1897
PkrI GCNGC 2 cut(s) 529, 1999
PscI ACATGT 1 cut(s) 1789
PshBI ATTAAT 1 cut(s) 1691
Psp6I CCWGG 3 cut(s) 55, 1445, 1897
PspGI CCWGG 3 cut(s) 55, 1445, 1897
PspPI GGNCC 1 cut(s) 638
PspXI VCTCGAGB 1 cut(s) 382
PsuI RGATCY 3 cut(s) 169, 1460, 1603
RsaI GTAC 2 cut(s) 388, 746
RsaNI GTAC 2 cut(s) 387, 745
RseI CAYNNNNRTG 1 cut(s) 1543
SapI GCTCTTC 2 cut(s) 480, 1728
SaqAI TTAA 6 cut(s) 191, 891, 918, 1112, 1512, 1691
SatI GCNGC 2 cut(s) 528, 1998
Sau3AI GATC 7 cut(s) 169, 199, 260, 412, 772, 1460, 1603
Sau96I GGNCC 1 cut(s) 638
ScrFI CCNGG 4 cut(s) 57, 1447, 1899, 1955
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 5 cut(s) 817, 1302, 1402, 1760, 1960
SfcI CTRYAG 3 cut(s) 1182, 1224, 1848
Sfr274I CTCGAG 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 598
SinI GGWCC 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 1543
SmlI CTYRAG 3 cut(s) 382, 917, 1883
SmoI CTYRAG 3 cut(s) 382, 917, 1883
SphI GCATGC 1 cut(s) 1621
SsiI CCGC 5 cut(s) 357, 528, 1607, 1943, 1967
SspI AATATT 3 cut(s) 432, 832, 903
SspMI CTAG 2 cut(s) 167, 684
StyD4I CCNGG 4 cut(s) 55, 1445, 1897, 1953
StyI CCWWGG 4 cut(s) 587, 615, 641, 1833
TaaI ACNGT 7 cut(s) 247, 339, 749, 803, 1080, 1501, 1849
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 4 cut(s) 911, 922, 1009, 1683
Tru1I TTAA 6 cut(s) 191, 891, 918, 1112, 1512, 1691
Tru9I TTAA 6 cut(s) 191, 891, 918, 1112, 1512, 1691
TscAI CASTG 2 cut(s) 754, 1569
TseFI GTSAC 3 cut(s) 160, 1564, 1718
TseI GCWGC 1 cut(s) 1997
Tsp45I GTSAC 3 cut(s) 160, 1564, 1718
TspDTI ATGAA 9 cut(s) 114, 265, 536, 803, 1232, 1391, 1471, 1539, 1615
TspGWI ACGGA 2 cut(s) 24, 284
TspRI CASTG 2 cut(s) 754, 1569
Vha464I CTTAAG 1 cut(s) 917
VpaK11BI GGWCC 1 cut(s) 638
VspI ATTAAT 1 cut(s) 1691
XapI RAATTY 7 cut(s) 90, 110, 303, 406, 600, 1108, 1346
XceI RCATGY 3 cut(s) 756, 1621, 1793
XhoI CTCGAG 1 cut(s) 382
XmnI GAANNNNTTC 3 cut(s) 794, 1583, 1737
XspI CTAG 2 cut(s) 167, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.