Rw3G024330

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000119
Physical Location & Seq
Reverse (-)
31211112 .. 31214500
3389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024330.1

Sequence Viewer

Length: 1806 bp
ATGATGAGCAACACACGGGGAAGCAAGCACAATGCCGACAATGTTGAGTCACAACTGCGAGATCCCCTGTGGAGAGATCCAGATGCAGTTTCAACAAAACAAAAATTGGGAGAAGCACTTCTTTCAGTTTCATTCTGGAATAAGATGTTCGTAATTTCATGTATGATCGCGGTCTCATTAGACCCGTTGTTCTTCTACATTCCAGTCATCAAGGAAGAACGAAAGTGTCTTGCATTAGACATAGAGTTGATGATTATAGCTCTCACTTTGCGATCGCTCACTGATGTCACTTTCGTAGTGAGTATCATATATCATGTTTGCAAAGCCATCAACGATGCGCACAAAGAACACAGACAAAAAAAGTCTGATGAAGTGGCACCGGATTGGGAATTTTCAAAGTTATCAGCAGCGGAGATAATTCCATATGCTAAATTAGTTGCTGGGAAGCTAGCATGGCGCTCTACGCTAACCAGCATTTTAGCTGTTTTTCCCATGCCACAACTGCTTCTAATATTTGTCTTCTTCGAAATGAGAGGCCATGGACACTTGCGGCATAGAAAGATTCTGAATTTCTTTGTTCTAGCTCAATATCTGCCGAGGATTTATCGAATCTACCTATCATCTCAGAAACTCAGACAAACTACTGGAATATGGATTAAAGCTCTATTTAACTTTTTTCTATATATCCTTGCAAGTCATGTCCTTGGAGCTTTTTGGTACTTTTTCTCTATTCAACGAGAAACTTCTTGTTGGCGTCGAGCATGTGTAAAGAATAGTACAGTTGAAGGATGTAAGACTACCTTATATTGCGAGGGTCACAATATTACTGCAAGAGATCCCGCACTCCTTAATCAATTTTGCTCTATAAGTGCTGAAGAGAATGCTACGGCCGCTTTTGATTTTGGAATATTTCTGCATTCCCTCAAAAATAATATCACACGGGATATACCTTTCGGAACAAAGTTATCTTACTCTTTTTGGTGGGGATTACGTAATCTAAGTAATTTTGGCACAAATCTCGAAACAAGCAACTATGTGTGGGAAACTTGCTTTGCAGTTTCTATTTCTGTCATTGGCTTGCTACTATTTATATATCTCATTGGAAATGTACAGACATTCGTGTCCATGGAAGCTGAAAGATGGGAGGATATAAGAAACAAGATACGATTGAAAGAGAAAGATATAAGAGGATGGATGGACAGACATAAGGTCCCAGAGAATTTGAAGAAAGAAATTAAGAAGAGGATTGAGAAAAAACTGGAAGAGAACAAAGATACTGATCATGGGATTCTTTTCTTTAATATTCCGATGAGGTGTCTTAGGCATTTCCTCGGCAAGAAACTGCTAGAGAAAGTACCGAAGCTTGCAATGATGGATAAAAGAGTGTTGAAAATGATGTGTGACAATCTAAAGCCAGTGATGCATGACGAGGGCGCCGAGGTTTTTCAAATGGGAGCTCCACTAGATAGAATGCTACTCATCACAGAAGGCACATTATTGACCTACAAAAGTAACAGTAATGATTGTCATGTTGCAACTGAAAACACAGTGCGCGACTTTTACGTCCCCGAAGAACTGATCGAGTGGGTAACAGAAAAGAAGGAGCTACGCCAGCTTCCCTGCTCTTCCTTCAATGTGAAATGCAGTTCGAAAGTAGAAGGCTTTGAACTCATGGCCAAGGACTTGAGAAGTGTAGTTTCCAAAAACGAAAACAGGTGGAAATATAGCATTAGCCAGTCAGACAACAGCATGGCGCAGAAACAAGGAGTGAATCCCAGTACTAGCAGAGACCTGGAGCGCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

601

Amino Acids

69.6

Weight (kDa)

9.07

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1120, 1562
Acc16I TGCGCA 1 cut(s) 339
AccB1I GGYRCC 2 cut(s) 376, 1433
AccII CGCG 3 cut(s) 170, 1554, 1800
AciI CCGC 5 cut(s) 170, 410, 550, 840, 891
AclWI GGATC 3 cut(s) 56, 71, 830
AcoI YGGCCR 2 cut(s) 888, 1674
AcsI RAATTY 3 cut(s) 389, 568, 1219
AcuI CTGAAG 1 cut(s) 894
AcyI GRCGYC 2 cut(s) 754, 1434
AfaI GTAC 5 cut(s) 719, 778, 1110, 1356, 1780
AhdI GACNNNNNGTC 1 cut(s) 1208
AjnI CCWGG 1 cut(s) 1791
Alw21I GWGCWC 1 cut(s) 1459
Alw26I GTCTC 2 cut(s) 178, 1782
AlwI GGATC 3 cut(s) 56, 71, 830
AoxI GGCC 3 cut(s) 535, 888, 1674
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 3 cut(s) 389, 568, 1219
AsiSI GCGATCGC 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 7 cut(s) 340, 459, 1436, 1554, 1756, 1800, 1802
AspS9I GGNCC 1 cut(s) 1210
AsuII TTCGAA 2 cut(s) 525, 1649
AsuNHI GCTAGC 1 cut(s) 448
AvaII GGWCC 1 cut(s) 1210
BalI TGGCCA 1 cut(s) 1676
BanI GGYRCC 2 cut(s) 376, 1433
BanII GRGCYC 1 cut(s) 1459
BbsI GAAGAC 1 cut(s) 511
Bbv12I GWGCWC 1 cut(s) 1459
BbvI GCAGC 1 cut(s) 419
BccI CCATC 5 cut(s) 335, 1134, 1185, 1189, 1366
BceAI ACGGC 1 cut(s) 903
BcgI CGANNNNNNTGC 2 cut(s) 1000, 1034
BciT130I CCWGG 1 cut(s) 1793
BclI TGATCA 1 cut(s) 1279
BcoDI GTCTC 2 cut(s) 178, 1782
BfaI CTAG 5 cut(s) 449, 581, 1346, 1463, 1782
BfoI RGCGCY 2 cut(s) 460, 1437
BisI GCNGC 3 cut(s) 408, 551, 891
BlsI GCNGC 3 cut(s) 409, 552, 892
BmcAI AGTACT 1 cut(s) 1780
Bme1390I CCNGG 1 cut(s) 1793
Bme18I GGWCC 1 cut(s) 1210
BmeRI GACNNNNNGTC 1 cut(s) 1208
BmgT120I GGNCC 1 cut(s) 1210
BmiI GGNNCC 3 cut(s) 378, 1212, 1435
BmrFI CCNGG 1 cut(s) 1793
BmrI ACTGGG 1 cut(s) 1770
BmsI GCATC 3 cut(s) 73, 325, 1410
BmtI GCTAGC 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 1770
BpiI GAAGAC 1 cut(s) 511
Bpu14I TTCGAA 2 cut(s) 525, 1649
BpuEI CTTGAG 1 cut(s) 1705
BsaAI YACGTR 1 cut(s) 992
BsaBI GATNNNNATC 1 cut(s) 1278
BsaHI GRCGYC 2 cut(s) 754, 1434
BsaI GGTCTC 2 cut(s) 178, 1782
BsaJI CCNNGG 7 cut(s) 538, 596, 703, 1125, 1330, 1437, 1677
BsaWI WCCGGW 1 cut(s) 379
Bse1I ACTGG 6 cut(s) 203, 649, 1263, 1415, 1735, 1776
Bse3DI GCAATG 1 cut(s) 1374
Bse8I GATNNNNATC 1 cut(s) 1278
BseBI CCWGG 1 cut(s) 1793
BseDI CCNNGG 7 cut(s) 538, 596, 703, 1125, 1330, 1437, 1677
BseGI GGATG 3 cut(s) 794, 1196, 1200
BseJI GATNNNNATC 1 cut(s) 1278
BseMI GCAATG 1 cut(s) 1374
BseMII CTCAG 2 cut(s) 638, 646
BseNI ACTGG 6 cut(s) 203, 649, 1263, 1415, 1735, 1776
BsePI GCGCGC 1 cut(s) 1798
BseX3I CGGCCG 1 cut(s) 888
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 3 cut(s) 170, 1554, 1800
Bsh1285I CGRYCG 2 cut(s) 275, 891
BshFI GGCC 3 cut(s) 537, 890, 1676
BshNI GGYRCC 2 cut(s) 376, 1433
BsiEI CGRYCG 2 cut(s) 275, 891
BsiHKAI GWGCWC 1 cut(s) 1459
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 2 cut(s) 1196, 1550
BsmAI GTCTC 2 cut(s) 178, 1782
BsmFI GGGAC 2 cut(s) 1196, 1550
BsmI GAATGC 3 cut(s) 886, 916, 1476
BsnI GGCC 3 cut(s) 537, 890, 1676
Bso31I GGTCTC 2 cut(s) 178, 1782
Bsp119I TTCGAA 2 cut(s) 525, 1649
Bsp1286I GDGCHC 1 cut(s) 1459
Bsp1407I TGTACA 1 cut(s) 1108
Bsp143I GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
Bsp19I CCATGG 2 cut(s) 538, 1125
BspACI CCGC 5 cut(s) 170, 410, 550, 840, 891
BspANI GGCC 3 cut(s) 537, 890, 1676
BspCNI CTCAG 2 cut(s) 637, 645
BspFNI CGCG 3 cut(s) 170, 1554, 1800
BspLI GGNNCC 3 cut(s) 378, 1212, 1435
BspOI GCTAGC 1 cut(s) 452
BspPI GGATC 3 cut(s) 56, 71, 830
BspQI GCTCTTC 1 cut(s) 1630
BspT104I TTCGAA 2 cut(s) 525, 1649
BspT107I GGYRCC 2 cut(s) 376, 1433
BspTNI GGTCTC 2 cut(s) 178, 1782
BsrDI GCAATG 1 cut(s) 1374
BsrGI TGTACA 1 cut(s) 1108
BsrI ACTGG 6 cut(s) 203, 649, 1263, 1415, 1735, 1776
BssECI CCNNGG 7 cut(s) 538, 596, 703, 1125, 1330, 1437, 1677
BssHII GCGCGC 1 cut(s) 1798
BssMI GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
BssNI GRCGYC 2 cut(s) 754, 1434
BssT1I CCWWGG 4 cut(s) 538, 703, 1125, 1677
Bst2UI CCWGG 1 cut(s) 1793
Bst4CI ACNGT 3 cut(s) 781, 1517, 1549
Bst6I CTCTTC 4 cut(s) 870, 1235, 1257, 1630
BstACI GRCGYC 2 cut(s) 754, 1434
BstAUI TGTACA 1 cut(s) 1108
BstBAI YACGTR 1 cut(s) 992
BstBI TTCGAA 2 cut(s) 525, 1649
BstC8I GCNNGC 6 cut(s) 26, 450, 1079, 1365, 1613, 1800
BstDEI CTNAG 4 cut(s) 624, 632, 998, 1319
BstDSI CCRYGG 2 cut(s) 538, 1125
BstF5I GGATG 3 cut(s) 794, 1196, 1200
BstFNI CGCG 3 cut(s) 170, 1554, 1800
BstH2I RGCGCY 2 cut(s) 460, 1437
BstHHI GCGC 7 cut(s) 340, 459, 1436, 1554, 1756, 1800, 1802
BstKTI GATC 7 cut(s) 64, 79, 168, 275, 838, 1282, 1581
BstMAI GTCTC 2 cut(s) 178, 1782
BstMBI GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
BstMCI CGRYCG 2 cut(s) 275, 891
BstMWI GCNNNNNNNGC 6 cut(s) 454, 463, 502, 890, 1420, 1612
BstNI CCWGG 1 cut(s) 1793
BstNSI RCATGY 1 cut(s) 765
BstSCI CCNGG 1 cut(s) 1791
BstSNI TACGTA 1 cut(s) 992
BstUI CGCG 3 cut(s) 170, 1554, 1800
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 511
BstX2I RGATCY 3 cut(s) 61, 76, 835
BstYI RGATCY 3 cut(s) 61, 76, 835
BstZI CGGCCG 1 cut(s) 888
BsuRI GGCC 3 cut(s) 537, 890, 1676
BtgI CCRYGG 2 cut(s) 538, 1125
BtsCI GGATG 3 cut(s) 794, 1196, 1200
BtsIMutI CAGTG 3 cut(s) 279, 1422, 1554
Cac8I GCNNGC 6 cut(s) 26, 450, 1079, 1365, 1613, 1800
CfoI GCGC 7 cut(s) 340, 459, 1436, 1554, 1756, 1800, 1802
Cfr13I GGNCC 1 cut(s) 1210
CseI GACGC 1 cut(s) 743
Csp6I GTAC 5 cut(s) 718, 777, 1109, 1355, 1779
CviQI GTAC 5 cut(s) 718, 777, 1109, 1355, 1779
DdeI CTNAG 4 cut(s) 624, 632, 998, 1319
DinI GGCGCC 1 cut(s) 1435
DpnI GATC 7 cut(s) 63, 78, 167, 274, 837, 1281, 1580
DpnII GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
DrdI GACNNNNNNGTC 2 cut(s) 1120, 1562
DriI GACNNNNNGTC 1 cut(s) 1208
DseDI GACNNNNNNGTC 2 cut(s) 1120, 1562
EaeI YGGCCR 2 cut(s) 888, 1674
EagI CGGCCG 1 cut(s) 888
Eam1104I CTCTTC 4 cut(s) 870, 1235, 1257, 1630
Eam1105I GACNNNNNGTC 1 cut(s) 1208
EarI CTCTTC 4 cut(s) 870, 1235, 1257, 1630
Ecl136II GAGCTC 1 cut(s) 1457
EclXI CGGCCG 1 cut(s) 888
Eco105I TACGTA 1 cut(s) 992
Eco130I CCWWGG 4 cut(s) 538, 703, 1125, 1677
Eco24I GRGCYC 1 cut(s) 1459
Eco31I GGTCTC 2 cut(s) 178, 1782
Eco47I GGWCC 1 cut(s) 1210
Eco52I CGGCCG 1 cut(s) 888
Eco53kI GAGCTC 1 cut(s) 1457
Eco57I CTGAAG 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 1457
EcoO109I RGGNCCY 1 cut(s) 1210
EcoRII CCWGG 1 cut(s) 1791
EcoT14I CCWWGG 4 cut(s) 538, 703, 1125, 1677
EcoT22I ATGCAT 1 cut(s) 1425
EcoT38I GRGCYC 1 cut(s) 1459
EgeI GGCGCC 1 cut(s) 1435
EheI GGCGCC 1 cut(s) 1435
ErhI CCWWGG 4 cut(s) 538, 703, 1125, 1677
FalI AAGNNNNNCTT 4 cut(s) 105, 137, 785, 817
FaqI GGGAC 2 cut(s) 1196, 1550
FauI CCCGC 1 cut(s) 847
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 1 cut(s) 1279
Fnu4HI GCNGC 3 cut(s) 408, 551, 891
FokI GGATG 3 cut(s) 801, 1203, 1207
FriOI GRGCYC 1 cut(s) 1459
Fsp4HI GCNGC 3 cut(s) 408, 551, 891
FspAI RTGCGCAY 1 cut(s) 339
FspBI CTAG 5 cut(s) 449, 581, 1346, 1463, 1782
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 7 cut(s) 339, 458, 1435, 1553, 1755, 1799, 1801
GluI GCNGC 3 cut(s) 408, 551, 891
GsaI CCCAGC 1 cut(s) 444
HaeII RGCGCY 2 cut(s) 460, 1437
HaeIII GGCC 3 cut(s) 537, 890, 1676
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 743
HhaI GCGC 7 cut(s) 340, 459, 1436, 1554, 1756, 1800, 1802
Hin1I GRCGYC 2 cut(s) 754, 1434
Hin6I GCGC 7 cut(s) 338, 457, 1434, 1552, 1754, 1798, 1800
HinP1I GCGC 7 cut(s) 338, 457, 1434, 1552, 1754, 1798, 1800
HindIII AAGCTT 1 cut(s) 1361
HinfI GANTC 5 cut(s) 47, 562, 609, 1288, 1771
HpaII CCGG 1 cut(s) 380
Hpy188I TCNGA 7 cut(s) 367, 567, 627, 635, 956, 1308, 1741
Hpy188III TCNNGA 3 cut(s) 80, 136, 1019
Hpy99I CGWCG 1 cut(s) 759
HpyAV CCTTC 5 cut(s) 779, 1481, 1594, 1639, 1652
HpyCH4III ACNGT 3 cut(s) 781, 1517, 1549
HpyCH4IV ACGT 2 cut(s) 991, 1563
HpyF10VI GCNNNNNNNGC 6 cut(s) 454, 463, 502, 890, 1420, 1612
HpyF3I CTNAG 4 cut(s) 624, 632, 998, 1319
HpySE526I ACGT 2 cut(s) 991, 1563
Hsp92I GRCGYC 2 cut(s) 754, 1434
HspAI GCGC 7 cut(s) 338, 457, 1434, 1552, 1754, 1798, 1800
KasI GGCGCC 1 cut(s) 1433
Ksp22I TGATCA 1 cut(s) 1279
Kzo9I GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
LguI GCTCTTC 1 cut(s) 1630
LmnI GCTCC 5 cut(s) 707, 1454, 1462, 1603, 1795
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 3 cut(s) 73, 325, 1410
MaeI CTAG 5 cut(s) 449, 581, 1346, 1463, 1782
MaeII ACGT 2 cut(s) 991, 1563
MaeIII GTNAC 6 cut(s) 48, 286, 815, 1400, 1511, 1588
MalI GATC 7 cut(s) 63, 78, 167, 274, 837, 1281, 1580
MboI GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
MflI RGATCY 3 cut(s) 61, 76, 835
MhlI GDGCHC 1 cut(s) 1459
MlsI TGGCCA 1 cut(s) 1676
MluNI TGGCCA 1 cut(s) 1676
Mly113I GGCGCC 1 cut(s) 1434
MlyI GAGTC 1 cut(s) 56
Mox20I TGGCCA 1 cut(s) 1676
Mph1103I ATGCAT 1 cut(s) 1425
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 1676
MseI TTAA 6 cut(s) 657, 669, 849, 1236, 1299, 1804
Msp20I TGGCCA 1 cut(s) 1676
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 1793
Mva1269I GAATGC 3 cut(s) 886, 916, 1476
MvaI CCWGG 1 cut(s) 1793
MvnI CGCG 3 cut(s) 170, 1554, 1800
MwoI GCNNNNNNNGC 6 cut(s) 454, 463, 502, 890, 1420, 1612
NarI GGCGCC 1 cut(s) 1434
NcoI CCATGG 2 cut(s) 538, 1125
NdeI CATATG 1 cut(s) 424
NdeII GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
NheI GCTAGC 1 cut(s) 448
NlaIV GGNNCC 3 cut(s) 378, 1212, 1435
NmeAIII GCCGAG 3 cut(s) 621, 1311, 1462
NmuCI GTSAC 4 cut(s) 48, 286, 815, 1400
NsbI TGCGCA 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 1425
NspI RCATGY 1 cut(s) 765
NspV TTCGAA 2 cut(s) 525, 1649
PauI GCGCGC 1 cut(s) 1798
PciSI GCTCTTC 1 cut(s) 1630
PcsI WCGNNNNNNNCGW 1 cut(s) 1434
PctI GAATGC 3 cut(s) 886, 916, 1476
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 4 cut(s) 562, 609, 1288, 1771
PkrI GCNGC 3 cut(s) 409, 552, 892
Ple19I CGATCG 1 cut(s) 275
PleI GAGTC 1 cut(s) 55
PluTI GGCGCC 1 cut(s) 1437
PpsI GAGTC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 992
PpuMI RGGWCCY 1 cut(s) 1210
Psp124BI GAGCTC 1 cut(s) 1459
Psp5II RGGWCCY 1 cut(s) 1210
Psp6I CCWGG 1 cut(s) 1791
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 1791
PspN4I GGNNCC 3 cut(s) 378, 1212, 1435
PspPI GGNCC 1 cut(s) 1210
PspPPI RGGWCCY 1 cut(s) 1210
PsuI RGATCY 3 cut(s) 61, 76, 835
PteI GCGCGC 1 cut(s) 1798
PvuI CGATCG 1 cut(s) 275
RgaI GCGATCGC 1 cut(s) 275
RsaI GTAC 5 cut(s) 719, 778, 1110, 1356, 1780
RsaNI GTAC 5 cut(s) 718, 777, 1109, 1355, 1779
SacI GAGCTC 1 cut(s) 1459
SapI GCTCTTC 1 cut(s) 1630
SaqAI TTAA 6 cut(s) 657, 669, 849, 1236, 1299, 1804
SatI GCNGC 3 cut(s) 408, 551, 891
Sau3AI GATC 7 cut(s) 61, 76, 165, 272, 835, 1279, 1578
Sau96I GGNCC 1 cut(s) 1210
ScaI AGTACT 1 cut(s) 1780
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 1793
SduI GDGCHC 1 cut(s) 1459
SfaAI GCGATCGC 1 cut(s) 275
SfaNI GCATC 3 cut(s) 73, 325, 1410
SfoI GGCGCC 1 cut(s) 1435
SfuI TTCGAA 2 cut(s) 525, 1649
SgfI GCGATCGC 1 cut(s) 275
SinI GGWCC 1 cut(s) 1210
SmlI CTYRAG 1 cut(s) 1684
SmoI CTYRAG 1 cut(s) 1684
SnaBI TACGTA 1 cut(s) 992
SsiI CCGC 5 cut(s) 170, 410, 550, 840, 891
SspDI GGCGCC 1 cut(s) 1433
SspI AATATT 4 cut(s) 513, 823, 909, 1303
SspMI CTAG 5 cut(s) 449, 581, 1346, 1463, 1782
SstI GAGCTC 1 cut(s) 1459
StyD4I CCNGG 1 cut(s) 1791
StyI CCWWGG 4 cut(s) 538, 703, 1125, 1677
TaaI ACNGT 3 cut(s) 781, 1517, 1549
TaiI ACGT 2 cut(s) 994, 1566
TaqI TCGA 6 cut(s) 525, 607, 757, 1020, 1581, 1649
TatI WGTACW 3 cut(s) 776, 1108, 1778
TauI GCSGC 2 cut(s) 553, 893
TfiI GAWTC 4 cut(s) 562, 609, 1288, 1771
Tru1I TTAA 6 cut(s) 657, 669, 849, 1236, 1299, 1804
Tru9I TTAA 6 cut(s) 657, 669, 849, 1236, 1299, 1804
TscAI CASTG 3 cut(s) 286, 1422, 1554
TseFI GTSAC 4 cut(s) 48, 286, 815, 1400
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 4 cut(s) 48, 286, 815, 1400
TspDTI ATGAA 3 cut(s) 120, 147, 384
TspRI CASTG 3 cut(s) 286, 1422, 1554
VpaK11BI GGWCC 1 cut(s) 1210
XapI RAATTY 3 cut(s) 389, 568, 1219
XceI RCATGY 1 cut(s) 765
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 5 cut(s) 449, 581, 1346, 1463, 1782
ZrmI AGTACT 1 cut(s) 1780
Zsp2I ATGCAT 1 cut(s) 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.