Rroxscaffold_4G00278810

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000119
Physical Location & Seq
Forward (+)
1772744 .. 1775054
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278810.1

Sequence Viewer

Length: 1401 bp
ATGTGGTATAAGATATTTGTGATTTCATGTCTGATTTCAGTAACCGCAGACCCTTTGTTCTTCTACATCCCCTACATCAACAAAGATAAAAAGTGCATTGATGGGGACAAGAGCGTGAGAACTACAGCTCTAGTCTTCCGATCACTCACCGATATGACTTTCATAATGCATATTATACATGAAATTCGTGTTAGTACCAACACTGTGGTGTCAGAGATATCAAAAGAGGGAAAGCCAGGTTGGCCATGGAAAAAGGCAGAGTTACTTGGGTTTGCCAAGGCAATATCTCAGAAGATGTCCTGGTTGTCTATCTCCATCATAATAGACTTCATAGCCATTCTTCCGATCCCACAAGTACTTGGAGCCTTTTGGTATTTCCTTTCTGTTCAACGAGAGACATCATGCTGGCATGAGGCTTGTGAACAACATCCTGATACCATAAGATGTATATCAACTTACTACTGTGATGACAGACCTACAGATCCACAATATATTAGTAATATCACACTCCTGGATGAAAATTGCCCGGTAAATCCATCAAATGCAACACAATTTAATTTCGGAATCTTCCTTAAGGCCCTTGAGTCCGGTAGCACGCACTCAACAAAGTTTTCCAAGAAGTTCTTTTACTCTTTCTGGTGGGGTCTGCGAAATCTAAGTTCTCTTGGTCAAAATTTGGAAACGAGTACCTATGTGTGGGGAAAACTGCTTCGCAATCGTTATATCTCTAATTGGTTTGCTACTAGTTTTGTATCTTATTGGAAATGTACAGACGTATATACAGTTGGCAACTACGAAATCGGAAGAGATAAGACAGAAGATGAAAATGAAAGAGCTAGAGATACAATGGTATCGATGCTTCGATATATGGATGAAAGTGTGTTAAAACTCATCTGCGACAATCTGAAACCAGTAATCTACACAGAGAACAGTTATGTAATTCGAGCAGGAGAACCACTTGATCTAATGCTCTTCAACGCAGAAGGCATTATATGGACTTACACAACAAGTACTGATGGTTCAATAAAATTGGGTTCCTCAATCACACAGTGTCTTGGTAAAGGTGATTTCTATGGAGAAGAACTTTTGAGTTGGGCTTCCTCATACATGTCCTTCTCCGACCTCCCTATGTCGACCCAAAATGTAAAATGCCATACAAAAGTTGAAGCCTTTTCTCTCATGGCAAAGGACTTGAAGGCTGTGGTCTCCAAATTCTGGTGGCATTTCAGCAAGGCGGTTCCCGATTTGAACAAAAACAATTCTCAGCTGGAGGAATTGGCTCTTTCTTCCCTTAGAGCCCGTCGCCGCAATCGATCAAAGAAGCATTTAAAAGCTCCTCAATTGTCTACTTACTCCCAAGAACTTGGGTACCTGCGGCTGTACCCTGTTAATTGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

466

Amino Acids

53.68

Weight (kDa)

8.42

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1380
Acc65I GGTACC 1 cut(s) 1368
AccB1I GGYRCC 1 cut(s) 1368
AccB7I CCANNNNNTGG 1 cut(s) 1215
AccI GTMKAC 2 cut(s) 1133, 1346
AciI CCGC 4 cut(s) 45, 1235, 1306, 1375
AclWI GGATC 2 cut(s) 340, 476
AcoI YGGCCR 1 cut(s) 242
AcsI RAATTY 3 cut(s) 183, 673, 1211
AdeI CACNNNGTG 1 cut(s) 1050
AfaI GTAC 7 cut(s) 196, 357, 688, 769, 1012, 1370, 1382
AfiI CCNNNNNNNGG 2 cut(s) 696, 1215
AflII CTTAAG 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 1107
AgsI TTSAA 6 cut(s) 389, 976, 1023, 1166, 1195, 1249
AhlI ACTAGT 1 cut(s) 743
AjnI CCWGG 3 cut(s) 235, 299, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 4 cut(s) 128, 836, 1267, 1334
AluI AGCT 4 cut(s) 128, 836, 1267, 1334
Alw26I GTCTC 2 cut(s) 389, 1210
AlwI GGATC 2 cut(s) 340, 476
AoxI GGCC 2 cut(s) 242, 576
ApoI RAATTY 3 cut(s) 183, 673, 1211
Asp718I GGTACC 1 cut(s) 1368
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 139, 1076
BaeI ACNNNNGTAYC 6 cut(s) 834, 834, 867, 867, 1352, 1385
BalI TGGCCA 1 cut(s) 244
BanI GGYRCC 1 cut(s) 1368
BanII GRGCYC 1 cut(s) 1300
BarI GAAGNNNNNNTAC 4 cut(s) 611, 643, 843, 875
BbsI GAAGAC 1 cut(s) 127
BccI CCATC 4 cut(s) 95, 323, 544, 1010
BciT130I CCWGG 3 cut(s) 237, 301, 512
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 2 cut(s) 389, 1210
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 3 cut(s) 131, 744, 837
BfmI CTRYAG 2 cut(s) 123, 477
BfrI CTTAAG 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 1380
BglI GCCNNNNNGGC 1 cut(s) 241
BisI GCNGC 2 cut(s) 1306, 1376
BlsI GCNGC 2 cut(s) 1307, 1377
BmcAI AGTACT 2 cut(s) 357, 1012
Bme1390I CCNGG 4 cut(s) 237, 301, 512, 527
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 4 cut(s) 364, 1036, 1239, 1370
BmrFI CCNGG 4 cut(s) 237, 301, 512, 527
BmsI GCATC 1 cut(s) 846
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 1289
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 527
Bsa29I ATCGAT 2 cut(s) 854, 1312
BsaBI GATNNNNATC 1 cut(s) 448
BsaI GGTCTC 1 cut(s) 1210
BsaJI CCNNGG 2 cut(s) 245, 276
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 2 cut(s) 696, 1215
Bse1I ACTGG 1 cut(s) 911
Bse8I GATNNNNATC 1 cut(s) 448
BseBI CCWGG 3 cut(s) 237, 301, 512
BseCI ATCGAT 2 cut(s) 854, 1312
BseDI CCNNGG 2 cut(s) 245, 276
BseGI GGATG 4 cut(s) 66, 427, 520, 877
BseJI GATNNNNATC 1 cut(s) 448
BseLI CCNNNNNNNGG 2 cut(s) 696, 1215
BseMII CTCAG 2 cut(s) 302, 1277
BseNI ACTGG 1 cut(s) 911
BseRI GAGGAG 1 cut(s) 1326
BshFI GGCC 2 cut(s) 244, 578
BshNI GGYRCC 1 cut(s) 1368
BshVI ATCGAT 2 cut(s) 854, 1312
BsiSI CCGG 2 cut(s) 527, 588
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 696, 1215
BsmAI GTCTC 2 cut(s) 389, 1210
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 2 cut(s) 244, 578
Bso31I GGTCTC 1 cut(s) 1210
Bsp1286I GDGCHC 1 cut(s) 1300
Bsp1407I TGTACA 1 cut(s) 767
Bsp143I GATC 5 cut(s) 140, 345, 481, 961, 1313
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 4 cut(s) 45, 1235, 1306, 1375
BspANI GGCC 2 cut(s) 244, 578
BspCNI CTCAG 2 cut(s) 301, 1276
BspDI ATCGAT 2 cut(s) 854, 1312
BspLI GGNNCC 4 cut(s) 364, 1036, 1239, 1370
BspMI ACCTGC 1 cut(s) 1380
BspPI GGATC 2 cut(s) 340, 476
BspQI GCTCTTC 1 cut(s) 977
BspT107I GGYRCC 1 cut(s) 1368
BspTI CTTAAG 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 1210
BsrGI TGTACA 1 cut(s) 767
BsrI ACTGG 1 cut(s) 911
BssECI CCNNGG 2 cut(s) 245, 276
BssMI GATC 5 cut(s) 140, 345, 481, 961, 1313
BssT1I CCWWGG 2 cut(s) 245, 276
Bst2UI CCWGG 3 cut(s) 237, 301, 512
Bst4CI ACNGT 5 cut(s) 205, 464, 784, 932, 1050
Bst6I CTCTTC 2 cut(s) 799, 977
BstAFI CTTAAG 1 cut(s) 572
BstAUI TGTACA 1 cut(s) 767
BstC8I GCNNGC 2 cut(s) 407, 596
BstDEI CTNAG 4 cut(s) 288, 656, 1263, 1292
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 4 cut(s) 66, 427, 520, 877
BstKTI GATC 5 cut(s) 143, 348, 484, 964, 1316
BstMAI GTCTC 2 cut(s) 389, 1210
BstMBI GATC 5 cut(s) 140, 345, 481, 961, 1313
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 3 cut(s) 237, 301, 512
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 4 cut(s) 235, 299, 510, 525
BstSFI CTRYAG 2 cut(s) 123, 477
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 2 cut(s) 205, 1364
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 2 cut(s) 854, 1312
BsuRI GGCC 2 cut(s) 244, 578
BsuTUI ATCGAT 2 cut(s) 854, 1312
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 4 cut(s) 66, 427, 520, 877
BtsIMutI CAGTG 2 cut(s) 201, 1055
BveI ACCTGC 1 cut(s) 1380
Cac8I GCNNGC 2 cut(s) 407, 596
Cfr13I GGNCC 1 cut(s) 577
ClaI ATCGAT 2 cut(s) 854, 1312
Csp6I GTAC 7 cut(s) 195, 356, 687, 768, 1011, 1369, 1381
CviAII CATG 7 cut(s) 27, 179, 246, 402, 410, 1108, 1180
CviQI GTAC 7 cut(s) 195, 356, 687, 768, 1011, 1369, 1381
DdeI CTNAG 4 cut(s) 288, 656, 1263, 1292
DpnI GATC 5 cut(s) 142, 347, 483, 963, 1315
DpnII GATC 5 cut(s) 140, 345, 481, 961, 1313
DraI TTTAAA 1 cut(s) 1329
DraIII CACNNNGTG 1 cut(s) 1050
EaeI YGGCCR 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 799, 977
EarI CTCTTC 2 cut(s) 799, 977
Eco130I CCWWGG 2 cut(s) 245, 276
Eco24I GRGCYC 1 cut(s) 1300
Eco31I GGTCTC 1 cut(s) 1210
Eco32I GATATC 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 577
EcoRII CCWGG 3 cut(s) 235, 299, 510
EcoRV GATATC 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 245, 276
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 1300
ErhI CCWWGG 2 cut(s) 245, 276
FaeI CATG 7 cut(s) 30, 182, 249, 405, 413, 1111, 1183
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FaqI GGGAC 1 cut(s) 119
FatI CATG 7 cut(s) 26, 178, 245, 401, 409, 1107, 1179
FblI GTMKAC 2 cut(s) 1133, 1346
Fnu4HI GCNGC 2 cut(s) 1306, 1376
FokI GGATG 4 cut(s) 53, 414, 527, 884
FriOI GRGCYC 1 cut(s) 1300
Fsp4HI GCNGC 2 cut(s) 1306, 1376
FspBI CTAG 3 cut(s) 131, 744, 837
GluI GCNGC 2 cut(s) 1306, 1376
GsuI CTGGAG 1 cut(s) 1289
HaeIII GGCC 2 cut(s) 244, 578
HapII CCGG 2 cut(s) 527, 588
Hin1II CATG 7 cut(s) 30, 182, 249, 405, 413, 1111, 1183
HincII GTYRAC 1 cut(s) 1134
HindII GTYRAC 1 cut(s) 1134
HinfI GANTC 2 cut(s) 564, 584
HpaII CCGG 2 cut(s) 527, 588
HphI GGTGA 2 cut(s) 139, 1076
Hpy166II GTNNAC 3 cut(s) 422, 1134, 1347
Hpy188I TCNGA 9 cut(s) 33, 140, 214, 291, 345, 563, 803, 906, 1120
Hpy188III TCNNGA 2 cut(s) 431, 1241
Hpy8I GTNNAC 3 cut(s) 422, 1134, 1347
Hpy99I CGWCG 1 cut(s) 1305
HpyAV CCTTC 3 cut(s) 977, 1123, 1189
HpyCH4III ACNGT 5 cut(s) 205, 464, 784, 932, 1050
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 3 cut(s) 96, 169, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 4 cut(s) 288, 656, 1263, 1292
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 7 cut(s) 30, 182, 249, 405, 413, 1111, 1183
KpnI GGTACC 1 cut(s) 1372
Kzo9I GATC 5 cut(s) 140, 345, 481, 961, 1313
LguI GCTCTTC 1 cut(s) 977
LmnI GCTCC 2 cut(s) 362, 1339
LweI GCATC 1 cut(s) 846
MaeI CTAG 3 cut(s) 131, 744, 837
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 2 cut(s) 40, 261
MalI GATC 5 cut(s) 142, 347, 483, 963, 1315
MboI GATC 5 cut(s) 140, 345, 481, 961, 1313
MfeI CAATTG 1 cut(s) 1340
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 1300
MlsI TGGCCA 1 cut(s) 244
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 1143
MnlI CCTC 7 cut(s) 220, 406, 1048, 1111, 1133, 1264, 1347
Mox20I TGGCCA 1 cut(s) 244
Mph1103I ATGCAT 1 cut(s) 171
MscI TGGCCA 1 cut(s) 244
MseI TTAA 5 cut(s) 555, 573, 884, 1328, 1389
MslI CAYNNNNRTG 2 cut(s) 152, 206
Msp20I TGGCCA 1 cut(s) 244
MspA1I CMGCKG 1 cut(s) 1267
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 2 cut(s) 527, 588
MspR9I CCNGG 4 cut(s) 237, 301, 512, 527
MunI CAATTG 1 cut(s) 1340
MvaI CCWGG 3 cut(s) 237, 301, 512
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 527
NcoI CCATGG 1 cut(s) 245
NdeII GATC 5 cut(s) 140, 345, 481, 961, 1313
NlaIII CATG 7 cut(s) 30, 182, 249, 405, 413, 1111, 1183
NlaIV GGNNCC 4 cut(s) 364, 1036, 1239, 1370
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 1 cut(s) 1111
OliI CACNNNNGTG 1 cut(s) 206
PciI ACATGT 1 cut(s) 1107
PciSI GCTCTTC 1 cut(s) 977
PcsI WCGNNNNNNNCGW 1 cut(s) 1309
PfeI GAWTC 1 cut(s) 564
PflMI CCANNNNNTGG 1 cut(s) 1215
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 2 cut(s) 1307, 1377
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PscI ACATGT 1 cut(s) 1107
Psp6I CCWGG 3 cut(s) 235, 299, 510
PspGI CCWGG 3 cut(s) 235, 299, 510
PspN4I GGNNCC 4 cut(s) 364, 1036, 1239, 1370
PspPI GGNCC 1 cut(s) 577
PsrI GAACNNNNNNTAC 2 cut(s) 1003, 1035
PsuI RGATCY 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 1267
RsaI GTAC 7 cut(s) 196, 357, 688, 769, 1012, 1370, 1382
RsaNI GTAC 7 cut(s) 195, 356, 687, 768, 1011, 1369, 1381
RseI CAYNNNNRTG 2 cut(s) 152, 206
SalI GTCGAC 1 cut(s) 1132
SapI GCTCTTC 1 cut(s) 977
SaqAI TTAA 5 cut(s) 555, 573, 884, 1328, 1389
SatI GCNGC 2 cut(s) 1306, 1376
Sau3AI GATC 5 cut(s) 140, 345, 481, 961, 1313
Sau96I GGNCC 1 cut(s) 577
ScaI AGTACT 2 cut(s) 357, 1012
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 4 cut(s) 237, 301, 512, 527
SduI GDGCHC 1 cut(s) 1300
SfaNI GCATC 1 cut(s) 846
SfcI CTRYAG 2 cut(s) 123, 477
SmiMI CAYNNNNRTG 2 cut(s) 152, 206
SmlI CTYRAG 2 cut(s) 572, 581
SmoI CTYRAG 2 cut(s) 572, 581
SpeI ACTAGT 1 cut(s) 743
SsiI CCGC 4 cut(s) 45, 1235, 1306, 1375
SspMI CTAG 3 cut(s) 131, 744, 837
StyD4I CCNGG 4 cut(s) 235, 299, 510, 525
StyI CCWWGG 2 cut(s) 245, 276
TaaI ACNGT 5 cut(s) 205, 464, 784, 932, 1050
TaiI ACGT 1 cut(s) 777
TaqI TCGA 5 cut(s) 854, 862, 943, 1133, 1312
TatI WGTACW 3 cut(s) 355, 767, 1010
TauI GCSGC 2 cut(s) 1308, 1378
TfiI GAWTC 1 cut(s) 564
Tru1I TTAA 5 cut(s) 555, 573, 884, 1328, 1389
Tru9I TTAA 5 cut(s) 555, 573, 884, 1328, 1389
TscAI CASTG 2 cut(s) 208, 1055
TspDTI ATGAA 8 cut(s) 15, 151, 195, 319, 531, 837, 843, 888
TspRI CASTG 2 cut(s) 208, 1055
Van91I CCANNNNNTGG 1 cut(s) 1215
Vha464I CTTAAG 1 cut(s) 572
XapI RAATTY 3 cut(s) 183, 673, 1211
XceI RCATGY 1 cut(s) 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
XmiI GTMKAC 2 cut(s) 1133, 1346
XspI CTAG 3 cut(s) 131, 744, 837
ZrmI AGTACT 2 cut(s) 357, 1012
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.