pycom07g26440

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
26451445 .. 26451759
315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26440.1

Sequence Viewer

Length: 315 bp
ATGGCCATCAAGCCCCTTGGGAAAGGTCACTTTTACAAGGAAGAACTTGTCGATTGGGCAAACTGTTTCACCGAATTTCTAGTCTCCAGCAAACATGTCAAAACGGACAAAAGTAGAAGCATTTGTGCTCATGTCCCAGGACTTGGAAACTGTAGTCTCCAGATGCAAAACATATTGAGAATTGTGCAATGTAACAGTCCTGAAGAGGTGGCACTTGCTACCATCCGTCGTGTGTATACCAATGCGCTCGCCTTGTCCCCGGCTAGAATAGCGGATGTCAATGGTGAGAGCTTGCCATTGACAGTAGGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.4

Weight (kDa)

8.42

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AccI GTMKAC 1 cut(s) 236
AciI CCGC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 94
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 88, 161
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AspLEI GCGC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 61, 296
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 2 cut(s) 14, 230
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 88, 161
BfaI CTAG 2 cut(s) 80, 264
BfmI CTRYAG 1 cut(s) 151
Bme1390I CCNGG 2 cut(s) 138, 260
BmrFI CCNGG 2 cut(s) 138, 260
BmsI GCATC 1 cut(s) 153
BpmI CTGGAG 2 cut(s) 70, 143
BpuMI CCSGG 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 16, 136, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 16, 136, 258
BseGI GGATG 2 cut(s) 222, 280
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 194
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 2 cut(s) 119, 241
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 88, 161
BsmFI GGGAC 2 cut(s) 119, 241
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 130
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 16, 136, 258
BssNAI GTATAC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 65, 152, 197, 304
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 249, 293
BstF5I GGATG 2 cut(s) 222, 280
BstHHI GCGC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 88, 161
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 136, 258
BstSFI CTRYAG 1 cut(s) 151
BstZ17I GTATAC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 222, 280
Cac8I GCNNGC 2 cut(s) 249, 293
CfoI GCGC 1 cut(s) 247
CviAII CATG 2 cut(s) 95, 131
CviJI RGCY 4 cut(s) 5, 13, 263, 291
CviKI_1 RGCY 4 cut(s) 5, 13, 263, 291
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 2 cut(s) 98, 134
FaiI YATR 4 cut(s) 96, 132, 173, 237
FaqI GGGAC 2 cut(s) 119, 241
FatI CATG 2 cut(s) 94, 130
FblI GTMKAC 1 cut(s) 236
FokI GGATG 2 cut(s) 209, 287
FspBI CTAG 2 cut(s) 80, 264
GlaI GCGC 1 cut(s) 246
GsuI CTGGAG 2 cut(s) 70, 143
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 98, 134
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HpaII CCGG 1 cut(s) 260
HphI GGTGA 2 cut(s) 61, 296
Hpy166II GTNNAC 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 160, 200
Hpy8I GTNNAC 1 cut(s) 237
Hpy99I CGWCG 1 cut(s) 231
HpyCH4III ACNGT 4 cut(s) 65, 152, 197, 304
HpyCH4V TGCA 2 cut(s) 166, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 98, 134
HspAI GCGC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 100, 123, 150, 173, 213, 273
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 80, 264
MaeIII GTNAC 2 cut(s) 26, 191
MboII GAAGA 2 cut(s) 53, 215
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 74, 180, 310
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 199
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 138, 260
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 260
NlaIII CATG 2 cut(s) 98, 134
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 98
PciI ACATGT 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 143
PscI ACATGT 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 138, 260
SduI GDGCHC 1 cut(s) 130
SetI ASST 3 cut(s) 28, 210, 293
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 151
Sse9I AATT 3 cut(s) 74, 180, 310
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 80, 264
StyD4I CCNGG 2 cut(s) 136, 258
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 4 cut(s) 65, 152, 197, 304
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 74, 180, 310
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspGWI ACGGA 2 cut(s) 119, 215
Van91I CCANNNNNTGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 2 cut(s) 80, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.