pycom07g26480

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000119
Physical Location & Seq
Reverse (-)
26478707 .. 26479219
513 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26480.1

Sequence Viewer

Length: 381 bp
ATGTGCTTAAAGACGGATGAAAAGGTGTTGACGTTCATATGCTACCATCTAAAGCTAGTGATATACAGTGAGAACAAGTTTGTTTTTCGAATGGAAGATCGACTCGATTGCATGTTTGATAGTCATGGTGGGCAAAGAATCTCATCAATGGCCATCAAACCCCTCGGGAAAGGTCACTTTCATGGGGAAGAACTTCTCGATTGGGCAAACTGTTTCACCGAAGTTCCAGTCTCCAGCAAACATGTCAAAACGGACAAAAGTAGAAGTGGCACTTGCTACCATCCGTCATGTGTATACCAATGCGCGACGGTGTCCGCCCTGTCCCCGGCTAGAATAGCGGATGTCAATGGTGAGAGCTTGCCATTGACAGCTGGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

127

Amino Acids

14.06

Weight (kDa)

6.98

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000119)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g10570 FvH4_4g36390 FvH4_7g31840 FvH4_7g31840 FvH4_7g31850 FvH4_7g31850 FvH4_7g31861 FvH4_7g31861 FvH4_7g31950
malus_domestica MD01G1054600.v1.1 MD01G1221100.v1.1 MD01G1221400.v1.1 MD01G1221600.v1.1 MD01G1221800.v1.1 MD01G1222000.v1.1 MD01G1222100.v1.1 MD07G1140800.v1.1 MD07G1291200.v1.1 MD07G1291400.v1.1 MD07G1291500.v1.1 MD07G1291700.v1.1 MD07G1292500.v1.1 MD07G1292700.v1.1 MD07G1292800.v1.1 MD07G1292900.v1.1 MD08G1241600.v1.1 MD11G1083800.v1.1 MD15G1431600.v1.1
prunus_persica Prupe.1G017800_v2.0.a1 Prupe.1G017800_v2.0.a1 Prupe.1G162800_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312500_v2.0.a1 Prupe.2G312700_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092600_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.4G092800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G142800_v2.0.a1 Prupe.6G143000_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1 Prupe.6G143100_v2.0.a1
pyrus_communis pycom01g23050 pycom01g23070 pycom01g23090 pycom01g23100 pycom01g23110 pycom01g23120 pycom01g23170 pycom07g26410 pycom07g26440 pycom07g26470 pycom07g26480 pycom07g26490 pycom07g26500 pycom07g26510 pycom07g26530 pycom07g26540 pycom07g26570 pycom07g26580 pycom07g26590 pycom08g20940
rosa_chinensis RchiOBHm_Chr1g0324571 RchiOBHm_Chr1g0336181 RchiOBHm_Chr1g0381061 RchiOBHm_Chr1g0381091 RchiOBHm_Chr1g0381121 RchiOBHm_Chr1g0381131 RchiOBHm_Chr1g0381141 RchiOBHm_Chr1g0381161 RchiOBHm_Chr1g0381211 RchiOBHm_Chr2g0110361 RchiOBHm_Chr2g0120231 RchiOBHm_Chr3g0486281 RchiOBHm_Chr3g0486311 RchiOBHm_Chr3g0486401 RchiOBHm_Chr4g0409511 RchiOBHm_Chr4g0409521 RchiOBHm_Chr5g0017271 RchiOBHm_Chr5g0048781 RchiOBHm_Chr5g0048811
rosa_laevigata RLG00000002401 RLG00000008559 RLG00000017798 RLG00000017799 RLG00000023082 RLG00000023088 RLG00000026230 RLG00000026238 RLG00000026240 RLG00000026241 RLG00000026242 RLG00000026243 RLG00000026244 RLG00000026246 RLG00000026247 RLG00000026248 RLG00000029876 RLG00000030189 RLG00000034579
rosa_multiflora Rmu_co8101374.1_g000001 Rmu_co8309149.1_g000001 Rmu_co8450063.1_g000001 Rmu_sc0000441.1_g000094 Rmu_sc0000479.1_g000005 Rmu_sc0000647.1_g000006 Rmu_sc0001393.1_g000031 Rmu_sc0001423.1_g000037 Rmu_sc0001616.1_g000015 Rmu_sc0001857.1_g000011 Rmu_sc0002183.1_g000013 Rmu_sc0002183.1_g000028 Rmu_sc0002183.1_g000030 Rmu_sc0002688.1_g000003 Rmu_sc0002688.1_g000020 Rmu_sc0003801.1_g000003 Rmu_sc0003801.1_g000004 Rmu_sc0004125.1_g000006 Rmu_sc0004494.1_g000005 Rmu_sc0004494.1_g000006 Rmu_sc0004494.1_g000008 Rmu_sc0004494.1_g000009 Rmu_sc0005842.1_g000004 Rmu_sc0006872.1_g000001 Rmu_sc0006872.1_g000005 Rmu_sc0006872.1_g000009 Rmu_sc0006872.1_g000010 Rmu_sc0008053.1_g000026
rosa_roxburghii Rroxscaffold_159G00432960 Rroxscaffold_1G00033060 Rroxscaffold_2G00123150 Rroxscaffold_2G00123170 Rroxscaffold_2G00133500 Rroxscaffold_2G00133550 Rroxscaffold_4G00278650 Rroxscaffold_4G00278750 Rroxscaffold_4G00278790 Rroxscaffold_4G00278800 Rroxscaffold_4G00278810 Rroxscaffold_4G00325390 Rroxscaffold_5G00354010 Rroxscaffold_6G00395890 Rroxscaffold_6G00395900 Rroxscaffold_6G00395920
rosa_rugosa Rorug01G0046900.1 Rorug01G0427000 Rorug01G0427100 Rorug01G0427200 Rorug01G0427300 Rorug01G0427400 Rorug01G0427500 Rorug01G0427500 Rorug01G0427600 Rorug01G0427600 Rorug01G0427700 Rorug01G0427700 Rorug01G0427800 Rorug01G0428700 Rorug02G0166400 Rorug02G0166500 Rorug02G0166500 Rorug02G0166600 Rorug02G0166600 Rorug02G0166700 Rorug02G0167300 Rorug02G0167300 Rorug02G0167300 Rorug03G0224600 Rorug03G0224600 Rorug04G0094400 Rorug05G0241100 Rorug05G0241200
rosa_samantha Rh1BG407700 Rh1BG407900 Rh1BG409000 Rh1CG064700 Rh1CG420900 Rh1CG421000 Rh1CG421200 Rh1CG421300 Rh1CG421800 Rh1CG421900 Rh1CG422000 Rh1CG422200 Rh1CG422300 Rh1CG423600 Rh1DG437600 Rh1DG438900 Rh1DG439000 Rh1DG440300 Rh2AG219100 Rh2CG220700 Rh2DG225300 Rh3AG274400 Rh3AG274600 Rh3CG308900 Rh3DG305800 Rh4AG156400 Rh5AG129000 Rh5AG320900 Rh5CG139600
rosa_wichuraiana Rw1G005300 Rw1G039280 Rw1G039300 Rw1G039310 Rw1G039320 Rw1G039330 Rw1G039340 Rw1G039360 Rw1G039390 Rw2G016910 Rw2G022800 Rw3G024330 Rw3G024340 Rw3G024350 Rw3G024400 Rw4G012810 Rw5G030120 Rw5G030280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 305
AciI CCGC 2 cut(s) 315, 338
AcoI YGGCCR 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 241
AluBI AGCT 3 cut(s) 55, 357, 371
AluI AGCT 3 cut(s) 55, 357, 371
Alw26I GTCTC 1 cut(s) 235
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 208, 362
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 164
BalI TGGCCA 1 cut(s) 152
BccI CCATC 3 cut(s) 54, 161, 288
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 2 cut(s) 56, 330
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 217
Bpu14I TTCGAA 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 163, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 163, 324
BseGI GGATG 3 cut(s) 22, 280, 346
BseLI CCNNNNNNNGG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 88
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 2 cut(s) 315, 338
BspANI GGCC 1 cut(s) 152
BspFNI CGCG 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 163, 324
BssMI GATC 1 cut(s) 97
BssNAI GTATAC 1 cut(s) 295
Bst1107I GTATAC 1 cut(s) 295
Bst4CI ACNGT 3 cut(s) 68, 212, 310
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 359, 373
BstF5I GGATG 3 cut(s) 22, 280, 346
BstFNI CGCG 1 cut(s) 305
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNSI RCATGY 2 cut(s) 115, 245
BstSCI CCNGG 1 cut(s) 324
BstUI CGCG 1 cut(s) 305
BstZ17I GTATAC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 3 cut(s) 22, 280, 346
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 359, 373
CfoI GCGC 1 cut(s) 305
CviAII CATG 5 cut(s) 112, 125, 182, 242, 288
CviJI RGCY 5 cut(s) 55, 152, 329, 357, 371
CviKI_1 RGCY 5 cut(s) 55, 152, 329, 357, 371
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 150
EciI GGCGGA 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 164
FaeI CATG 5 cut(s) 115, 128, 185, 245, 291
FaiI YATR 9 cut(s) 38, 40, 64, 113, 126, 183, 243, 289, 295
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FaqI GGGAC 1 cut(s) 307
FatI CATG 5 cut(s) 111, 124, 181, 241, 287
FauNDI CATATG 1 cut(s) 38
FblI GTMKAC 1 cut(s) 294
FokI GGATG 3 cut(s) 29, 267, 353
FspBI CTAG 2 cut(s) 56, 330
GlaI GCGC 1 cut(s) 304
GsuI CTGGAG 1 cut(s) 217
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 326
HhaI GCGC 1 cut(s) 305
Hin1II CATG 5 cut(s) 115, 128, 185, 245, 291
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 2 cut(s) 102, 138
HpaII CCGG 1 cut(s) 326
HphI GGTGA 2 cut(s) 208, 362
Hpy166II GTNNAC 2 cut(s) 30, 295
Hpy188III TCNNGA 2 cut(s) 166, 197
Hpy8I GTNNAC 2 cut(s) 30, 295
Hpy99I CGWCG 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 68, 212, 310
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 5 cut(s) 115, 128, 185, 245, 291
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 5 cut(s) 240, 247, 332, 339, 357
MaeI CTAG 2 cut(s) 56, 330
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 107, 200
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 1 cut(s) 376
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 38
NdeII GATC 1 cut(s) 97
NlaIII CATG 5 cut(s) 115, 128, 185, 245, 291
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 2 cut(s) 115, 245
NspV TTCGAA 1 cut(s) 88
PciI ACATGT 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 310
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PscI ACATGT 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 326
SetI ASST 6 cut(s) 27, 35, 57, 175, 359, 373
SfuI TTCGAA 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 1 cut(s) 376
SsiI CCGC 2 cut(s) 315, 338
SspMI CTAG 2 cut(s) 56, 330
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 3 cut(s) 68, 212, 310
TaiI ACGT 1 cut(s) 35
TaqI TCGA 4 cut(s) 88, 100, 105, 198
TasI AATT 1 cut(s) 376
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 25, 33, 170
TspGWI ACGGA 3 cut(s) 29, 266, 273
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 310
XceI RCATGY 2 cut(s) 115, 245
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 56, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.