RchiOBHm_Chr1g0336181

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000119
Physical Location & Seq
Reverse (-)
27863894 .. 27865001
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56414

Sequence Viewer

Length: 531 bp
ATGAGTACTGTCTACTGTGATGGTCGCAATACTACCGCTAGAAATGTCACTTTTTTCAATCAGTTTTGCCACATCAATGTTGAAGACAATGCTACAGCGCTTTTTTATTTTGGAATATTTCTTAGTTCTCTCAAGAATGGTAACACGGGCTGTATACATTATGCAACAAAGTTGTCCTACTCATTTTGGTGGGGATTGCGGAATCTGAGCAATTTTGGCACAAGTCTCGAAACAAGTACCTATGTGTGGGAAAGTTGCTTTGCAGTATTTATTTGTGTCATTGGCTTGCTACTGTTTCTATATCTGATTGGGAATGTTCAGACCTTTATGTCCATGGAAGCTCAAAGATGGGAGGTTATAAGAAACAAGATGCTTTTGAAAGAGAAAGATATAGAAAGATGGATGGACAGGAATGAACTGCTCGATGATATGAAAAAAGAAATCAAGAAAAACATAACGCAAAAATTTGTAAAGATTCAGATCTGGAGAACCTTTTCAATATTCTTCCCTGGTACACCAAAAAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

176

Amino Acids

20.68

Weight (kDa)

8.98

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AasI GACNNNNNNGTC 1 cut(s) 328
AccI GTMKAC 2 cut(s) 12, 154
AciI CCGC 2 cut(s) 36, 199
AcsI RAATTY 1 cut(s) 464
AfaI GTAC 4 cut(s) 7, 238, 514, 526
AfeI AGCGCT 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 4 cut(s) 58, 83, 379, 498
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 99
ApoI RAATTY 1 cut(s) 464
Asp700I GAANNNNTTC 1 cut(s) 493
AspLEI GCGC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 4 cut(s) 14, 342, 393, 397
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 101
BglII AGATCT 1 cut(s) 480
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 505
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 333, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 333, 508
BseGI GGATG 1 cut(s) 408
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 480
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 2 cut(s) 36, 199
BspCNI CTCAG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 333, 508
BssMI GATC 1 cut(s) 480
BssNAI GTATAC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 333
Bst1107I GTATAC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 3 cut(s) 10, 17, 294
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 122, 206
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 483
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 480
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BstZ17I GTATAC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 100
Csp6I GTAC 4 cut(s) 6, 237, 513, 525
CviAII CATG 1 cut(s) 334
CviJI RGCY 3 cut(s) 150, 285, 341
CviKI_1 RGCY 3 cut(s) 150, 285, 341
CviQI GTAC 4 cut(s) 6, 237, 513, 525
DdeI CTNAG 2 cut(s) 122, 206
DpnI GATC 1 cut(s) 482
DpnII GATC 1 cut(s) 480
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 333
Eco47III AGCGCT 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 337
FatI CATG 1 cut(s) 333
FblI GTMKAC 2 cut(s) 12, 154
FokI GGATG 1 cut(s) 415
FspBI CTAG 1 cut(s) 39
GlaI GCGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 505
HaeII RGCGCY 1 cut(s) 101
HhaI GCGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 2 cut(s) 202, 475
Hpy166II GTNNAC 3 cut(s) 13, 155, 515
Hpy188I TCNGA 4 cut(s) 207, 306, 321, 480
Hpy188III TCNNGA 4 cut(s) 133, 227, 445, 484
Hpy8I GTNNAC 3 cut(s) 13, 155, 515
HpyCH4III ACNGT 3 cut(s) 10, 17, 294
HpyCH4V TGCA 2 cut(s) 164, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 122, 206
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 480
LpnPI CCDG 4 cut(s) 394, 469, 495, 522
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 46, 140
MalI GATC 1 cut(s) 482
MboI GATC 1 cut(s) 480
MboII GAAGA 2 cut(s) 95, 496
MflI RGATCY 1 cut(s) 480
MluCI AATT 2 cut(s) 211, 464
MnlI CCTC 1 cut(s) 346
MroXI GAANNNNTTC 1 cut(s) 493
MslI CAYNNNNRTG 2 cut(s) 75, 187
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 216
NcoI CCATGG 1 cut(s) 333
NdeII GATC 1 cut(s) 480
NlaIII CATG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 202, 475
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 480
RsaI GTAC 4 cut(s) 7, 238, 514, 526
RsaNI GTAC 4 cut(s) 6, 237, 513, 525
RseI CAYNNNNRTG 2 cut(s) 75, 187
Sau3AI GATC 1 cut(s) 480
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 1 cut(s) 510
SetI ASST 6 cut(s) 242, 326, 343, 357, 494, 530
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 75, 187
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 211, 464
SsiI CCGC 2 cut(s) 36, 199
SspI AATATT 2 cut(s) 117, 501
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 3 cut(s) 10, 17, 294
TaqI TCGA 2 cut(s) 228, 423
TasI AATT 2 cut(s) 211, 464
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 2 cut(s) 202, 475
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 429, 446
XapI RAATTY 1 cut(s) 464
XmiI GTMKAC 2 cut(s) 12, 154
XmnI GAANNNNTTC 1 cut(s) 493
XspI CTAG 1 cut(s) 39
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.