Rmu_sc0008053.1_g000026

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008053.1
OG0000119
Physical Location & Seq
Forward (+)
86950 .. 87432
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008053.1_g000026.1.cds

Sequence Viewer

Length: 483 bp
atggatgagaaagtgttgaaaatgatctgcgactatctaaagtcagagatgtatgctgagggcgccatggtttttcacatgggagacccacttgatagcatgctattcattacagaaggcactatactgacctacaaaactaccagtgctgctagtcatgctcatgaaaacgcaaaaatgggtccttctgcatccgcatcaattgttacccttgagaaaggcgacttctatggtgaacaactgctgtactgggcatcacaaaagaatgtcaatttaacggaggttcctagcactgccgacaatgtgaagtgccatacgaaagtagaaggctttgttctcatggccaaggacgtgagaactgtagtctccaaatgtgagttatggtggaaattaagaattagtaatcctagcgtgggtggtgctcggaccacaccaaatgtcaggaatgtgcaccaaaaaactggactggatctccagtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

6.51

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 248, 479
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 1 cut(s) 19
AjiI CACGTC 1 cut(s) 352
Alw21I GWGCWC 2 cut(s) 424, 453
Alw26I GTCTC 2 cut(s) 78, 370
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 1 cut(s) 477
AoxI GGCC 1 cut(s) 342
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 182, 426
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 2 cut(s) 182, 426
BaeGI GKGCMC 1 cut(s) 453
BalI TGGCCA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
Bbv12I GWGCWC 2 cut(s) 424, 453
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 78, 370
BfaI CTAG 4 cut(s) 153, 288, 408, 481
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmcAI AGTACT 1 cut(s) 479
Bme18I GGWCC 2 cut(s) 182, 426
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 182, 426
BmiI GGNNCC 3 cut(s) 64, 183, 285
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 3 cut(s) 200, 206, 263
BmuI ACTGGG 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 458
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 66, 345
BsaXI ACNNNNNCTCC 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 5 cut(s) 144, 254, 466, 471, 475
BseDI CCNNGG 2 cut(s) 66, 345
BseGI GGATG 2 cut(s) 10, 191
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 5 cut(s) 144, 254, 466, 471, 475
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 344
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 2 cut(s) 424, 453
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 2 cut(s) 78, 370
BsnI GGCC 1 cut(s) 344
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 424, 453
Bsp143I GATC 2 cut(s) 24, 469
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 64, 183, 285
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 78
BsrI ACTGG 5 cut(s) 144, 254, 466, 471, 475
BssECI CCNNGG 2 cut(s) 66, 345
BssMI GATC 2 cut(s) 24, 469
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 66, 345
Bst4CI ACNGT 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 10, 191
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 27, 472
BstMAI GTCTC 2 cut(s) 78, 370
BstMBI GATC 2 cut(s) 24, 469
BstMWI GCNNNNNNNGC 2 cut(s) 62, 158
BstNSI RCATGY 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 66
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 2 cut(s) 10, 191
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 151, 291
Cac8I GCNNGC 1 cut(s) 101
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 182, 426
Csp6I GTAC 2 cut(s) 247, 478
CviAII CATG 6 cut(s) 67, 79, 100, 158, 164, 340
CviJI RGCY 2 cut(s) 330, 344
CviKI_1 RGCY 2 cut(s) 330, 344
CviQI GTAC 2 cut(s) 247, 478
DdeI CTNAG 1 cut(s) 57
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 26, 471
DpnII GATC 2 cut(s) 24, 469
EaeI YGGCCR 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 66, 345
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 182, 426
EcoO109I RGGNCCY 1 cut(s) 182
EcoT14I CCWWGG 2 cut(s) 66, 345
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 2 cut(s) 66, 345
FaeI CATG 6 cut(s) 70, 82, 103, 161, 167, 343
FatI CATG 6 cut(s) 66, 78, 99, 157, 163, 339
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 17, 178
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 4 cut(s) 153, 288, 408, 481
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 344
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 6 cut(s) 70, 82, 103, 161, 167, 343
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 236, 451
Hpy188I TCNGA 2 cut(s) 46, 426
Hpy188III TCNNGA 2 cut(s) 164, 442
Hpy8I GTNNAC 2 cut(s) 236, 451
HpyAV CCTTC 3 cut(s) 110, 195, 320
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 191, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 158
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 6 cut(s) 70, 82, 103, 161, 167, 343
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 24, 469
LpnPI CCDG 5 cut(s) 157, 235, 427, 447, 452
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 3 cut(s) 200, 206, 263
MaeI CTAG 4 cut(s) 153, 288, 408, 481
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 26, 471
MboI GATC 2 cut(s) 24, 469
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 424, 453
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 4 cut(s) 201, 271, 389, 396
MluNI TGGCCA 1 cut(s) 344
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 2 cut(s) 52, 274
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 2 cut(s) 275, 392
MslI CAYNNNNRTG 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 344
MunI CAATTG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 62, 158
NarI GGCGCC 1 cut(s) 63
NcoI CCATGG 1 cut(s) 66
NdeII GATC 2 cut(s) 24, 469
NlaIII CATG 6 cut(s) 70, 82, 103, 161, 167, 343
NlaIV GGNNCC 3 cut(s) 64, 183, 285
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PagI TCATGA 1 cut(s) 163
PkrI GCNGC 1 cut(s) 151
PluTI GGCGCC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 64, 183, 285
PspPI GGNCC 2 cut(s) 182, 426
PspPPI RGGWCCY 1 cut(s) 182
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 2 cut(s) 248, 479
RsaNI GTAC 2 cut(s) 247, 478
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 275, 392
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 24, 469
Sau96I GGNCC 2 cut(s) 182, 426
ScaI AGTACT 1 cut(s) 479
SduI GDGCHC 2 cut(s) 424, 453
SetI ASST 3 cut(s) 134, 285, 354
SfaNI GCATC 3 cut(s) 200, 206, 263
SfcI CTRYAG 1 cut(s) 360
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 2 cut(s) 182, 426
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 103
Sse9I AATT 4 cut(s) 201, 271, 389, 396
SsiI CCGC 1 cut(s) 195
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 4 cut(s) 153, 288, 408, 481
StyI CCWWGG 2 cut(s) 66, 345
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 354
TasI AATT 4 cut(s) 201, 271, 389, 396
TatI WGTACW 2 cut(s) 246, 477
Tru1I TTAA 2 cut(s) 275, 392
Tru9I TTAA 2 cut(s) 275, 392
TscAI CASTG 2 cut(s) 151, 298
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 97, 180
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 151, 298
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 182, 426
XceI RCATGY 1 cut(s) 103
XspI CTAG 4 cut(s) 153, 288, 408, 481
ZrmI AGTACT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.