Rw1G039330

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000119
Physical Location & Seq
Reverse (-)
66874234 .. 66877183
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039330.1

Sequence Viewer

Length: 1941 bp
ATGTCTAAACATCAGGGACCATACGATGAGAGCATCATCGAAATGAGCCTTACACCAGGTATAGGTTATGATTTCAACAGTCCTGAGGCTCTATTGCAACATCCAGTACGGACACCTCAACCTGGAGAACCTCAAGCAAGCAACAGATGGAAGAGGCCAACAGTTGCGGAAATTCTTTCAGTTATGAACCCATGGTGGAATACGATTCTTGTAACTTCATGTGTGATTGCAGTTTTATTTGATCCTTTGTTCTTTTACATTCCATACATCAAAGAGGAAGAAAAGTGCATGGGAATCGATAAACAAGTGCGGACTGCAGCTCTGGTTTTTCGATCAGTCACGGACATCACTTTCCTAGTGCATATCATATACCAACTCCGTGAAGCTATCAAATCTGCAGCCTCAAAGATTCCAAGGGATACCAATTCGGATTGGGAATGGGAATCGGTAACCCGAGTTCAGATGATTCAGTTTGCAAAAGAATTTTCTCGCAAATTGTCATGGCGCTCTTTCCTAACTGACGTTTTTGCTATTTTCCCTATGCCACAACTGCTAATAGTAGGGTTGTTTTTCGAAATGGAAGGCCGTAACTATTTACTGAGAAGAAAGATTCTGAGCGGTTTTCTTCTAGTCCAATATGTGCCAAGAATTTATCGAATTTATCTGTCGTCTACCGTAGTTACACAGTCTGCATTATGGATTAAAGGTGCATTCAATTTTTTCCTCTACGTTCTTGCCAGTCATGTACTGGGAGCCTTTTGGTATTTTTTTTCTATTCAGCGAGAGATATCATGCTGGTATCGAACATGCATTGATACAAAACAAGCAGAATCAGAATGCACTTTTTACTGCCATGACAAGACTGCAATTATTACCAAAGAATTCAATAGAACTCTAGGAGATCTTTGCCTTGTAAAAGTTCCATATAATATGACTGATCCACCATTTGATTTTGGAATATTTTTTGATGCCCTCAAAAATGATATCCAGGGGCCAATAAACTTTCCAACAAAGATTGGTTACTGTTTTTGGTGGGGCTTGCGAAATTTAAGTTCTTTTGGCACAAGTTTGGAAACAAGTACCTATCTGTGGGAAAACAGCTTTGCAATTCTTATTTCTATCATCGGCTTGCTATTATTTCTATATCTCATTGGAAATGTTCAGATATATATGGAGAGGGCAACTACCAGGGTGGAGGAGGTAAGAGAGAAGATTTTGATAAAAAAGAACGATATAGAAAAGTGGATGGAAAAAAATGGTCTCCAAGATGACATGAAGGAAGAGATCATGAAAAACATCAAGCAAAAATTGGAAGAGGACATAAATGCAGATCTGGAGGATCTAGTCTCTATTCTTCCCTGGTATACCAAGAAAGCTCTAAAGCGCGTTCTCTGCATGAGTGCGCTAAGAAAAGTACCAATGCTTAGCCAGATGGATGAAAAAGTTTTGAAAATGATGTGCGACTATCTGAAGCCCGTGAATTACCCAGAGAATACCCTGGTTTTTCAGATGGGAGAACCACTTGATCGAATGGTCTTCATTACAGAAGGGTTTATGTGGACTTACACGACTCCTACTGAGAGTAGTCATTTTGGAAAAGCAGCAGGACTGGCTACTTCTCCATCCATGGACACCAACTTCCTCAAGAAGGGTGATTCTTATGGACACGCTCTTCTGCAGTTTGCATCATCATCTCTTGTGGCACTCCCTACCTCAGCTGCAAATGTCCGGTGTCACACAAAGGTAGAGGCGTTCGTTCTCATGGCCAAGGACTTGAAAAACATAGTAACTAAATGCGAAAATTTTTGGCCTTTCGACTACAATGCTTCTAAAGATGAGGCGGTGAATCAGGTCACACCCCTGGGCCAGTTTCAGCAACAACAAATGCCAAAGAAGCGTGTATCAACATCGATCATCAACCCCACCGGCTATAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

646

Amino Acids

74.53

Weight (kDa)

7.84

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 618
AccI GTMKAC 2 cut(s) 671, 1364
AccII CGCG 1 cut(s) 1386
AciI CCGC 4 cut(s) 167, 310, 618, 1841
AclWI GGATC 3 cut(s) 236, 932, 1347
AcoI YGGCCR 1 cut(s) 1764
AcsI RAATTY 7 cut(s) 171, 482, 648, 657, 881, 1045, 1801
AcuI CTGAAG 1 cut(s) 1490
AfaI GTAC 4 cut(s) 108, 747, 1081, 1416
AfiI CCNNNNNNNGG 4 cut(s) 62, 122, 1089, 1648
AgsI TTSAA 5 cut(s) 76, 715, 886, 1450, 1777
AjnI CCWGG 7 cut(s) 55, 121, 987, 1187, 1358, 1497, 1860
AluBI AGCT 5 cut(s) 320, 386, 1101, 1376, 1718
AluI AGCT 5 cut(s) 320, 386, 1101, 1376, 1718
Alw26I GTCTC 2 cut(s) 1265, 1351
AlwI GGATC 3 cut(s) 236, 932, 1347
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 6 cut(s) 155, 583, 992, 1764, 1808, 1864
ApeKI GCWGC 4 cut(s) 317, 398, 1601, 1718
ApoI RAATTY 7 cut(s) 171, 482, 648, 657, 881, 1045, 1801
AspLEI GCGC 3 cut(s) 507, 1386, 1405
AspS9I GGNCC 3 cut(s) 17, 992, 1864
AsuHPI GGTGA 2 cut(s) 1664, 1855
AsuII TTCGAA 1 cut(s) 573
AvaI CYCGRG 1 cut(s) 453
AvaII GGWCC 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 84
BalI TGGCCA 1 cut(s) 1766
BbsI GAAGAC 1 cut(s) 1528
BbvCI CCTCAGC 1 cut(s) 1714
BbvI GCAGC 4 cut(s) 329, 410, 1613, 1705
BccI CCATC 5 cut(s) 141, 1240, 1426, 1504, 1630
BceAI ACGGC 1 cut(s) 570
BcgI CGANNNNNNTGC 4 cut(s) 277, 311, 1805, 1839
BciT130I CCWGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
BciVI GTATCC 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 1265, 1351
BfaI CTAG 4 cut(s) 356, 629, 896, 1343
BfmI CTRYAG 4 cut(s) 315, 396, 1676, 1930
BfoI RGCGCY 1 cut(s) 508
BfuI GTATCC 1 cut(s) 412
BglII AGATCT 2 cut(s) 901, 1330
BisI GCNGC 4 cut(s) 318, 399, 1602, 1719
BlpI GCTNAGC 1 cut(s) 1424
BlsI GCNGC 4 cut(s) 319, 400, 1603, 1720
Bme1390I CCNGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 3 cut(s) 17, 992, 1864
BmiI GGNNCC 3 cut(s) 18, 754, 993
BmrFI CCNGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 3 cut(s) 42, 958, 1694
BmuI ACTGGG 1 cut(s) 758
BpiI GAAGAC 1 cut(s) 1528
BpmI CTGGAG 2 cut(s) 144, 1355
Bpu10I CCTNAGC 1 cut(s) 1714
Bpu1102I GCTNAGC 1 cut(s) 1424
Bpu14I TTCGAA 1 cut(s) 573
BpuEI CTTGAG 2 cut(s) 117, 1628
Bsa29I ATCGAT 2 cut(s) 297, 1910
BsaI GGTCTC 1 cut(s) 1265
BsaWI WCCGGW 1 cut(s) 1728
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 122, 1089, 1648
Bse118I RCCGGY 1 cut(s) 1925
Bse1I ACTGG 5 cut(s) 104, 738, 753, 1614, 1867
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
BseCI ATCGAT 2 cut(s) 297, 1910
BseGI GGATG 4 cut(s) 100, 1251, 1441, 1622
BseLI CCNNNNNNNGG 4 cut(s) 62, 122, 1089, 1648
BseMII CTCAG 5 cut(s) 75, 590, 605, 1569, 1728
BseNI ACTGG 5 cut(s) 104, 738, 753, 1614, 1867
BseRI GAGGAG 1 cut(s) 1211
BseXI GCAGC 4 cut(s) 329, 410, 1613, 1705
Bsh1236I CGCG 1 cut(s) 1386
BshFI GGCC 6 cut(s) 157, 585, 994, 1766, 1810, 1866
BshVI ATCGAT 2 cut(s) 297, 1910
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 2 cut(s) 1729, 1926
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 62, 122, 1089, 1648
BsmAI GTCTC 2 cut(s) 1265, 1351
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 2 cut(s) 710, 842
BsnI GGCC 6 cut(s) 157, 585, 994, 1766, 1810, 1866
Bso31I GGTCTC 1 cut(s) 1265
BsoBI CYCGRG 1 cut(s) 453
Bsp119I TTCGAA 1 cut(s) 573
Bsp143I GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
Bsp1720I GCTNAGC 1 cut(s) 1424
Bsp19I CCATGG 2 cut(s) 191, 1626
BspACI CCGC 4 cut(s) 167, 310, 618, 1841
BspANI GGCC 6 cut(s) 157, 585, 994, 1766, 1810, 1866
BspCNI CTCAG 5 cut(s) 76, 591, 606, 1570, 1727
BspDI ATCGAT 2 cut(s) 297, 1910
BspFNI CGCG 1 cut(s) 1386
BspHI TCATGA 1 cut(s) 1287
BspLI GGNNCC 3 cut(s) 18, 754, 993
BspMAI CTGCAG 3 cut(s) 319, 400, 1680
BspPI GGATC 3 cut(s) 236, 932, 1347
BspQI GCTCTTC 1 cut(s) 1677
BspT104I TTCGAA 1 cut(s) 573
BspTNI GGTCTC 1 cut(s) 1265
BsrBI CCGCTC 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 1925
BsrI ACTGG 5 cut(s) 104, 738, 753, 1614, 1867
BssAI RCCGGY 1 cut(s) 1925
BssMI GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
BssNAI GTATAC 1 cut(s) 1365
BssT1I CCWWGG 4 cut(s) 191, 413, 1626, 1767
Bst1107I GTATAC 1 cut(s) 1365
Bst2UI CCWGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
Bst4CI ACNGT 5 cut(s) 80, 163, 676, 687, 1025
Bst6I CTCTTC 4 cut(s) 146, 1275, 1308, 1677
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 3 cut(s) 139, 1040, 1130
BstDEI CTNAG 7 cut(s) 84, 599, 614, 1406, 1424, 1578, 1714
BstDSI CCRYGG 2 cut(s) 191, 1626
BstEII GGTNACC 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 1646
BstF5I GGATG 4 cut(s) 100, 1251, 1441, 1622
BstFNI CGCG 1 cut(s) 1386
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 3 cut(s) 507, 1386, 1405
BstKTI GATC 9 cut(s) 244, 335, 904, 940, 1287, 1333, 1342, 1528, 1914
BstMAI GTCTC 2 cut(s) 1265, 1351
BstMBI GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
BstMWI GCNNNNNNNGC 4 cut(s) 550, 1392, 1610, 1894
BstNI CCWGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
BstNSI RCATGY 1 cut(s) 810
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 7 cut(s) 55, 121, 987, 1187, 1358, 1497, 1860
BstSFI CTRYAG 4 cut(s) 315, 396, 1676, 1930
BstUI CGCG 1 cut(s) 1386
BstV1I GCAGC 4 cut(s) 329, 410, 1613, 1705
BstV2I GAAGAC 1 cut(s) 1528
BstX2I RGATCY 3 cut(s) 901, 1330, 1339
BstYI RGATCY 3 cut(s) 901, 1330, 1339
BstZ17I GTATAC 1 cut(s) 1365
Bsu15I ATCGAT 2 cut(s) 297, 1910
Bsu36I CCTNAGG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 6 cut(s) 157, 585, 994, 1766, 1810, 1866
BsuTUI ATCGAT 2 cut(s) 297, 1910
BtgI CCRYGG 2 cut(s) 191, 1626
BtsCI GGATG 4 cut(s) 100, 1251, 1441, 1622
Cac8I GCNNGC 3 cut(s) 139, 1040, 1130
CciI TCATGA 1 cut(s) 1287
CfoI GCGC 3 cut(s) 507, 1386, 1405
Cfr10I RCCGGY 1 cut(s) 1925
Cfr13I GGNCC 3 cut(s) 17, 992, 1864
ClaI ATCGAT 2 cut(s) 297, 1910
CsiI ACCWGGT 1 cut(s) 55
Csp6I GTAC 4 cut(s) 107, 746, 1080, 1415
CviQI GTAC 4 cut(s) 107, 746, 1080, 1415
DdeI CTNAG 7 cut(s) 84, 599, 614, 1406, 1424, 1578, 1714
DpnI GATC 9 cut(s) 243, 334, 903, 939, 1286, 1332, 1341, 1527, 1913
DpnII GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
EaeI YGGCCR 1 cut(s) 1764
Eam1104I CTCTTC 4 cut(s) 146, 1275, 1308, 1677
EarI CTCTTC 4 cut(s) 146, 1275, 1308, 1677
Eco130I CCWWGG 4 cut(s) 191, 413, 1626, 1767
Eco31I GGTCTC 1 cut(s) 1265
Eco32I GATATC 2 cut(s) 789, 985
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 1490
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 453
Eco91I GGTNACC 1 cut(s) 448
EcoNI CCTNNNNNAGG 1 cut(s) 1646
EcoO65I GGTNACC 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 7 cut(s) 55, 121, 987, 1187, 1358, 1497, 1860
EcoRV GATATC 2 cut(s) 789, 985
EcoT14I CCWWGG 4 cut(s) 191, 413, 1626, 1767
EcoT22I ATGCAT 1 cut(s) 812
ErhI CCWWGG 4 cut(s) 191, 413, 1626, 1767
FaqI GGGAC 1 cut(s) 30
FblI GTMKAC 2 cut(s) 671, 1364
Fnu4HI GCNGC 4 cut(s) 318, 399, 1602, 1719
FokI GGATG 4 cut(s) 87, 1258, 1448, 1609
Fsp4HI GCNGC 4 cut(s) 318, 399, 1602, 1719
FspBI CTAG 4 cut(s) 356, 629, 896, 1343
GlaI GCGC 3 cut(s) 506, 1385, 1404
GluI GCNGC 4 cut(s) 318, 399, 1602, 1719
GsuI CTGGAG 2 cut(s) 144, 1355
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 6 cut(s) 157, 585, 994, 1766, 1810, 1866
HapII CCGG 2 cut(s) 1729, 1926
HhaI GCGC 3 cut(s) 507, 1386, 1405
Hin6I GCGC 3 cut(s) 505, 1384, 1403
HinP1I GCGC 3 cut(s) 505, 1384, 1403
HpaII CCGG 2 cut(s) 1729, 1926
HphI GGTGA 2 cut(s) 1664, 1855
Hpy166II GTNNAC 3 cut(s) 672, 1365, 1560
Hpy188I TCNGA 7 cut(s) 430, 462, 615, 835, 1164, 1470, 1509
Hpy188III TCNNGA 4 cut(s) 83, 1288, 1334, 1645
Hpy8I GTNNAC 3 cut(s) 672, 1365, 1560
HpyAV CCTTC 4 cut(s) 575, 1270, 1541, 1642
HpyCH4III ACNGT 5 cut(s) 80, 163, 676, 687, 1025
HpyCH4IV ACGT 2 cut(s) 522, 729
HpyF10VI GCNNNNNNNGC 4 cut(s) 550, 1392, 1610, 1894
HpyF3I CTNAG 7 cut(s) 84, 599, 614, 1406, 1424, 1578, 1714
HpySE526I ACGT 2 cut(s) 522, 729
HspAI GCGC 3 cut(s) 505, 1384, 1403
Kzo9I GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
LguI GCTCTTC 1 cut(s) 1677
LmnI GCTCC 1 cut(s) 752
Lsp1109I GCAGC 4 cut(s) 329, 410, 1613, 1705
LweI GCATC 3 cut(s) 42, 958, 1694
MabI ACCWGGT 1 cut(s) 55
MaeI CTAG 4 cut(s) 356, 629, 896, 1343
MaeII ACGT 2 cut(s) 522, 729
MaeIII GTNAC 9 cut(s) 211, 337, 448, 587, 679, 1019, 1733, 1786, 1852
MalI GATC 9 cut(s) 243, 334, 903, 939, 1286, 1332, 1341, 1527, 1913
MbiI CCGCTC 1 cut(s) 618
MboI GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
MflI RGATCY 3 cut(s) 901, 1330, 1339
MlsI TGGCCA 1 cut(s) 1766
MluNI TGGCCA 1 cut(s) 1766
MlyI GAGTC 1 cut(s) 1564
MmeI TCCRAC 1 cut(s) 1031
Mox20I TGGCCA 1 cut(s) 1766
Mph1103I ATGCAT 1 cut(s) 812
MscI TGGCCA 1 cut(s) 1766
MseI TTAA 2 cut(s) 702, 1049
MslI CAYNNNNRTG 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 1766
MspA1I CMGCKG 1 cut(s) 1718
MspI CCGG 2 cut(s) 1729, 1926
MspR9I CCNGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
Mva1269I GAATGC 2 cut(s) 710, 842
MvaI CCWGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
MvnI CGCG 1 cut(s) 1386
MwoI GCNNNNNNNGC 4 cut(s) 550, 1392, 1610, 1894
NcoI CCATGG 2 cut(s) 191, 1626
NdeII GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
NlaIV GGNNCC 3 cut(s) 18, 754, 993
NmuCI GTSAC 3 cut(s) 337, 1733, 1852
NsiI ATGCAT 1 cut(s) 812
NspI RCATGY 1 cut(s) 810
NspV TTCGAA 1 cut(s) 573
PagI TCATGA 1 cut(s) 1287
PasI CCCWGGG 1 cut(s) 1861
PciSI GCTCTTC 1 cut(s) 1677
PctI GAATGC 2 cut(s) 710, 842
PfeI GAWTC 9 cut(s) 205, 294, 409, 443, 466, 610, 830, 1655, 1846
PkrI GCNGC 4 cut(s) 319, 400, 1603, 1720
PleI GAGTC 1 cut(s) 1564
PpsI GAGTC 1 cut(s) 1564
Psp6I CCWGG 7 cut(s) 55, 121, 987, 1187, 1358, 1497, 1860
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 7 cut(s) 55, 121, 987, 1187, 1358, 1497, 1860
PspN4I GGNNCC 3 cut(s) 18, 754, 993
PspPI GGNCC 3 cut(s) 17, 992, 1864
PsrI GAACNNNNNNTAC 2 cut(s) 441, 473
PstI CTGCAG 3 cut(s) 319, 400, 1680
PsuI RGATCY 3 cut(s) 901, 1330, 1339
PvuII CAGCTG 1 cut(s) 1718
RsaI GTAC 4 cut(s) 108, 747, 1081, 1416
RsaNI GTAC 4 cut(s) 107, 746, 1080, 1415
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 1677
SaqAI TTAA 2 cut(s) 702, 1049
SatI GCNGC 4 cut(s) 318, 399, 1602, 1719
Sau3AI GATC 9 cut(s) 241, 332, 901, 937, 1284, 1330, 1339, 1525, 1911
Sau96I GGNCC 3 cut(s) 17, 992, 1864
SchI GAGTC 1 cut(s) 1564
ScrFI CCNGG 7 cut(s) 57, 123, 989, 1189, 1360, 1499, 1862
SexAI ACCWGGT 1 cut(s) 55
SfaNI GCATC 3 cut(s) 42, 958, 1694
SfcI CTRYAG 4 cut(s) 315, 396, 1676, 1930
SfuI TTCGAA 1 cut(s) 573
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 132, 1643
SmoI CTYRAG 2 cut(s) 132, 1643
SsiI CCGC 4 cut(s) 167, 310, 618, 1841
SspI AATATT 1 cut(s) 960
SspMI CTAG 4 cut(s) 356, 629, 896, 1343
StyD4I CCNGG 7 cut(s) 55, 121, 987, 1187, 1358, 1497, 1860
StyI CCWWGG 4 cut(s) 191, 413, 1626, 1767
TaaI ACNGT 5 cut(s) 80, 163, 676, 687, 1025
TaiI ACGT 2 cut(s) 525, 732
TaqI TCGA 9 cut(s) 39, 297, 331, 573, 655, 802, 1528, 1815, 1910
TatI WGTACW 1 cut(s) 745
TfiI GAWTC 9 cut(s) 205, 294, 409, 443, 466, 610, 830, 1655, 1846
Tru1I TTAA 2 cut(s) 702, 1049
Tru9I TTAA 2 cut(s) 702, 1049
TseFI GTSAC 3 cut(s) 337, 1733, 1852
TseI GCWGC 4 cut(s) 317, 398, 1601, 1718
Tsp45I GTSAC 3 cut(s) 337, 1733, 1852
TspDTI ATGAA 6 cut(s) 200, 207, 1289, 1304, 1452, 1528
TspGWI ACGGA 3 cut(s) 124, 356, 368
VpaK11BI GGWCC 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 1646
XapI RAATTY 7 cut(s) 171, 482, 648, 657, 881, 1045, 1801
XceI RCATGY 1 cut(s) 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmiI GTMKAC 2 cut(s) 671, 1364
XspI CTAG 4 cut(s) 356, 629, 896, 1343
Zsp2I ATGCAT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.