RLG00000026246

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000119
Physical Location & Seq
Forward (+)
1597108 .. 1599757
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026246

Sequence Viewer

Length: 1800 bp
ATGAATAACTCGATGGATGAAGCCCCAGAAGTAAGTCTCACAGCTGGTTACACTACTCATTCTGAATACGACCGGAGACCATCAGAACTGAAACAAAACAAAACGAGATTTTGGGTTCGAGGTTCATGGTGGGATTCGATATTTGTAGCCTTGTGTGTTATCGCAGTCTCACTGGATCCACTGTTCTTTTACATTCCTATCATCGATGAGGAAAAAAAGTGCCTTCAAGCAGACACACAATTGAGGACCGTAACTCTCATTTTGCGATCAGTGATGGATATCACTTTTATAGTGCATATTATCTATCGGATTCGTGAAGCTATCATCGCTGCAGCCTCCGATAAGATGGCTAACCAGGAAGAATCGAAGTCTTCCGATTTCTTTAAAGGACCCTCCTTTAAATGTGTTGGTGCAATAGTTGACAATTTGTCATGGCGCTCTCTCATAACTGACATTCTAGCTGTTCTTCCTATCCCACAGGTGCTGCTACTTGTTGTCTTCTTTAAAATGAGAGGCTCTGGATATTTGGACCACAGAAAGATTTTGAATTTCTTTCTTCTCCTTCAATATTTGGCAAGAATTTATCGTATTCACCTGTCTTCCAAAAAACTTACAAATAGTCATGGAATATGGATTAAAGGACTATTCAATTTCTTTCTCTATATCTTTGCAAGTCACGTACTTGGAGCATTTTGGTATTTCTTTTCGATTCAACGAGAGACATCATGTTGGCATCGAAGTTGCGGTCATAACTGTGAAAGTACCTTTTATTGTGATGAGTACAAACATTCAGAAAAGATGGTGACACTTATAACATCTCTGAATGAATCGTGCCCTATAAATACTACTGGACCATTTGATTTTGGAATATTTCTTGATTCTCTGAAGTCCAATAACACGGTATCAACCAACTTTCCACAAAAGTTGTGTTACTCTTTTTGGTGGGTTGAATATCTTACAATATTGTTCCATATTTTTCTTCCATACGTATCAAATATTAATACATATACATTTATGTCTATGGAAACTCAAAAGTCAGAGGAGATAAGAAGGAAGATCAAATCAAAAGAGCAAGATATGAAACTGTGGATGGACAAAAATTGCCTCCCTGCTAAGTTGAGGAAAGAAATCATGGCAAATATAAGAGAAAAATTAGAACAAGACAAGCATGCTGACATGGAGAACATGGAGAATCTGTTCTCCATTCTTCCCTGGTCAACCAAAAAATCTCTAAAGCGTGCTCTCTGCATGAGTACACTGAGAAAAGTACCAAGGCTTGAAGGTATGAATCCAAAAGTTTTGAAAATGATATGTGACTATCTGAAGCCTGTGATATACCCTGAGCATTGCTATGTTGCCAAGGTGGATGACCCTGTTGATCGGATGGTGCTTGTCACTGAAGGAACTATGTGGATCTACTCGATGAATACTAGTACTCCATCCAAGATCCACAGGATTGTTGAGAACGGTGGCATTTATGGAGATGAGCAACTTCTGAGTTGGGCGTCGAAGGACATGCAACACGTCTCGTTTGCAACCCTCCCGATCTCAAAAGAAAATGTGAAATGTCATACAAAAGTGGAAGGGTTTGCTATAACGGCCAAGGACTTGAAAGTAGTCGCCACCAAGTGCAAAATGTATTGGAATTACGATGATCCTCGAGAGAAGGAGAGGGTGGCGAGCTCTACTATAGGAACGTCATTCCGTCGAAACCGCAGTAACCCAAATAGGCCGGCTACCGTAGGAGTAGGTGCGACCTCGCCAAGAACACGAATTGAGTATCTGCAGATGAGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

600

Amino Acids

69.56

Weight (kDa)

9.06

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 42 - 316 1.3e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 812
AciI CCGC 2 cut(s) 744, 1714
AclWI GGATC 5 cut(s) 170, 183, 1421, 1441, 1649
AcoI YGGCCR 1 cut(s) 1599
AcsI RAATTY 2 cut(s) 547, 579
AcuI CTGAAG 3 cut(s) 905, 1343, 1419
AcyI GRCGYC 1 cut(s) 1505
AdeI CACNNNGTG 1 cut(s) 1629
AfaI GTAC 6 cut(s) 681, 763, 782, 1255, 1269, 1435
AflIII ACRYGT 1 cut(s) 1522
AgsI TTSAA 9 cut(s) 227, 547, 566, 649, 713, 950, 1280, 1303, 1612
AhdI GACNNNNNGTC 1 cut(s) 427
AhlI ACTAGT 1 cut(s) 1430
AjiI CACGTC 1 cut(s) 1525
AjnI CCWGG 2 cut(s) 354, 1211
AloI GAACNNNNNNTCC 4 cut(s) 167, 199, 1181, 1213
AluBI AGCT 4 cut(s) 44, 320, 461, 1683
AluI AGCT 4 cut(s) 44, 320, 461, 1683
Alw21I GWGCWC 2 cut(s) 1243, 1685
Alw26I GTCTC 5 cut(s) 41, 70, 172, 713, 1531
AlwI GGATC 5 cut(s) 170, 183, 1421, 1441, 1649
AlwNI CAGNNNCTG 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 1659
AoxI GGCC 2 cut(s) 1599, 1730
ApeKI GCWGC 3 cut(s) 329, 332, 484
ApoI RAATTY 2 cut(s) 547, 579
ArsI GACNNNNNNTTYG 2 cut(s) 730, 762
AseI ATTAAT 1 cut(s) 999
Asp700I GAANNNNTTC 1 cut(s) 1196
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 4 cut(s) 246, 389, 529, 851
AsuHPI GGTGA 2 cut(s) 584, 814
AvaI CYCGRG 1 cut(s) 1659
AvaII GGWCC 4 cut(s) 246, 389, 529, 851
BaeGI GKGCMC 1 cut(s) 836
BamHI GGATCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 1685
BbsI GAAGAC 3 cut(s) 363, 490, 591
Bbv12I GWGCWC 2 cut(s) 1243, 1685
BbvI GCAGC 3 cut(s) 316, 344, 471
BccI CCATC 8 cut(s) 7, 88, 268, 340, 793, 1084, 1378, 1447
BceAI ACGGC 1 cut(s) 1614
BcgI CGANNNNNNTGC 2 cut(s) 1498, 1532
BciT130I CCWGG 2 cut(s) 356, 1213
BcoDI GTCTC 5 cut(s) 41, 70, 172, 713, 1531
BcuI ACTAGT 1 cut(s) 1430
BfaI CTAG 2 cut(s) 458, 1431
BfmI CTRYAG 3 cut(s) 330, 1689, 1784
BfoI RGCGCY 1 cut(s) 439
BisI GCNGC 3 cut(s) 330, 333, 485
BlsI GCNGC 3 cut(s) 331, 334, 486
BmcAI AGTACT 1 cut(s) 1435
Bme1390I CCNGG 2 cut(s) 356, 1213
Bme18I GGWCC 4 cut(s) 246, 389, 529, 851
BmeRI GACNNNNNGTC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 1659
BmgBI CACGTC 1 cut(s) 1525
BmgT120I GGNCC 4 cut(s) 246, 389, 529, 851
BmiI GGNNCC 2 cut(s) 177, 391
BmrFI CCNGG 2 cut(s) 356, 1213
BmsI GCATC 1 cut(s) 742
BpiI GAAGAC 3 cut(s) 363, 490, 591
Bpu10I CCTNAGC 1 cut(s) 1341
Bsa29I ATCGAT 1 cut(s) 204
BsaAI YACGTR 2 cut(s) 679, 988
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 1505
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 4 cut(s) 1211, 1271, 1359, 1602
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 4 cut(s) 1181, 1211, 1420, 1450
Bse118I RCCGGY 1 cut(s) 1732
Bse1I ACTGG 2 cut(s) 177, 853
Bse3DI GCAATG 1 cut(s) 1345
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 2 cut(s) 356, 1213
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 4 cut(s) 1211, 1271, 1359, 1602
BseGI GGATG 5 cut(s) 22, 1095, 1372, 1389, 1439
BseJI GATNNNNATC 1 cut(s) 278
BseMI GCAATG 1 cut(s) 1345
BseMII CTCAG 3 cut(s) 1250, 1332, 1487
BseNI ACTGG 2 cut(s) 177, 853
BseRI GAGGAG 1 cut(s) 1055
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 3 cut(s) 316, 344, 471
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 1601, 1732
BshVI ATCGAT 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 1243, 1685
BsiHKCI CYCGRG 1 cut(s) 1659
BsiSI CCGG 2 cut(s) 73, 1733
BsmAI GTCTC 5 cut(s) 41, 70, 172, 713, 1531
BsmBI CGTCTC 1 cut(s) 1531
BsnI GGCC 2 cut(s) 1601, 1732
Bso31I GGTCTC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 1659
Bsp1286I GDGCHC 3 cut(s) 836, 1243, 1685
Bsp143I GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
BspACI CCGC 2 cut(s) 744, 1714
BspANI GGCC 2 cut(s) 1601, 1732
BspCNI CTCAG 3 cut(s) 1251, 1333, 1488
BspDI ATCGAT 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 177, 391
BspMAI CTGCAG 2 cut(s) 334, 1788
BspPI GGATC 5 cut(s) 170, 183, 1421, 1441, 1649
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 1345
BsrFI RCCGGY 1 cut(s) 1732
BsrI ACTGG 2 cut(s) 177, 853
BssAI RCCGGY 1 cut(s) 1732
BssECI CCNNGG 4 cut(s) 1211, 1271, 1359, 1602
BssMI GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
BssNI GRCGYC 1 cut(s) 1505
BssT1I CCWWGG 3 cut(s) 1271, 1359, 1602
Bst2UI CCWGG 2 cut(s) 356, 1213
Bst4CI ACNGT 7 cut(s) 183, 250, 755, 901, 1086, 1469, 1741
BstACI GRCGYC 1 cut(s) 1505
BstBAI YACGTR 2 cut(s) 679, 988
BstC8I GCNNGC 4 cut(s) 1170, 1239, 1681, 1734
BstDEI CTNAG 4 cut(s) 1113, 1259, 1341, 1496
BstF5I GGATG 5 cut(s) 22, 1095, 1372, 1389, 1439
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 8 cut(s) 178, 269, 1059, 1381, 1416, 1449, 1548, 1657
BstMAI GTCTC 5 cut(s) 41, 70, 172, 713, 1531
BstMBI GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 326, 1598
BstNI CCWGG 2 cut(s) 356, 1213
BstNSI RCATGY 2 cut(s) 1172, 1519
BstSCI CCNGG 2 cut(s) 354, 1211
BstSFI CTRYAG 3 cut(s) 330, 1689, 1784
BstSLI GKGCMC 1 cut(s) 836
BstSNI TACGTA 1 cut(s) 988
BstV1I GCAGC 3 cut(s) 316, 344, 471
BstV2I GAAGAC 3 cut(s) 363, 490, 591
BstX2I RGATCY 3 cut(s) 175, 1413, 1446
BstYI RGATCY 3 cut(s) 175, 1413, 1446
Bsu15I ATCGAT 1 cut(s) 204
BsuRI GGCC 2 cut(s) 1601, 1732
BsuTUI ATCGAT 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 310
BtrI CACGTC 1 cut(s) 1525
BtsCI GGATG 5 cut(s) 22, 1095, 1372, 1389, 1439
BtsIMutI CAGTG 5 cut(s) 170, 179, 276, 1256, 1395
Cac8I GCNNGC 4 cut(s) 1170, 1239, 1681, 1734
CaiI CAGNNNCTG 1 cut(s) 484
CfoI GCGC 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 1732
Cfr13I GGNCC 4 cut(s) 246, 389, 529, 851
ClaI ATCGAT 1 cut(s) 204
CseI GACGC 1 cut(s) 1494
Csp6I GTAC 6 cut(s) 680, 762, 781, 1254, 1268, 1434
CspCI CAANNNNNGTGG 2 cut(s) 906, 941
CviQI GTAC 6 cut(s) 680, 762, 781, 1254, 1268, 1434
DdeI CTNAG 4 cut(s) 1113, 1259, 1341, 1496
DpnI GATC 8 cut(s) 177, 268, 1058, 1380, 1415, 1448, 1547, 1656
DpnII GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
DraI TTTAAA 3 cut(s) 385, 400, 505
DraIII CACNNNGTG 1 cut(s) 1629
DriI GACNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 1599
Eam1105I GACNNNNNGTC 1 cut(s) 427
Ecl136II GAGCTC 1 cut(s) 1683
Eco105I TACGTA 1 cut(s) 988
Eco130I CCWWGG 3 cut(s) 1271, 1359, 1602
Eco24I GRGCYC 1 cut(s) 1685
Eco31I GGTCTC 1 cut(s) 70
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 4 cut(s) 246, 389, 529, 851
Eco53kI GAGCTC 1 cut(s) 1683
Eco57I CTGAAG 3 cut(s) 905, 1343, 1419
Eco88I CYCGRG 1 cut(s) 1659
EcoICRI GAGCTC 1 cut(s) 1683
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 354, 1211
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 3 cut(s) 1271, 1359, 1602
EcoT38I GRGCYC 1 cut(s) 1685
ErhI CCWWGG 3 cut(s) 1271, 1359, 1602
Esp3I CGTCTC 1 cut(s) 1531
Fnu4HI GCNGC 3 cut(s) 330, 333, 485
FokI GGATG 5 cut(s) 29, 1102, 1379, 1396, 1426
FriOI GRGCYC 1 cut(s) 1685
Fsp4HI GCNGC 3 cut(s) 330, 333, 485
FspBI CTAG 2 cut(s) 458, 1431
GlaI GCGC 1 cut(s) 437
GluI GCNGC 3 cut(s) 330, 333, 485
HaeII RGCGCY 1 cut(s) 439
HaeIII GGCC 2 cut(s) 1601, 1732
HapII CCGG 2 cut(s) 73, 1733
HgaI GACGC 1 cut(s) 1494
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 1505
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 2 cut(s) 421, 1218
HindII GTYRAC 2 cut(s) 421, 1218
HinfI GANTC 8 cut(s) 134, 310, 362, 709, 827, 878, 1192, 1288
HpaII CCGG 2 cut(s) 73, 1733
HphI GGTGA 2 cut(s) 584, 814
Hpy166II GTNNAC 3 cut(s) 421, 1218, 1256
Hpy188III TCNNGA 5 cut(s) 314, 519, 875, 1543, 1661
Hpy8I GTNNAC 3 cut(s) 421, 1218, 1256
Hpy99I CGWCG 2 cut(s) 1510, 1710
HpyAV CCTTC 8 cut(s) 233, 572, 1044, 1274, 1394, 1504, 1577, 1660
HpyCH4III ACNGT 7 cut(s) 183, 250, 755, 901, 1086, 1469, 1741
HpyCH4IV ACGT 4 cut(s) 678, 987, 1524, 1697
HpyCH4V TGCA 9 cut(s) 295, 332, 413, 671, 1248, 1519, 1535, 1632, 1786
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 1598
HpyF3I CTNAG 4 cut(s) 1113, 1259, 1341, 1496
HpySE526I ACGT 4 cut(s) 678, 987, 1524, 1697
Hsp92I GRCGYC 1 cut(s) 1505
HspAI GCGC 1 cut(s) 436
KroI GCCGGC 1 cut(s) 1732
KroNI GCCGGC 1 cut(s) 1734
Kzo9I GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
LmnI GCTCC 1 cut(s) 686
Lsp1109I GCAGC 3 cut(s) 316, 344, 471
LweI GCATC 1 cut(s) 742
MaeI CTAG 2 cut(s) 458, 1431
MaeII ACGT 4 cut(s) 678, 987, 1524, 1697
MaeIII GTNAC 8 cut(s) 47, 250, 674, 802, 929, 1313, 1393, 1718
MalI GATC 8 cut(s) 177, 268, 1058, 1380, 1415, 1448, 1547, 1656
MboI GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
MboII GAAGA 9 cut(s) 363, 371, 458, 490, 548, 591, 971, 1066, 1199
MfeI CAATTG 1 cut(s) 239
MflI RGATCY 3 cut(s) 175, 1413, 1446
MhlI GDGCHC 3 cut(s) 836, 1243, 1685
MluCI AATT 9 cut(s) 239, 424, 547, 579, 649, 1099, 1151, 1645, 1773
MroNI GCCGGC 1 cut(s) 1732
MroXI GAANNNNTTC 1 cut(s) 1196
MseI TTAA 5 cut(s) 384, 399, 504, 636, 999
MslI CAYNNNNRTG 2 cut(s) 753, 1350
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 73, 1733
MspR9I CCNGG 2 cut(s) 356, 1213
MunI CAATTG 1 cut(s) 239
MvaI CCWGG 2 cut(s) 356, 1213
MwoI GCNNNNNNNGC 2 cut(s) 326, 1598
NaeI GCCGGC 1 cut(s) 1734
NdeII GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
NgoMIV GCCGGC 1 cut(s) 1732
NlaIV GGNNCC 2 cut(s) 177, 391
NmuCI GTSAC 4 cut(s) 674, 802, 1313, 1393
NspI RCATGY 2 cut(s) 1172, 1519
PaeI GCATGC 1 cut(s) 1172
PaeR7I CTCGAG 1 cut(s) 1659
PdiI GCCGGC 1 cut(s) 1734
PdmI GAANNNNTTC 1 cut(s) 1196
PfeI GAWTC 8 cut(s) 134, 310, 362, 709, 827, 878, 1192, 1288
PkrI GCNGC 3 cut(s) 331, 334, 486
Ppu21I YACGTR 2 cut(s) 679, 988
PpuMI RGGWCCY 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 999
PsiI TTATAA 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 1685
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 354, 1211
PspGI CCWGG 2 cut(s) 354, 1211
PspN4I GGNNCC 2 cut(s) 177, 391
PspPI GGNCC 4 cut(s) 246, 389, 529, 851
PspPPI RGGWCCY 1 cut(s) 389
PstI CTGCAG 2 cut(s) 334, 1788
PstNI CAGNNNCTG 1 cut(s) 484
PsuI RGATCY 3 cut(s) 175, 1413, 1446
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 6 cut(s) 681, 763, 782, 1255, 1269, 1435
RsaNI GTAC 6 cut(s) 680, 762, 781, 1254, 1268, 1434
RseI CAYNNNNRTG 2 cut(s) 753, 1350
SacI GAGCTC 1 cut(s) 1685
SaqAI TTAA 5 cut(s) 384, 399, 504, 636, 999
SatI GCNGC 3 cut(s) 330, 333, 485
Sau3AI GATC 8 cut(s) 175, 266, 1056, 1378, 1413, 1446, 1545, 1654
Sau96I GGNCC 4 cut(s) 246, 389, 529, 851
ScaI AGTACT 1 cut(s) 1435
ScrFI CCNGG 2 cut(s) 356, 1213
SduI GDGCHC 3 cut(s) 836, 1243, 1685
SfaNI GCATC 1 cut(s) 742
SfcI CTRYAG 3 cut(s) 330, 1689, 1784
Sfr274I CTCGAG 1 cut(s) 1659
SinI GGWCC 4 cut(s) 246, 389, 529, 851
SlaI CTCGAG 1 cut(s) 1659
SmiMI CAYNNNNRTG 2 cut(s) 753, 1350
SmlI CTYRAG 1 cut(s) 1659
SmoI CTYRAG 1 cut(s) 1659
SnaBI TACGTA 1 cut(s) 988
SpeI ACTAGT 1 cut(s) 1430
SphI GCATGC 1 cut(s) 1172
Sse9I AATT 9 cut(s) 239, 424, 547, 579, 649, 1099, 1151, 1645, 1773
SsiI CCGC 2 cut(s) 744, 1714
SspI AATATT 4 cut(s) 569, 870, 963, 997
SspMI CTAG 2 cut(s) 458, 1431
SstI GAGCTC 1 cut(s) 1685
StyD4I CCNGG 2 cut(s) 354, 1211
StyI CCWWGG 3 cut(s) 1271, 1359, 1602
TaaI ACNGT 7 cut(s) 183, 250, 755, 901, 1086, 1469, 1741
TaiI ACGT 4 cut(s) 681, 990, 1527, 1700
TasI AATT 9 cut(s) 239, 424, 547, 579, 649, 1099, 1151, 1645, 1773
TatI WGTACW 3 cut(s) 780, 1253, 1433
TfiI GAWTC 8 cut(s) 134, 310, 362, 709, 827, 878, 1192, 1288
Tru1I TTAA 5 cut(s) 384, 399, 504, 636, 999
Tru9I TTAA 5 cut(s) 384, 399, 504, 636, 999
TscAI CASTG 5 cut(s) 177, 186, 276, 1263, 1402
TseFI GTSAC 4 cut(s) 674, 802, 1313, 1393
TseI GCWGC 3 cut(s) 329, 332, 484
Tsp45I GTSAC 4 cut(s) 674, 802, 1313, 1393
TspDTI ATGAA 7 cut(s) 17, 33, 114, 840, 1094, 1301, 1439
TspGWI ACGGA 1 cut(s) 1694
TspRI CASTG 5 cut(s) 177, 186, 276, 1263, 1402
VpaK11BI GGWCC 4 cut(s) 246, 389, 529, 851
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 2 cut(s) 547, 579
XceI RCATGY 2 cut(s) 1172, 1519
XhoI CTCGAG 1 cut(s) 1659
XmnI GAANNNNTTC 1 cut(s) 1196
XspI CTAG 2 cut(s) 458, 1431
ZrmI AGTACT 1 cut(s) 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.