Rmu_sc0003801.1_g000004

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003801.1
OG0000119
Physical Location & Seq
Reverse (-)
24562 .. 25240
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003801.1_g000004.1.cds

Sequence Viewer

Length: 555 bp
atgtctaacacgcaggtacccaatgacggccctatgatgagcaacacacggggaagcaagcacaatgccgacaatgttgagtcacaaccgcgagatcccctgtggagagatccagatgcagtttcagtttcaacaaaacaaaaatcgggagaaacacttatttcagattcattctggaataagatgttcgtaattgcatgtgtgatcgcggtcgcattagacccgttgttcttctacattccagtcatcaatgaagaacgaaagtgtcttgcattaaacatagagttgatgattatagctctcactttgcgatcgctcactgatgtcactttcgtagtgagtatcatatatcatgtttgcaaagccatcaacgatgcgcacaaagaacacagacaaaaaaagtctgatgaagtggcaccggattgggaattttcgaaggtatcagcagcggagataattccatttgctaaattagttgctgggaagctagcatggcgctctacgctaaccagtattttagctgtttttcccatgccacaagtaagcagatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

184

Amino Acids

20.56

Weight (kDa)

6.9

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 4
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 415
AccII CGCG 2 cut(s) 91, 209
AciI CCGC 3 cut(s) 89, 209, 449
AclWI GGATC 2 cut(s) 89, 104
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 132
AluBI AGCT 3 cut(s) 299, 487, 521
AluI AGCT 3 cut(s) 299, 487, 521
AlwI GGATC 2 cut(s) 89, 104
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 428
AsiSI GCGATCGC 1 cut(s) 314
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 2 cut(s) 379, 498
AspS9I GGNCC 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 434
AsuNHI GCTAGC 1 cut(s) 487
BaeI ACNNNNGTAYC 1 cut(s) 33
BanI GGYRCC 2 cut(s) 16, 415
BbvI GCAGC 1 cut(s) 458
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 43
BfaI CTAG 1 cut(s) 488
BfoI RGCGCY 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 4
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 18, 417
BmsI GCATC 2 cut(s) 106, 364
BmtI GCTAGC 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 434
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 242, 510
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 242, 510
BseXI GCAGC 1 cut(s) 458
BseYI CCCAGC 1 cut(s) 479
Bsh1236I CGCG 2 cut(s) 91, 209
Bsh1285I CGRYCG 2 cut(s) 213, 314
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 2 cut(s) 16, 415
BsiEI CGRYCG 2 cut(s) 213, 314
BsiSI CCGG 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 30
Bsp119I TTCGAA 1 cut(s) 434
Bsp143I GATC 5 cut(s) 94, 109, 204, 311, 548
BspACI CCGC 3 cut(s) 89, 209, 449
BspANI GGCC 1 cut(s) 30
BspFNI CGCG 2 cut(s) 91, 209
BspLI GGNNCC 2 cut(s) 18, 417
BspMI ACCTGC 1 cut(s) 4
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 89, 104
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 16, 415
BsrI ACTGG 2 cut(s) 242, 510
BssMI GATC 5 cut(s) 94, 109, 204, 311, 548
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 59, 489
BstFNI CGCG 2 cut(s) 91, 209
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 2 cut(s) 379, 498
BstKTI GATC 5 cut(s) 97, 112, 207, 314, 551
BstMBI GATC 5 cut(s) 94, 109, 204, 311, 548
BstMCI CGRYCG 2 cut(s) 213, 314
BstMWI GCNNNNNNNGC 2 cut(s) 493, 502
BstNSI RCATGY 1 cut(s) 201
BstUI CGCG 2 cut(s) 91, 209
BstV1I GCAGC 1 cut(s) 458
BstX2I RGATCY 2 cut(s) 94, 109
BstYI RGATCY 2 cut(s) 94, 109
BsuRI GGCC 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 59, 489
CfoI GCGC 2 cut(s) 379, 498
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 17
CviAII CATG 4 cut(s) 198, 353, 492, 532
CviJI RGCY 5 cut(s) 30, 299, 365, 487, 521
CviKI_1 RGCY 5 cut(s) 30, 299, 365, 487, 521
CviQI GTAC 1 cut(s) 17
DpnI GATC 5 cut(s) 96, 111, 206, 313, 550
DpnII GATC 5 cut(s) 94, 109, 204, 311, 548
FaeI CATG 4 cut(s) 201, 356, 495, 535
FatI CATG 4 cut(s) 197, 352, 491, 531
Fnu4HI GCNGC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 447
FspAI RTGCGCAY 1 cut(s) 378
FspBI CTAG 1 cut(s) 488
FspI TGCGCA 1 cut(s) 378
GlaI GCGC 2 cut(s) 378, 497
GluI GCNGC 1 cut(s) 447
GsaI CCCAGC 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 419
HhaI GCGC 2 cut(s) 379, 498
Hin1II CATG 4 cut(s) 201, 356, 495, 535
Hin6I GCGC 2 cut(s) 377, 496
HinP1I GCGC 2 cut(s) 377, 496
HinfI GANTC 2 cut(s) 80, 167
HpaII CCGG 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 166, 406
Hpy188III TCNNGA 3 cut(s) 113, 147, 175
HpyAV CCTTC 1 cut(s) 430
HpyCH4V TGCA 4 cut(s) 119, 197, 272, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 493, 502
Hsp92II CATG 4 cut(s) 201, 356, 495, 535
HspAI GCGC 2 cut(s) 377, 496
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 5 cut(s) 94, 109, 204, 311, 548
LpnPI CCDG 7 cut(s) 113, 126, 160, 255, 432, 465, 523
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 2 cut(s) 106, 364
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 2 cut(s) 81, 325
MalI GATC 5 cut(s) 96, 111, 206, 313, 550
MboI GATC 5 cut(s) 94, 109, 204, 311, 548
MboII GAAGA 2 cut(s) 223, 266
MflI RGATCY 2 cut(s) 94, 109
MluCI AATT 4 cut(s) 192, 428, 456, 470
MlyI GAGTC 1 cut(s) 89
MseI TTAA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 419
MvnI CGCG 2 cut(s) 91, 209
MwoI GCNNNNNNNGC 2 cut(s) 493, 502
NdeII GATC 5 cut(s) 94, 109, 204, 311, 548
NheI GCTAGC 1 cut(s) 487
NlaIII CATG 4 cut(s) 201, 356, 495, 535
NlaIV GGNNCC 2 cut(s) 18, 417
NmuCI GTSAC 2 cut(s) 81, 325
NsbI TGCGCA 1 cut(s) 378
NspI RCATGY 1 cut(s) 201
NspV TTCGAA 1 cut(s) 434
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 448
Ple19I CGATCG 1 cut(s) 314
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 18, 417
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 2 cut(s) 94, 109
PvuI CGATCG 1 cut(s) 314
RgaI GCGATCGC 1 cut(s) 314
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 5 cut(s) 94, 109, 204, 311, 548
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 89
SetI ASST 5 cut(s) 18, 301, 441, 489, 523
SfaAI GCGATCGC 1 cut(s) 314
SfaNI GCATC 2 cut(s) 106, 364
SfuI TTCGAA 1 cut(s) 434
SgfI GCGATCGC 1 cut(s) 314
Sse9I AATT 4 cut(s) 192, 428, 456, 470
SsiI CCGC 3 cut(s) 89, 209, 449
SspMI CTAG 1 cut(s) 488
TaqI TCGA 1 cut(s) 434
TasI AATT 4 cut(s) 192, 428, 456, 470
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 2 cut(s) 81, 325
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 2 cut(s) 81, 325
TspDTI ATGAA 3 cut(s) 159, 267, 423
TspRI CASTG 1 cut(s) 325
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 201
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.