Rh1CG420900

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000119
Physical Location & Seq
Reverse (-)
68036733 .. 68037518
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG420900.1

Sequence Viewer

Length: 693 bp
ATGAAGACAGTGATCATCGAAAACGTAAGACAGAAATTGGAAGAAAACAAAGATGTTCATGTGGAGAATCTACTCTCTATTCTTCCTCGGAAGGACAGAAGGTCCATAAAGCGCCTTCTCTGCATGGACTCACTTAAGAAAGTACCGATGCTTCAACATATGGATGAAAGTGTGTTAAAACTCATCTGCGACAATCTGAAACCAGTAATCTACACAGAGAACAGTTATGTAATTCGAGCAGGAGAACCACTTGATCTAATGCTCTTCAACGCAGAAGGCATTATATGGACTTACACAACAAGTACTGATGGTTCAATAAAATTGGGTTCCTCAGTCACACAGTGTCTTGGTAAAGGTGATTTCTATGGAGAAGAACTTTTGAGTTGGGCTGCCTCATACATGCCCTTCTCCGACCTCCCTATCTCGACCCAAAATGTAAAATGCCATACAAAAGTTGAAGCCTTTTCTCTCATGGCAAAGGACTTGAAGGCTGTGGTCTCCAAATTCTGGTGGCATTTCAGCAAGGCGGTTCCCGATTTGAACAAAAACAATTCTCAGCTGGAGGAATTGGCTCTTTCTTCCATAAAAGCCTGTCGCCGCAATCGATTAAAGAAGCATATAAAAGCTCCTCAATTGTCTACTTACTCCCAAGAACTTGGGTACCTGCGGCTATACCCTGTTAATCATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

230

Amino Acids

26.34

Weight (kDa)

9.03

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 672
Acc65I GGTACC 1 cut(s) 660
AccB1I GGYRCC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 507
AccI GTMKAC 1 cut(s) 638
AciI CCGC 3 cut(s) 527, 598, 667
AcsI RAATTY 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 342
AfaI GTAC 3 cut(s) 144, 304, 662
AfiI CCNNNNNNNGG 1 cut(s) 507
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 6 cut(s) 155, 268, 315, 458, 487, 541
AhdI GACNNNNNGTC 1 cut(s) 100
AluBI AGCT 2 cut(s) 559, 626
AluI AGCT 2 cut(s) 559, 626
Alw26I GTCTC 1 cut(s) 502
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 503
Asp718I GGTACC 1 cut(s) 660
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 102
BaeI ACNNNNGTAYC 2 cut(s) 644, 677
BanI GGYRCC 1 cut(s) 660
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 302
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 502
BfoI RGCGCY 1 cut(s) 115
BfrI CTTAAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 672
BisI GCNGC 3 cut(s) 390, 598, 668
BlsI GCNGC 3 cut(s) 391, 599, 669
BmcAI AGTACT 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 102
BmeRI GACNNNNNGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 3 cut(s) 328, 531, 662
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 581
Bsa29I ATCGAT 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 507
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 685
BseCI ATCGAT 1 cut(s) 604
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 507
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 2 cut(s) 345, 569
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 660
BshVI ATCGAT 1 cut(s) 604
BslI CCNNNNNNNGG 1 cut(s) 507
BsmAI GTCTC 1 cut(s) 502
Bso31I GGTCTC 1 cut(s) 502
Bsp143I GATC 2 cut(s) 12, 253
BspACI CCGC 3 cut(s) 527, 598, 667
BspCNI CTCAG 2 cut(s) 344, 568
BspDI ATCGAT 1 cut(s) 604
BspLI GGNNCC 3 cut(s) 328, 531, 662
BspMI ACCTGC 1 cut(s) 672
BspQI GCTCTTC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 660
BspTI CTTAAG 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 685
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 12, 253
Bst4CI ACNGT 3 cut(s) 10, 224, 342
Bst6I CTCTTC 1 cut(s) 269
BstAFI CTTAAG 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 331, 555
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 15, 256
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 2 cut(s) 12, 253
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 656
Bsu15I ATCGAT 1 cut(s) 604
BsuTUI ATCGAT 1 cut(s) 604
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 15, 347
BveI ACCTGC 1 cut(s) 672
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 102
ClaI ATCGAT 1 cut(s) 604
Csp6I GTAC 3 cut(s) 143, 303, 661
CviAII CATG 4 cut(s) 59, 124, 400, 472
CviJI RGCY 8 cut(s) 389, 461, 491, 559, 572, 590, 626, 670
CviKI_1 RGCY 8 cut(s) 389, 461, 491, 559, 572, 590, 626, 670
CviQI GTAC 3 cut(s) 143, 303, 661
DdeI CTNAG 2 cut(s) 331, 555
DpnI GATC 2 cut(s) 14, 255
DpnII GATC 2 cut(s) 12, 253
DraIII CACNNNGTG 1 cut(s) 342
DriI GACNNNNNGTC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 269
Eam1105I GACNNNNNGTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 102
FaeI CATG 4 cut(s) 62, 127, 403, 475
FatI CATG 4 cut(s) 58, 123, 399, 471
FauNDI CATATG 1 cut(s) 159
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 3 cut(s) 390, 598, 668
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 390, 598, 668
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 390, 598, 668
GsuI CTGGAG 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 115
HhaI GCGC 1 cut(s) 114
Hin1II CATG 4 cut(s) 62, 127, 403, 475
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 2 cut(s) 67, 128
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 639
Hpy188I TCNGA 3 cut(s) 90, 198, 412
Hpy188III TCNNGA 2 cut(s) 424, 533
Hpy8I GTNNAC 1 cut(s) 639
HpyAV CCTTC 6 cut(s) 85, 93, 125, 269, 415, 481
HpyCH4III ACNGT 3 cut(s) 10, 224, 342
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 2 cut(s) 331, 555
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 62, 127, 403, 475
HspAI GCGC 1 cut(s) 112
KpnI GGTACC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 2 cut(s) 12, 253
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 631
LpnPI CCDG 6 cut(s) 216, 225, 493, 545, 604, 677
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 138
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 14, 255
MboI GATC 2 cut(s) 12, 253
MboII GAAGA 6 cut(s) 16, 53, 74, 256, 383, 570
MfeI CAATTG 1 cut(s) 632
MluCI AATT 7 cut(s) 35, 231, 320, 503, 550, 566, 632
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 6 cut(s) 96, 340, 403, 425, 556, 639
MseI TTAA 4 cut(s) 135, 176, 608, 681
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 559
MspCI CTTAAG 1 cut(s) 134
MunI CAATTG 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 159
NdeII GATC 2 cut(s) 12, 253
NlaIII CATG 4 cut(s) 62, 127, 403, 475
NlaIV GGNNCC 3 cut(s) 328, 531, 662
NmuCI GTSAC 1 cut(s) 334
NspI RCATGY 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 601
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 507
PkrI GCNGC 3 cut(s) 391, 599, 669
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 328, 531, 662
PspPI GGNCC 1 cut(s) 102
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PvuII CAGCTG 1 cut(s) 559
RsaI GTAC 3 cut(s) 144, 304, 662
RsaNI GTAC 3 cut(s) 143, 303, 661
RseI CAYNNNNRTG 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 4 cut(s) 135, 176, 608, 681
SatI GCNGC 3 cut(s) 390, 598, 668
Sau3AI GATC 2 cut(s) 12, 253
Sau96I GGNCC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 304
SchI GAGTC 1 cut(s) 122
SetI ASST 7 cut(s) 27, 104, 358, 417, 561, 628, 666
SfaNI GCATC 1 cut(s) 138
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 7 cut(s) 35, 231, 320, 503, 550, 566, 632
SsiI CCGC 3 cut(s) 527, 598, 667
TaaI ACNGT 3 cut(s) 10, 224, 342
TaiI ACGT 1 cut(s) 27
TaqI TCGA 4 cut(s) 18, 235, 425, 604
TasI AATT 7 cut(s) 35, 231, 320, 503, 550, 566, 632
TatI WGTACW 1 cut(s) 302
TauI GCSGC 2 cut(s) 600, 670
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 4 cut(s) 135, 176, 608, 681
Tru9I TTAA 4 cut(s) 135, 176, 608, 681
TscAI CASTG 2 cut(s) 15, 347
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 3 cut(s) 17, 47, 180
TspRI CASTG 2 cut(s) 15, 347
Van91I CCANNNNNTGG 1 cut(s) 507
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 1 cut(s) 503
XceI RCATGY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 638
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.